mRNA_P-wetherbeei_contig11982.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A836CKS6_9STRA (RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS6_9STRA) HSP 1 Score: 265 bits (678), Expect = 1.180e-82 Identity = 142/196 (72.45%), Postives = 163/196 (83.16%), Query Frame = 1 Query: 1 GSRAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRC-RGSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAA----ADTELLLAKCLAAISRKSE 573 GSRAIVF QTK+ECDELAAGNAFKTLSSQVLHGDIGQ QR+VTI QFRKGQF VLVATDVAARGIDI+++DLVVQYRPP DPDTYVHRSGRTGRAGR GT VTLF+ +E+RD+ +IE+AIGKGF+ R +VPSA VM + VALKA+D V VVP+F +AR+LLA A DTE LLA+CLAAI+RK+E Sbjct: 304 GSRAIVFTQTKRECDELAAGNAFKTLSSQVLHGDIGQNQREVTIGQFRKGQFQVLVATDVAARGIDISEIDLVVQYRPPTDPDTYVHRSGRTGRAGRLGTCVTLFADNERRDVQKIEKAIGKGFKFERAAVPSATQVMEVAGKVALKALDTVSADVVPFFTPAARELLAESQADGAELDTEQLLARCLAAIARKTE 499
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI) HSP 1 Score: 237 bits (605), Expect = 7.720e-70 Identity = 126/191 (65.97%), Postives = 151/191 (79.06%), Query Frame = 1 Query: 1 GSRAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRC-RGSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 GS AIVF +K ECDELA G FKTL+SQVLHGDI Q QRD TI FR F VLVATDVAARGID++D+DLVVQYRPP DPD+YVHRSGRTGRAGR G AVTL++ +E RDI +IE+ +G+GFR RG+VPSAE VM+ + TVA + I V D +V +F +SA++LLA E + D ELLLAKCLAAI+RK+ Sbjct: 509 GSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKT 699
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A835ZP19_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP19_9STRA) HSP 1 Score: 212 bits (539), Expect = 3.310e-61 Identity = 112/172 (65.12%), Postives = 137/172 (79.65%), Query Frame = 1 Query: 73 TLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRC-RGSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLA----SEAAADTELLLAKCLAAISRKSE 573 T + QVLHGDIGQ QR+VTI QFRK QF VLVATDVAARGIDI+++DLVVQYRPP DPDTYVHRSGRTGRAGR G VTL++ +E+RD+ +IERA+GKGF+ R VPS VM + TVALK++ AV + VVP+F +A++L+A SE DTE LLA+CLAAI+RK+E Sbjct: 373 TYAVQVLHGDIGQNQREVTIGQFRKSQFQVLVATDVAARGIDISEIDLVVQYRPPTDPDTYVHRSGRTGRAGRSGVCVTLYADNERRDMQKIERAVGKGFKFERAPVPSPAQVMEVAGTVALKSLTAVSEEVVPFFSSAAKELIAESTASEGGLDTEKLLARCLAAIARKTE 544
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A7S2KUG8_9STRA (RNA helicase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUG8_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.420e-59 Identity = 107/189 (56.61%), Postives = 137/189 (72.49%), Query Frame = 1 Query: 7 RAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCRG-SVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 + IVF +TK ECDEL +G+ FKTL++Q +HGDIGQKQR+ T+ FR G F+VLVATDVAARGIDI DVDLV+Q+ PP D DTYVHRSGRTGRAG +G +V LF ++ RDIVRIER++G GF+ PS EA + +A + A V D +F ++AR LLA+ A DT +A+CLAAISR++ Sbjct: 13 KTIVFTETKAECDELVSGSVFKTLTAQAIHGDIGQKQREATLAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFHPPRDDDTYVHRSGRTGRAGAKGISVLLFQQNQARDIVRIERSLGHGFKFELLGPPSIEAALNAAAKTSAIACKTVADETAEHFKEAARALLANGDAEDT---VARCLAAISRRT 198
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A7S1B3X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3X5_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.240e-57 Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = 1 Query: 7 RAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCR--GSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 + IVF QTK++ DEL +G FK+L++Q LHGD+GQKQRD T+N FR G F+VLVATDVAARGIDI DVDLV+QY PP D DTYVHRSGRTGRAGR+GT+V LF + RDIVRIE+++G GF+ G SA + A + T AL A V + YF +SA LL +E+ D ++A+CLAAISR+S Sbjct: 408 KTIVFTQTKRDADELVSGGVFKSLTAQALHGDVGQKQRDATLNAFRAGSFNVLVATDVAARGIDIQDVDLVIQYEPPRDTDTYVHRSGRTGRAGRKGTSVLLFEPKQGRDIVRIEKSLGHGFQFELVGPPTSAATLRAAAKTSAL-ACSGVNEETAEYFRESASNLL-NESGMDAVDIVARCLAAISRRS 595
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: B8BZG6_THAPS (RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZG6_THAPS) HSP 1 Score: 196 bits (499), Expect = 1.460e-57 Identity = 106/189 (56.08%), Postives = 135/189 (71.43%), Query Frame = 1 Query: 7 RAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCRG-SVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 + IVF +TKKE DEL +G+ FKTLS+Q +HGDIGQKQRD T+ FR G F+VLVATDVAARGIDI DVDLV+Q+ PP D DTYVHRSGRTGRAG G +V LF ++ RDIVRIE+++G GF+ PS EA + +A + A V D +F D+A LLAS + E ++A+CLAAI+R++ Sbjct: 252 KTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQARDIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDAAVSLLASSGS--PEDVVARCLAAIARRT 438
