mRNA_P-wetherbeei_contig11995.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11995.1.1
Unique NamemRNA_P-wetherbeei_contig11995.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11995.1.1 vs. uniprot
Match: A0A836C855_9STRA (C2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C855_9STRA)

HSP 1 Score: 148 bits (374), Expect = 7.360e-43
Identity = 71/145 (48.97%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:   73 KKALEPSFYRKDHFSSPFQPGLDGNIKRQTRLSLRLLEARNLLVSDLVTGTSDPVCFAWVGPKGETADPIDTGGRVQRTAICRGTADPIWDEELVFPLVVDTVDDVMEGQINVVIRDQDDEDGDVHYHELGRVTIPLKAVLLDGK 507
            K+AL+PS++ ++HFSS      D   + QTRL +R+LE   LLV+DL+TGTSDP+C AWV  KG+ A P     R+QRT +C+ T DP+W+ ELVFPL V +V D++ G +++V+ D+D +DG  HY +LG +TIPL+ V+ DG+
Sbjct:    1 KRALKPSYFSRNHFSSRATDD-DDPTRAQTRLVVRILEGNGLLVADLLTGTSDPLCLAWVSSKGDDALPHLADPRLQRTPVCKLTVDPLWNSELVFPLRVTSVRDILAGAVHLVVLDEDTDDGTTHYEDLGALTIPLRDVVADGE 144
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BLAST of mRNA_P-wetherbeei_contig11995.1.1 vs. uniprot
Match: A0A6H5KV23_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV23_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.510e-39
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 1 
Query:   16 PTARTAXXXXXXXXXXWHRKKALEPSFYRKDHFSSPFQPGLDGNIKRQTRLSLRLLEARNLLVSDLVTGTSDPVCFAWVGPKGETADPIDTGGRVQRTAICRGTADPIWDEELVFPLVVDTVDDVMEGQINVVIRDQDDEDGDVHYHELGRVTIPLKAVLLDGKV 510
            PT R               K AL PS++  +HFSSP   G D  + ++TR+++++LE +NLLVSDL+TGTSDPV F WV         +    RVQ T + + T DP+WD E VFPL V +V+DV+ G+IN+++RD DD DGD+HY +LGRV +PL+ VL  G +
Sbjct:   22 PTFRAGGVTSRIDLVRGDHKSALAPSYFSHNHFSSPLA-GTDDPLLKRTRVTVKVLEGKNLLVSDLLTGTSDPVTFLWVSSTESGYVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLDVQSVEDVLSGRINILVRDHDDADGDLHYIDLGRVEVPLETVLTQGNI 185
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BLAST of mRNA_P-wetherbeei_contig11995.1.1 vs. uniprot
Match: D7FNT0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.240e-38
Identity = 74/170 (43.53%), Postives = 105/170 (61.76%), Query Frame = 1 
Query:    1 MESARPTARTAXXXXXXXXXXWHRKKALEPSFYRKDHFSSPFQPGLDGNIKRQTRLSLRLLEARNLLVSDLVTGTSDPVCFAWVGPKGETADPIDTGGRVQRTAICRGTADPIWDEELVFPLVVDTVDDVMEGQINVVIRDQDDEDGDVHYHELGRVTIPLKAVLLDGKV 510
            M    PT R               K AL PS++  +HFSSP   G D  + ++TR+++++LE +NLLVSDL TGTSDP+ F WV         +    RVQ T + + T DP+WD E VFPL V +V+DV+ G+IN+++RD DD +GD+HY +LGRV +PL+ VL +G +
Sbjct:    1 MNQKLPTLRAGGVTSRADLVRGDHKSALAPSYFSHNHFSSPLA-GTDDPLLKRTRVTVKVLEGKNLLVSDLQTGTSDPITFLWVSSTESGYVDLKHDRRVQSTEVRKHTVDPVWDAEFVFPLEVQSVEDVLSGRINILVRDHDDANGDLHYIDLGRVEVPLETVLTEGNI 169
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BLAST of mRNA_P-wetherbeei_contig11995.1.1 vs. uniprot
Match: A0A482SF76_9ARCH (C2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF76_9ARCH)

HSP 1 Score: 102 bits (255), Expect = 2.410e-22
Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:   73 KKALEPSFYRKDHFSSPFQPGLDGNIKRQTRLSLRLLEARNLLVSDLVTGTSDPVCFAWVG-----PKGETADPIDTGGRVQR----TAICRGTADPIWDEELVFPLVVDTVDDVMEGQINVVIRDQD-DEDGDVHYHELGRVTIPLKAVLLDGK 507
            K  L+     KDHFSS    G  GN  + +RL +R++EA+ LL SD+ TG SDPVCF W G     P  E A     GG  Q     T++C  T DP+W+E++VFPL +  V  +   +  + +RD+D D +G++ Y +LG +  P++ +L+ G+
Sbjct:    3 KTGLKVKDVSKDHFSS----GSAGNGPKFSRLVVRIVEAKQLLASDVETGKSDPVCFVWCGYNDEKPNVEQATEHGDGGEQQNRWISTSVCNTTTDPVWNEDIVFPLDISDVMSLSLMRCLIFVRDEDRDSEGNITYDDLGMLEFPMQDLLIAGR 153
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BLAST of mRNA_P-wetherbeei_contig11995.1.1 vs. uniprot
Match: A0A7S3M7F1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7F1_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.050e-19
Identity = 57/153 (37.25%), Postives = 86/153 (56.21%), Query Frame = 1 
Query:   73 KKALEPSFYRKDHFSSPFQPGLDGNIKRQTRLSLRLLEARNLLVSDLVTGTSDPVCFAWVGPKGET-----ADPIDTGGRVQRTAICRGTADPIWDEELVFPLVVDTVDDVMEGQINVVIRDQD---DEDGDVHYHELGRVTIPLKAVLLDGK 507
            K+ L+     KDHFSS    G+  +    +RL +R LE + LL SD+ TG SDPV F W GP  +T     AD  ++G  + RT++C  T +PIW+E+++FPL +  +    E +  + +RD+D    E+G   Y ELG + +P K +   GK
Sbjct:   37 KRGLKIRDVAKDHFSS----GIVQSEPHFSRLVIRFLEGKELLASDIETGKSDPVSFVWCGPINDTPILEEADLPESG--ILRTSVCPTTINPIWNEDVIFPLDITDIKSFTEMKCLIYVRDEDLGAGENGMTTYDELGMLELPFKDIYTKGK 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11995.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836C855_9STRA7.360e-4348.97C2 domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A6H5KV23_9PHAE6.510e-3945.45C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FNT0_ECTSI2.240e-3843.53C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A482SF76_9ARCH2.410e-2238.06C2 domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S3M7F1_9STRA1.050e-1937.25Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11995contigP-wetherbeei_contig11995:754..1785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog90675.XP_010442497.1
PFAMsC2,DUF4782,GRAM
Model size510
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons3
Evalue0.000765
EggNOG OGsKOG1032@1|root,KOG1032@2759|Eukaryota,37HE1@33090|Viridiplantae,3GAHB@35493|Streptophyta,3HR8S@3699|Brassicales
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-12_003510.1
DescriptionC2 and GRAM domain-containing protein
Cds size510
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185934.1638575-CDS-P-wetherbeei_contig11995:753..8661683185934.1638575-CDS-P-wetherbeei_contig11995:753..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11995 754..866 -
1683185934.1750154-CDS-P-wetherbeei_contig11995:1275..15301683185934.1750154-CDS-P-wetherbeei_contig11995:1275..1530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11995 1276..1530 -
