mRNA_P-wetherbeei_contig11975.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11975.2.1
Unique NamemRNA_P-wetherbeei_contig11975.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A536Z1A0_9PROT (Cold-shock protein n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A536Z1A0_9PROT)

HSP 1 Score: 130 bits (327), Expect = 2.100e-38
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            M  GTVKWFND KGFGFITP+ GGKDLFAHFSAIQG G KSLRENQKVS+DVTTGPKGDQATNI+PLD
Sbjct:    1 MGTGTVKWFNDGKGFGFITPDSGGKDLFAHFSAIQGEGHKSLRENQKVSFDVTTGPKGDQATNIKPLD 68
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A522AQQ8_9BACT (Cold-shock protein n=3 Tax=Bacteria TaxID=2 RepID=A0A522AQQ8_9BACT)

HSP 1 Score: 130 bits (326), Expect = 2.900e-38
Identity = 57/67 (85.07%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPL 201
            M+ GTVKWFNDAKGFGFITP+ GGKD+FAHFSAIQG+GFKSL+ENQKVS+D+TTGPKGDQATNI+PL
Sbjct:    1 MATGTVKWFNDAKGFGFITPDGGGKDVFAHFSAIQGSGFKSLKENQKVSFDITTGPKGDQATNIKPL 67
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A1F3X9Y8_9PROT (Cold-shock protein n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3X9Y8_9PROT)

HSP 1 Score: 129 bits (323), Expect = 8.560e-38
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            MS GTVKWFND KGFGFITP+ GGKDLFAHFSAIQG GF+SL+ENQKVS+D+TTGPKG+QA NIRPLD
Sbjct:    1 MSTGTVKWFNDGKGFGFITPDGGGKDLFAHFSAIQGGGFRSLKENQKVSFDITTGPKGEQAINIRPLD 68
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A3D0ETK9_9PROT (Cold-shock protein n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A3D0ETK9_9PROT)

HSP 1 Score: 128 bits (322), Expect = 1.220e-37
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            MS GTVKWFND+KGFGFITP+DGGKDLF HFSAIQ NGFK+L ENQKVSYDVT+GPKGDQATNI+ +D
Sbjct:    1 MSTGTVKWFNDSKGFGFITPDDGGKDLFVHFSAIQSNGFKTLEENQKVSYDVTSGPKGDQATNIQSID 68
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A536Z8P8_9PROT (Cold-shock protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z8P8_9PROT)

HSP 1 Score: 128 bits (322), Expect = 1.220e-37
Identity = 56/68 (82.35%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            M+ GTVKWFND+KGFGF+TPEDGGKDLFAHFSAIQG+GFK+L+E Q+VSYDVTTGPKG QA+NIRP D
Sbjct:    1 MATGTVKWFNDSKGFGFVTPEDGGKDLFAHFSAIQGSGFKTLKEGQRVSYDVTTGPKGQQASNIRPAD 68
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A537C5A6_9PROT (Cold-shock protein n=3 Tax=Bacteria TaxID=2 RepID=A0A537C5A6_9PROT)

HSP 1 Score: 127 bits (320), Expect = 2.460e-37
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPL 201
            MS GTVKWFND+KGFGFITP+ GGKDLFAHFSAIQG+GFKSL+ENQKVS+DVT GPKGDQA NI+PL
Sbjct:    1 MSTGTVKWFNDSKGFGFITPDGGGKDLFAHFSAIQGSGFKSLKENQKVSFDVTAGPKGDQAVNIKPL 67
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: UPI00193BC55F (cold-shock protein n=1 Tax=Azospira restricta TaxID=404405 RepID=UPI00193BC55F)

HSP 1 Score: 127 bits (320), Expect = 2.460e-37
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            M+NGTVKWFNDAKGFGFITP DGG+DLFAHFSAIQGNGFKSL+ENQKV++DV TGPKG QA NIRP +
Sbjct:    1 MANGTVKWFNDAKGFGFITPADGGEDLFAHFSAIQGNGFKSLQENQKVTFDVVTGPKGKQAANIRPAE 68
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A521VKS9_9PROT (Cold-shock protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521VKS9_9PROT)

