mRNA_P-wetherbeei_contig10155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10155.1.1
Unique NamemRNA_P-wetherbeei_contig10155.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10155.1.1 vs. uniprot
Match: D8LGN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN1_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.130e-32
Identity = 72/171 (42.11%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    1 LWLLVSIAAYAFGVGGFVYCIIRQPRTHSYVQNPDPAAPPNAPPLLVLFSQGSRDQNWYEGAIIAPLYLVMSGALALAARAPTWRRAPFFVRGTAALAAATLFVYAFSLFMELYQLKTKYYRLWGEGESGVMPAFLAEPFSGPVKKSHGGAKRAARLLTLWLNDYTTFASF 513
            LW  VS+  Y  GVGG +YCIIR P+TH Y Q+   A          + S G RDQ WYEG ++A LYL MS A+     A +W+R P  +R  A LA  T+  Y  S++M LY  KT +Y L       ++P  ++E   GP+K+ HG  +R  RL  LWL+DYT F +F
Sbjct:  195 LWFTVSLGCYMTGVGGMIYCIIRNPKTHGYHQDGATA----------MMSAGGRDQFWYEGMVVAVLYLFMSAAILGVYYAASWKRVPSPLRTAAVLACITVLCYVVSVYMALYAKKTPWYNL-----KEMIPPVISEFHKGPLKRKHGLLRRLVRLSYLWLDDYTGFWTF 350          
BLAST of mRNA_P-wetherbeei_contig10155.1.1 vs. uniprot
Match: A0A6H5L4U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.530e-32
Identity = 72/171 (42.11%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    1 LWLLVSIAAYAFGVGGFVYCIIRQPRTHSYVQNPDPAAPPNAPPLLVLFSQGSRDQNWYEGAIIAPLYLVMSGALALAARAPTWRRAPFFVRGTAALAAATLFVYAFSLFMELYQLKTKYYRLWGEGESGVMPAFLAEPFSGPVKKSHGGAKRAARLLTLWLNDYTTFASF 513
            LW  VS+  Y  GVGG +YCIIR P+TH Y Q+   A          + S G RDQ WYEG +++ LYL MS A+     A +W+R P+ +R  A LA  T+  Y  SL+M LY  KT +Y L       ++P  ++E   GP+K+ HG  +R  RL  LWL+DYT F +F
Sbjct:  234 LWFAVSMGCYMTGVGGMIYCIIRNPKTHGYHQDGATA----------MMSPGGRDQFWYEGMVVSVLYLFMSAAILGVYYAASWKRVPYPLRTAAVLACITVLCYVASLYMALYAKKTPWYTL-----KEMIPPVVSEFHKGPLKRKHGLLRRLVRLSYLWLDDYTGFWTF 389          
BLAST of mRNA_P-wetherbeei_contig10155.1.1 vs. uniprot
Match: A0A836CKN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 8.330e-24
Identity = 66/172 (38.37%), Postives = 93/172 (54.07%), Query Frame = 1
Query:    1 LWLLVSIAAYAFGVGGFVYCIIRQPRTHSYVQNPDPAAPPNAPPLLVLFSQGSRDQNWYEGAIIAPLYLVMSGALALAARAPTWRRAPFFVRGTAALAAATLFVYAFSLFMELYQLKTKYYRLWGEGESGVMPAFLAEPFS-GPVKKSHGGAKRAARLLTLWLNDYTTFASF 513
            LWL+VS+A Y  GVGG +YCIIR P+ +       P    +    +VLFS  +RDQ W+EG ++A LYL+M+GA      A  WRRA   +R  A      + V+    F+ LY LK+ +Y    + +  ++PA LA   S G ++KS G   R  RL  +WLN Y    +F
Sbjct:  166 LWLMVSLATYTVGVGGLIYCIIRNPQEYGT----KPTGINSTGHKVVLFSTNARDQWWWEGIVVAFLYLLMAGATWGITSAVQWRRAHPLLRNLAVCCCIAVLVHCIREFLALYILKSPWYNFSSQVQ--MLPAPLAALLSTGTIRKSSGIGFRVVRLSAIWLNQYPGLKAF 331          
BLAST of mRNA_P-wetherbeei_contig10155.1.1 vs. uniprot
Match: A0A7S3YA15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA15_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 5.280e-10
Identity = 62/174 (35.63%), Postives = 78/174 (44.83%), Query Frame = 1
Query:    1 LWLLVSIAAYAFGVGGFVYCIIRQPRTH-SYVQNPDPAAPPNAPPLLVLFSQGSRDQNWYEG------AIIAPLYLVMSGALALAAR--APTWRRAPFFVRGTAALAAATLFVYAFSLFMELYQLKTKYYRLWGEGESGVMPAFLAEPFSGPVKKSHGGAKRAARLLTLWLNDY 495
            LWL VS+A YAFGV G VYC+IR P  + S   N D          L L S G RDQ  YEG      A+ A L L    A+A+  R  A  W       R  AA     + +Y+      LY  KT++Y L        +P  + +     VKK  G AKR  RL   +L +Y