1683185934.1830103-CDS-P-wetherbeei_contig11995:1643..17851683185934.1830103-CDS-P-wetherbeei_contig11995:1643..1785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11995 1644..1785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11995.1.1prot_P-wetherbeei_contig11995.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11995 754..1785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11995.1.1

>prot_P-wetherbeei_contig11995.1.1 ID=prot_P-wetherbeei_contig11995.1.1|Name=mRNA_P-wetherbeei_contig11995.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MESARPTARTARTEASHGEHGWHRKKALEPSFYRKDHFSSPFQPGLDGNI
KRQTRLSLRLLEARNLLVSDLVTGTSDPVCFAWVGPKGETADPIDTGGRV
QRTAICRGTADPIWDEELVFPLVVDTVDDVMEGQINVVIRDQDDEDGDVH
YHELGRVTIPLKAVLLDGKV
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mRNA from alignment at P-wetherbeei_contig11995:754..1785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11995.1.1 ID=mRNA_P-wetherbeei_contig11995.1.1|Name=mRNA_P-wetherbeei_contig11995.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig11995:754..1785- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAATCGGCCAGGCCAACGGCGAGAACAGCGCGCACCGAAGCCAGCCA
TGGAGAACATGGCTGGCATCGAAAGAAAGCCCTCGAGCCCTCTTTCTACA
GAAAAGATCATTTTAGCTCCCCCTTCCAGCCAGGCCTTGACGGTAATCTC
AACAACTTAGCCTCTCGACGTTGTGCGGCGATTATTGCGGACAGAGATAT
CAAAACTTGTCGTATTCTGCCTTCTCAATTCTCCTCGTTGTGTCGACCTG
TACAGGAAACATCAAGCGGCAGACCCGTTTGTCGCTGCGGTTACTGGAAG
CACGCAATTTGCTTGTCTCGGACCTCGTGACGGGAACGAGCGATCCTGTT
TGCTTCGCCTGGGTCGGCCCGAAGGGCGAGACCGCCGATCCCATCGACAC
AGGAGGACGCGTGCAGCGCACGGCGATATGCCGCGGCACCGCGGATCCGA
TTTGGGACGAGGAGCTTGTTTTCCCGCTCGTCGTGGATACTGTCGACGAC
GTTATGGAAGGTGTGCAATGGGGGTTAGACTTTAGTTGGGCAGTGGACTT
CTCTGCTCTTTCCTTTTCACATTTTCGTCCAAAGTTCGGAGATTGTTGCT
AGGCGCCACAGCAAGACACACGTACTCTGTCCTGTAGAGGCACCATGGGG
CGGCCTGTTTCCTGTTTGCTTTTTCGGTTTAACGAAGAGCGAGGCGAGAA
ATATCGAAAAGATGTATGCACGGATGCCGGGTTTAAAGAAAGCTCTGGAG
GGATGGAAGAGGAAAGGCAGCCGTCTAAGTGCTGCTGAACAGCTTCATCA
CGAACAGCCCATAATGTGTCCCAGCGCTTTTCCTAATGCGTATGTAACGC
ATCCCCACGCTGCCGCCGCCATCACCCACGTTGCTGCCGCCGTCGCTCCT
CGCGATTGTGCCCCTTCAGGCCAAATCAACGTCGTGATTCGTGACCAAGA
CGACGAAGACGGCGACGTCCACTACCACGAGCTCGGGCGGGTCACGATCC
CACTCAAGGCCGTGCTGCTCGACGGAAAGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11995:754..1785-

>mRNA_P-wetherbeei_contig11995.1.1 ID=mRNA_P-wetherbeei_contig11995.1.1|Name=mRNA_P-wetherbeei_contig11995.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig11995:754..1785- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAATCGGCCAGGCCAACGGCGAGAACAGCGCGCACCGAAGCCAGCCA
TGGAGAACATGGCTGGCATCGAAAGAAAGCCCTCGAGCCCTCTTTCTACA
GAAAAGATCATTTTAGCTCCCCCTTCCAGCCAGGCCTTGACGGAAACATC
AAGCGGCAGACCCGTTTGTCGCTGCGGTTACTGGAAGCACGCAATTTGCT
TGTCTCGGACCTCGTGACGGGAACGAGCGATCCTGTTTGCTTCGCCTGGG
TCGGCCCGAAGGGCGAGACCGCCGATCCCATCGACACAGGAGGACGCGTG
CAGCGCACGGCGATATGCCGCGGCACCGCGGATCCGATTTGGGACGAGGA
GCTTGTTTTCCCGCTCGTCGTGGATACTGTCGACGACGTTATGGAAGGCC
AAATCAACGTCGTGATTCGTGACCAAGACGACGAAGACGGCGACGTCCAC
TACCACGAGCTCGGGCGGGTCACGATCCCACTCAAGGCCGTGCTGCTCGA
CGGAAAGGTC
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