mRNA_P-wetherbeei_contig11990.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11990.1.1
Unique NamemRNA_P-wetherbeei_contig11990.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11990.1.1 vs. uniprot
Match: A0A835ZB96_9STRA (SEC7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB96_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.000e-40
Identity = 91/152 (59.87%), Postives = 104/152 (68.42%), Query Frame = 1 
Query:  142 LWWPLLLGLAERIGDYRLDVRSAAISTLREVLKDYGGA--FSARTHRAILARVLFPPMRHAAGDRTAAARLGSEWPAQGADFPLLMDSWIVTTTPQLFQTVAEVYLKNFRV--AGGALPAVLEFFSWYACQQDVEIMSRLAVQALHQLTEGL 585
            LWWPLL GL+E  GD RLD RSAAISTLR++L+DYG    F      A+   VLF PMRHAAGD T    LGS  P QG DFPL MDSWI TT PQ+FQ+V +VY+KN R       LP +LEF  +YACQ D E+ +RLAVQAL QL EGL
Sbjct:  750 LWWPLLTGLSECQGDSRLDQRSAAISTLRDLLRDYGALPEFDV-AWGAVFRCVLFAPMRHAAGDLTVTPSLGSALPTQGNDFPLHMDSWIATTVPQVFQSVVDVYVKNVRAPPCAACLPDLLEFLGYYACQ-DTEVTARLAVQALRQLVEGL 899
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BLAST of mRNA_P-wetherbeei_contig11990.1.1 vs. uniprot
Match: A0A7S2AIA2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIA2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.390e-9
Identity = 55/166 (33.13%), Postives = 81/166 (48.80%), Query Frame = 1 
Query:  115 NGEHPAVAE------LWWPLLLGLAERIGDYRLDVRSAAISTLREVLKDYGGA-FSARTHRAILARVLFPPMRHAAGDRTAAARLGSEWPAQGADFPLLMDS--WIVTTTPQLFQTVAEVYLKNFRVAGGALPAVLEFFSWYACQQDVEIMSRLAVQALHQLTEGL 585
            NGE+    E      LWWPLLLGLA R+GD  L VRS+A+  L   LK YG   F   T R +   VL P +  A  D T   ++ S  P Q  +      S  +I+TT   ++    ++  +   +A   LP +L   +   CQ ++E ++R+ V AL  L + +
Sbjct:  459 NGENNGKEEGGDCLKLWWPLLLGLAARVGDASLAVRSSALDVLDFTLKRYGILEFGDETWRLVFRGVLLPMLESAWTDDTP--QVYSLEPHQNPEMDASQSSQSFIMTTAASVYTVCIDLLRETPTMAVHLLPELLSMVTDSICQ-EMETLARIGVDALRSLVKSI 621
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BLAST of mRNA_P-wetherbeei_contig11990.1.1 vs. uniprot
Match: A0A6H5KJ76_9PHAE (DUF1981 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ76_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.600e-7
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  139 ELWWPLLLGLAERIGDYRLDVRSAAISTLREVLKDYGGA--FSARTHRAILARVLFPPMR 312
            +LWWPLL GLA   GD RLD R+AA+STL++VLK++G A  FS R    +L R+L P  R
Sbjct:  353 QLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSASEFSLRVWPYLLTRILLPVSR 412
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BLAST of mRNA_P-wetherbeei_contig11990.1.1 vs. uniprot
Match: D8LQI7_ECTSI (BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.930e-7
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:  118 GEHPAVAELWWPLLLGLAERIGDYRLDVRSAAISTLREVLKDYGGAFSARTHRAILARVLFPPMRHAAGDRTAAARLGSEWPAQ 369
            G+     +LWWPLL GL+E IGD R  VRS+A+S L  +L ++G  FSA+T   +   V+ P   +A  + T    L S+WP Q
Sbjct: 1497 GQELVYLQLWWPLLFGLSEAIGDPRPAVRSSALSALSHILTEHGAIFSAQTWGLLFRGVVNPVFENAITEPTQP--LSSDWPGQ 1578
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BLAST of mRNA_P-wetherbeei_contig11990.1.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.960e-7
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  139 ELWWPLLLGLAERIGDYRLDVRSAAISTLREVLKDYGGA--FSARTHRAILARVLFPPMR 312
            +LWWPLL GLA   GD RLD R+AA+STL++VLK++G A  FS R    +L R+L P  R
Sbjct: 1698 QLWWPLLTGLARGAGDPRLDCRAAALSTLQDVLKEFGSAPEFSLRVWPYLLTRILLPVSR 1757