Sbjct:  238 LWLGVSLACYAFGVSGSVYCVIRNPPKYISQGVNFD---------RLELVSGGGRDQYVYEGLLVGAAAVAAGLALAAFAAVAVPPRGGAKRW----LVPRAVAAAVCLAVAIYSAQFLYTLYVKKTRWYSL-----GNTLPEGVKKWLGDSVKKGSGWAKRLLRLSEYFLFEY 393          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGN1_ECTSI1.130e-3242.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4U4_9PHAE1.530e-3242.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKN7_9STRA8.330e-2438.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YA15_HETAK5.280e-1035.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10155contigP-wetherbeei_contig10155:1508..2023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra84566
PFAMsOST3_OST6
Model size516
Max annot lvl4776|Peronosporales
KEGG koko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.3
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000868
EggNOG OGsKOG2603@1|root,KOG2603@2759|Eukaryota,3QCIJ@4776|Peronosporales
Ec32 ortholog descriptionOligosaccharyl transferase complex, subunit OST3/OST6
Ec32 orthologEc-10_002870.1
DescriptionOST3 / OST6 family, transporter family
Cds size516
COG categoryO
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.9515865-CDS-P-wetherbeei_contig10155:1507..20231683185856.9515865-CDS-P-wetherbeei_contig10155:1507..2023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10155 1508..2023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10155.1.1prot_P-wetherbeei_contig10155.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10155 1508..2023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10155.1.1

>prot_P-wetherbeei_contig10155.1.1 ID=prot_P-wetherbeei_contig10155.1.1|Name=mRNA_P-wetherbeei_contig10155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
LWLLVSIAAYAFGVGGFVYCIIRQPRTHSYVQNPDPAAPPNAPPLLVLFS
QGSRDQNWYEGAIIAPLYLVMSGALALAARAPTWRRAPFFVRGTAALAAA
TLFVYAFSLFMELYQLKTKYYRLWGEGESGVMPAFLAEPFSGPVKKSHGG
AKRAARLLTLWLNDYTTFASFR
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mRNA from alignment at P-wetherbeei_contig10155:1508..2023-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10155.1.1 ID=mRNA_P-wetherbeei_contig10155.1.1|Name=mRNA_P-wetherbeei_contig10155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig10155:1508..2023- (Phaeothamnion wetherbeei SAG_119_79)
CTCTGGCTGCTTGTCTCCATCGCTGCCTACGCGTTCGGCGTCGGCGGCTT CGTCTACTGCATCATCCGCCAGCCACGCACGCACAGCTACGTCCAGAACC CGGACCCGGCCGCGCCGCCGAACGCGCCGCCGCTCCTGGTGCTCTTCAGC CAGGGCAGTCGCGACCAAAACTGGTACGAAGGGGCGATTATCGCGCCGCT CTACCTGGTCATGAGCGGCGCTCTGGCGCTGGCGGCACGGGCGCCGACGT GGCGGCGGGCGCCGTTCTTCGTGCGGGGCACGGCCGCACTGGCGGCGGCG ACGCTGTTCGTCTACGCCTTTTCGCTCTTCATGGAGCTCTACCAGCTGAA AACGAAGTACTACCGGCTGTGGGGGGAAGGCGAGTCGGGCGTCATGCCGG CATTCCTGGCGGAGCCGTTCTCGGGGCCGGTGAAGAAGAGCCACGGCGGG GCGAAGCGGGCGGCGCGGCTGCTCACACTGTGGCTCAATGACTACACAAC GTTCGCCTCTTTCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10155:1508..2023-

>mRNA_P-wetherbeei_contig10155.1.1 ID=mRNA_P-wetherbeei_contig10155.1.1|Name=mRNA_P-wetherbeei_contig10155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig10155:1508..2023- (Phaeothamnion wetherbeei SAG_119_79)
CTCTGGCTGCTTGTCTCCATCGCTGCCTACGCGTTCGGCGTCGGCGGCTT
CGTCTACTGCATCATCCGCCAGCCACGCACGCACAGCTACGTCCAGAACC
CGGACCCGGCCGCGCCGCCGAACGCGCCGCCGCTCCTGGTGCTCTTCAGC
CAGGGCAGTCGCGACCAAAACTGGTACGAAGGGGCGATTATCGCGCCGCT
CTACCTGGTCATGAGCGGCGCTCTGGCGCTGGCGGCACGGGCGCCGACGT
GGCGGCGGGCGCCGTTCTTCGTGCGGGGCACGGCCGCACTGGCGGCGGCG
ACGCTGTTCGTCTACGCCTTTTCGCTCTTCATGGAGCTCTACCAGCTGAA
AACGAAGTACTACCGGCTGTGGGGGGAAGGCGAGTCGGGCGTCATGCCGG
CATTCCTGGCGGAGCCGTTCTCGGGGCCGGTGAAGAAGAGCCACGGCGGG
GCGAAGCGGGCGGCGCGGCTGCTCACACTGTGGCTCAATGACTACACAAC
GTTCGCCTCTTTCCGC
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