HSP 1 Score: 127 bits (319), Expect = 3.400e-37
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPL 201
            M+NGTVKWFNDAKGFGFITP+ GGKDLFAHFSAIQG+GFKSL++ QKVS+D+TTGPKG+QA NIRPL
Sbjct:    1 MANGTVKWFNDAKGFGFITPDGGGKDLFAHFSAIQGSGFKSLKDGQKVSFDITTGPKGEQAINIRPL 67
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BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A7U7GGE2_9GAMM (RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA n=9 Tax=Bacteria TaxID=2 RepID=A0A7U7GGE2_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 1.000e-36
Identity = 56/68 (82.35%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            MS GTVKWFN++KGFGFI+P+DGG DLFAHFSAIQ  GFK+LRENQKVS+DVTTGPKG QATNIRP+D
Sbjct:    1 MSTGTVKWFNESKGFGFISPDDGGDDLFAHFSAIQARGFKTLRENQKVSFDVTTGPKGKQATNIRPID 68
[Close]
BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Match: A0A536ZBY1_9PROT (Cold-shock protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZBY1_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.420e-36
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSYDVTTGPKGDQATNIRPLD 204
            M+ GTVKWFND+KGFGFITP+ GGKD+FAHFSAIQG G KSLRENQKVS+DVT GPKG QATNIRPLD
Sbjct:    1 MTTGTVKWFNDSKGFGFITPDGGGKDVFAHFSAIQGEGHKSLRENQKVSFDVTNGPKGAQATNIRPLD 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11975.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536Z1A0_9PROT2.100e-3886.76Cold-shock protein n=4 Tax=Betaproteobacteria TaxI... [more]
A0A522AQQ8_9BACT2.900e-3885.07Cold-shock protein n=3 Tax=Bacteria TaxID=2 RepID=... [more]
A0A1F3X9Y8_9PROT8.560e-3883.82Cold-shock protein n=3 Tax=unclassified Betaproteo... [more]
A0A3D0ETK9_9PROT1.220e-3783.82Cold-shock protein n=4 Tax=Betaproteobacteria TaxI... [more]
A0A536Z8P8_9PROT1.220e-3782.35Cold-shock protein n=1 Tax=Betaproteobacteria bact... [more]
A0A537C5A6_9PROT2.460e-3785.07Cold-shock protein n=3 Tax=Bacteria TaxID=2 RepID=... [more]
UPI00193BC55F2.460e-3783.82cold-shock protein n=1 Tax=Azospira restricta TaxI... [more]
A0A521VKS9_9PROT3.400e-3783.58Cold-shock protein n=2 Tax=unclassified Betaproteo... [more]
A0A7U7GGE2_9GAMM1.000e-3682.35RNA chaperone, transcription antiterminator, affec... [more]
A0A536ZBY1_9PROT1.420e-3683.82Cold-shock protein n=2 Tax=Betaproteobacteria bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11975contigP-wetherbeei_contig11975:1225..1431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123368.AUIS01000006_gene619
PFAMsCSD
Model size207
Max annot lvl225057|Acidithiobacillales
KEGG koko:K03704
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.52e-37
EggNOG OGsCOG1278@1|root,COG1278@2|Bacteria,1N6Q5@1224|Proteobacteria,1SCA7@1236|Gammaproteobacteria,2ND6Z@225057|Acidithiobacillales
DescriptionPFAM Cold-shock protein, DNA-binding
Cds size207
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.4317863-CDS-P-wetherbeei_contig11975:1224..14311683185933.4317863-CDS-P-wetherbeei_contig11975:1224..1431Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11975 1225..1431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11975.2.1prot_P-wetherbeei_contig11975.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11975 1225..1431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11975.2.1

>prot_P-wetherbeei_contig11975.2.1 ID=prot_P-wetherbeei_contig11975.2.1|Name=mRNA_P-wetherbeei_contig11975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MSNGTVKWFNDAKGFGFITPEDGGKDLFAHFSAIQGNGFKSLRENQKVSY
DVTTGPKGDQATNIRPLD*
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mRNA from alignment at P-wetherbeei_contig11975:1225..1431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11975.2.1 ID=mRNA_P-wetherbeei_contig11975.2.1|Name=mRNA_P-wetherbeei_contig11975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig11975:1225..1431- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTAACGGTACTGTTAAGTGGTTCAACGACGCCAAAGGTTTTGGCTT
TATCACACCTGAAGACGGCGGCAAGGACCTCTTTGCGCATTTCTCGGCAA
TCCAGGGCAATGGTTTCAAGAGCCTGCGTGAAAACCAGAAAGTTTCCTAC
GACGTCACGACCGGCCCCAAAGGCGATCAGGCGACGAACATCCGTCCGCT
CGATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11975:1225..1431-

>mRNA_P-wetherbeei_contig11975.2.1 ID=mRNA_P-wetherbeei_contig11975.2.1|Name=mRNA_P-wetherbeei_contig11975.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig11975:1225..1431- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTAACGGTACTGTTAAGTGGTTCAACGACGCCAAAGGTTTTGGCTT
TATCACACCTGAAGACGGCGGCAAGGACCTCTTTGCGCATTTCTCGGCAA
TCCAGGGCAATGGTTTCAAGAGCCTGCGTGAAAACCAGAAAGTTTCCTAC
GACGTCACGACCGGCCCCAAAGGCGATCAGGCGACGAACATCCGTCCGCT
CGATTAA
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