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11990.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZB96_9STRA8.000e-4059.87SEC7 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2AIA2_9STRA6.390e-933.13Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KJ76_9PHAE3.600e-755.00DUF1981 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LQI7_ECTSI3.930e-741.67BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax... [more]
D8LFA1_ECTSI3.960e-755.00BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11990contigP-wetherbeei_contig11990:201..2060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFA1
PFAMsDCB,DUF1981,Sec7,Sec7_N
Model size1396
Max annot lvl2759|Eukaryota
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.36e-10
EggNOG OGsCOG5307@1|root,KOG0929@2759|Eukaryota
Descriptionregulation of ARF protein signal transduction
Cds size1395
COG categoryK
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185934.1256473-CDS-P-wetherbeei_contig11990:200..4311683185934.1256473-CDS-P-wetherbeei_contig11990:200..431Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11990 201..431 +
1683185934.1338289-CDS-P-wetherbeei_contig11990:597..8881683185934.1338289-CDS-P-wetherbeei_contig11990:597..888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11990 598..888 +
1683185934.1411958-CDS-P-wetherbeei_contig11990:1187..20601683185934.1411958-CDS-P-wetherbeei_contig11990:1187..2060Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11990 1188..2060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11990.1.1prot_P-wetherbeei_contig11990.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11990 201..2060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11990.1.1

>prot_P-wetherbeei_contig11990.1.1 ID=prot_P-wetherbeei_contig11990.1.1|Name=mRNA_P-wetherbeei_contig11990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
GGCDDGGDGGLSAPPSPLSPKAAAAAAAAASAGLALTANGEHPAVAELWW
PLLLGLAERIGDYRLDVRSAAISTLREVLKDYGGAFSARTHRAILARVLF
PPMRHAAGDRTAAARLGSEWPAQGADFPLLMDSWIVTTTPQLFQTVAEVY
LKNFRVAGGALPAVLEFFSWYACQQDVEIMSRLAVQALHQLTEGLALLPS
GPPLALGEVLGIATPTPPSPATAAAAVVAATERRRPWLAADAGGNGDGNG
EGDADLVESPGTAAGPQGSALVPPQLWTYLCDHIADMLLGCLVTDFGACG
VVGAGGSTLAGAGFGTNSGGDQTTATDTAAGFSTPEGSDGDAAIRHPSPS
RGAADAADGAAADSDSALAARRTGSAAPTPLDNFGESAAATADAGNGLGG
SGRGSGGGGGDDKNDDANPADGTTPTAPTTPVLVVAAQAGATGGAAAPPP
AAAASAQPPPAGVPA
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mRNA from alignment at P-wetherbeei_contig11990:201..2060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11990.1.1 ID=mRNA_P-wetherbeei_contig11990.1.1|Name=mRNA_P-wetherbeei_contig11990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1860bp|location=Sequence derived from alignment at P-wetherbeei_contig11990:201..2060+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTGCGACGACGGTGGGGACGGCGGGCTGTCAGCGCCGCCGTCGCC
GCTGTCGCCGAAGGCGGCGGCTGCGGCGGCAGCGGCGGCGTCGGCGGGGC
TGGCACTGACGGCGAACGGGGAGCATCCGGCAGTTGCCGAGCTGTGGTGG
CCGCTGCTGCTCGGGTTGGCGGAACGCATCGGCGACTACCGCCTCGACGT
GCGGTCCGCCGCTATCTCCACGCTCCGCGAGGTGCATTTCTCGTCCTTTC
CGGCTATTACCCTTCCATCATGATTGGATTGAGAATGGGACCACAGGAGT
CAGATATCTTTTCATTTGTTTCGGATGGGCTTTGCGATATTTCCCTGTGA
ACATGTTGTCATCGCATTCTGCCATCCTCGTTCCGCCTCGCTCACAGGTG
CTGAAGGACTACGGCGGCGCCTTCAGCGCCCGCACGCATCGCGCCATCCT