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A7S3ZWQ0_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ0_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.760e-57 Identity = 109/194 (56.19%), Postives = 143/194 (73.71%), Query Frame = 1 Query: 1 GSRAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCRGSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTE---LLLAKCLAAISRKSE 573 G R IVF TK+ECDELA G AF+ LS+QVLHGDIGQ QR+ T+ QFR+GQF VLVATDVAARGID+ VDLVVQ+R P D + YVHRSGRTGRAGR+GTAV L+ E+RD+ +ER G F+ G PSA V+ ++ A +A+ V D VVP+F+++A++L A E A ++ L+A+CLAA++R++E Sbjct: 389 GGRVIVFTATKRECDELAGGPAFQRLSAQVLHGDIGQSQREATLAQFRRGQFSVLVATDVAARGIDVKGVDLVVQFRTPRDAEGYVHRSGRTGRAGRDGTAVVLYDDREERDVRSLERETGVKFQRLGP-PSAGRVLEAASLDAARALTRVQDDVVPHFLETAKQLCADELAETSDEAASLVARCLAAVARQNE 581
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A7S2H5C4_9STRA (RNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H5C4_9STRA) HSP 1 Score: 198 bits (504), Expect = 4.590e-56 Identity = 105/189 (55.56%), Postives = 136/189 (71.96%), Query Frame = 1 Query: 7 RAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCR-GSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 + IVF +TK++ DEL +G FK+L++Q LHGD+GQKQRD T+ FR G F+VLVATDVAARGIDI DVDLVVQ+ PP D DTYVHRSGRTGRAGR+GT+V LF + RDIVRIER++G GF+ PS E+ ++ +A + A + D +F D+A LL E D + ++A+CLAAISR+S Sbjct: 471 KTIVFTETKRDADELVSGGVFKSLTAQALHGDVGQKQRDATLAAFRAGAFNVLVATDVAARGIDINDVDLVVQFEPPRDTDTYVHRSGRTGRAGRKGTSVLLFRPYQSRDIVRIERSLGHGFKFELAGPPSIESALSAAAKTSAIACRGIPDETANFFQDAASSLL--EDGEDPQQVVARCLAAISRRS 657
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A7S0CDF7_9STRA (RNA helicase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDF7_9STRA) HSP 1 Score: 195 bits (495), Expect = 6.390e-56 Identity = 106/189 (56.08%), Postives = 135/189 (71.43%), Query Frame = 1 Query: 7 RAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCR-GSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 + IVF +TK+E DEL +G FK+L++Q LHGDIGQKQRD T+N FR G F+VLVATDVAARGIDI DVDLV+QY+PP D DT+VHRSGRTGRAG++GT+V LF E RDIVRIER +G F+ PS EA + +A + A V V YF ++A LL +E E ++A+CLAAIS+++ Sbjct: 201 KTIVFTETKREADELVSGGVFKSLTAQALHGDIGQKQRDATLNAFRAGAFNVLVATDVAARGIDINDVDLVIQYQPPRDTDTFVHRSGRTGRAGKKGTSVILFGPYEARDIVRIERGLGHNFKFELVGPPSIEAALNAAAKTSAVACRGVPAETVDYFRNAASDLLETEGMT-AEDIVARCLAAISKRT 388
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Match: A0A7S4R924_9STRA (RNA helicase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R924_9STRA) HSP 1 Score: 198 bits (503), Expect = 7.350e-56 Identity = 104/189 (55.03%), Postives = 138/189 (73.02%), Query Frame = 1 Query: 7 RAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGQFHVLVATDVAARGIDIADVDLVVQYRPPPDPDTYVHRSGRTGRAGREGTAVTLFSSDEQRDIVRIERAIGKGFRCR-GSVPSAEAVMAQSATVALKAIDAVGDAVVPYFMDSARKLLASEAAADTELLLAKCLAAISRKS 570 + IVF +TK++ DEL +G+ FK+L++Q LHGD+GQKQRD T+ FR G F+VLVATDVAARGIDI DVDLV+Q+ PP D DTYVHRSGRTGRAGR+GT+V LF ++ RDIV+IER++G GF+ PS EA + +A + A +V + +F D+A LL E D + ++A+CLAAISR+S Sbjct: 405 KTIVFTETKRDADELVSGSIFKSLTAQALHGDVGQKQRDATLAAFRAGAFNVLVATDVAARGIDITDVDLVIQFEPPRDVDTYVHRSGRTGRAGRKGTSVLLFRPNQSRDIVKIERSLGHGFKFELAGPPSIEAALTAAAKTSAIACRSVPEETAKFFTDAAGSLL--ENGEDPQEVVARCLAAISRRS 591 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11982.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11982.1.1 >prot_P-wetherbeei_contig11982.1.1 ID=prot_P-wetherbeei_contig11982.1.1|Name=mRNA_P-wetherbeei_contig11982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp GSRAIVFAQTKKECDELAAGNAFKTLSSQVLHGDIGQKQRDVTINQFRKGback to top mRNA from alignment at P-wetherbeei_contig11982:7..1778+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11982.1.1 ID=mRNA_P-wetherbeei_contig11982.1.1|Name=mRNA_P-wetherbeei_contig11982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1772bp|location=Sequence derived from alignment at P-wetherbeei_contig11982:7..1778+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11982:7..1778+ >mRNA_P-wetherbeei_contig11982.1.1 ID=mRNA_P-wetherbeei_contig11982.1.1|Name=mRNA_P-wetherbeei_contig11982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig11982:7..1778+ (Phaeothamnion wetherbeei SAG_119_79)back to top |