CGCCCGTGTACTCTTCCCGCCCATGCGGCACGCCGCCGGCGACCGCACCG
CCGCCGCCCGCCTTGGCTCCGAGTGGCCGGCGCAAGGAGCGGATTTCCCG
CTGCTGATGGACTCGTGGATCGTTACGACGACGCCGCAGCTGTTTCAGAC
AGTAGCGGAGGTGTATCTGAAGAACTTTCGAGTGGCCGGCGGGGCACTGC
CAGCAGTGCTCGAGTTCTTCTCGTGGTATGCCTGCCAGGTGAGCAGATCG
CGGAAGAGAAGGGGAGAAGGGTATGAATGTCCCGTGGGCGCGAACATTGC
CAGATGAGCAGAGGTGAGGTAACCAGGGACTAATTTTCCTCCGCTTTGTG
TTGGCGGCGGCAGTAACATCTCTAGTGAGTGATAGACGGCAGGGTATGGC
GTGCGTGGCGGTATGTGTAGCGAGGCTTGCTGAAACAAAGGAAGTGCCAT
CCCCTTTGGCGCCTTCATTGGTTGCACATTTGACGCTCGCTTTCTTCCCT
TTTCTCTCACCCCATTGCTCTCTTCCAATCGTTGCAGCAAGACGTGGAGA
TCATGTCGCGCCTGGCGGTGCAGGCCCTACACCAGCTGACCGAAGGCCTC
GCGCTGCTGCCGTCAGGTCCGCCACTCGCCCTCGGCGAGGTTCTCGGCAT
CGCCACCCCGACGCCGCCATCCCCGGCGACCGCCGCCGCGGCGGTGGTCG
CAGCGACGGAGCGGCGGCGGCCGTGGCTGGCTGCCGACGCTGGCGGCAAC
GGCGACGGCAATGGGGAGGGCGACGCAGACCTGGTGGAGTCGCCGGGGAC
GGCCGCCGGGCCGCAGGGCAGCGCACTGGTGCCGCCGCAGCTGTGGACGT
ACCTGTGCGACCACATCGCAGACATGCTGCTGGGCTGCCTCGTCACGGAC
TTTGGGGCCTGCGGTGTCGTCGGCGCAGGCGGCAGCACATTGGCAGGCGC
CGGCTTCGGCACTAATAGTGGTGGGGACCAAACCACCGCCACTGACACGG
CAGCGGGATTTTCTACGCCTGAGGGCAGCGACGGCGACGCTGCGATTAGA
CATCCCAGTCCATCGCGAGGTGCTGCTGATGCTGCTGATGGTGCTGCCGC
TGACAGCGACAGCGCACTCGCCGCAAGACGGACGGGGTCGGCGGCACCAA
CGCCCCTCGATAACTTCGGAGAATCGGCGGCGGCGACGGCGGACGCAGGA
AACGGCCTCGGCGGCAGCGGCAGGGGCAGCGGCGGCGGCGGTGGAGACGA
CAAGAACGATGACGCAAATCCTGCCGACGGCACCACGCCCACCGCGCCGA
CAACGCCTGTCCTCGTGGTTGCAGCGCAGGCGGGGGCAACGGGTGGTGCG
GCAGCCCCGCCGCCCGCCGCTGCGGCCTCGGCTCAGCCGCCGCCGGCCGG
AGTGCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11990:201..2060+

>mRNA_P-wetherbeei_contig11990.1.1 ID=mRNA_P-wetherbeei_contig11990.1.1|Name=mRNA_P-wetherbeei_contig11990.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1395bp|location=Sequence derived from alignment at P-wetherbeei_contig11990:201..2060+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTGCGACGACGGTGGGGACGGCGGGCTGTCAGCGCCGCCGTCGCC
GCTGTCGCCGAAGGCGGCGGCTGCGGCGGCAGCGGCGGCGTCGGCGGGGC
TGGCACTGACGGCGAACGGGGAGCATCCGGCAGTTGCCGAGCTGTGGTGG
CCGCTGCTGCTCGGGTTGGCGGAACGCATCGGCGACTACCGCCTCGACGT
GCGGTCCGCCGCTATCTCCACGCTCCGCGAGGTGCTGAAGGACTACGGCG
GCGCCTTCAGCGCCCGCACGCATCGCGCCATCCTCGCCCGTGTACTCTTC
CCGCCCATGCGGCACGCCGCCGGCGACCGCACCGCCGCCGCCCGCCTTGG
CTCCGAGTGGCCGGCGCAAGGAGCGGATTTCCCGCTGCTGATGGACTCGT
GGATCGTTACGACGACGCCGCAGCTGTTTCAGACAGTAGCGGAGGTGTAT
CTGAAGAACTTTCGAGTGGCCGGCGGGGCACTGCCAGCAGTGCTCGAGTT
CTTCTCGTGGTATGCCTGCCAGCAAGACGTGGAGATCATGTCGCGCCTGG
CGGTGCAGGCCCTACACCAGCTGACCGAAGGCCTCGCGCTGCTGCCGTCA
GGTCCGCCACTCGCCCTCGGCGAGGTTCTCGGCATCGCCACCCCGACGCC
GCCATCCCCGGCGACCGCCGCCGCGGCGGTGGTCGCAGCGACGGAGCGGC
GGCGGCCGTGGCTGGCTGCCGACGCTGGCGGCAACGGCGACGGCAATGGG
GAGGGCGACGCAGACCTGGTGGAGTCGCCGGGGACGGCCGCCGGGCCGCA
GGGCAGCGCACTGGTGCCGCCGCAGCTGTGGACGTACCTGTGCGACCACA
TCGCAGACATGCTGCTGGGCTGCCTCGTCACGGACTTTGGGGCCTGCGGT
GTCGTCGGCGCAGGCGGCAGCACATTGGCAGGCGCCGGCTTCGGCACTAA
TAGTGGTGGGGACCAAACCACCGCCACTGACACGGCAGCGGGATTTTCTA
CGCCTGAGGGCAGCGACGGCGACGCTGCGATTAGACATCCCAGTCCATCG
CGAGGTGCTGCTGATGCTGCTGATGGTGCTGCCGCTGACAGCGACAGCGC
ACTCGCCGCAAGACGGACGGGGTCGGCGGCACCAACGCCCCTCGATAACT
TCGGAGAATCGGCGGCGGCGACGGCGGACGCAGGAAACGGCCTCGGCGGC
AGCGGCAGGGGCAGCGGCGGCGGCGGTGGAGACGACAAGAACGATGACGC
AAATCCTGCCGACGGCACCACGCCCACCGCGCCGACAACGCCTGTCCTCG
TGGTTGCAGCGCAGGCGGGGGCAACGGGTGGTGCGGCAGCCCCGCCGCCC
GCCGCTGCGGCCTCGGCTCAGCCGCCGCCGGCCGGAGTGCCGGCG
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