mRNA_P-wetherbeei_contig11968.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11968.1.1
Unique NamemRNA_P-wetherbeei_contig11968.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A2M7YSL7_9BACT (Uncharacterized protein n=1 Tax=bacterium CG_4_9_14_3_um_filter_65_15 TaxID=1975567 RepID=A0A2M7YSL7_9BACT)

HSP 1 Score: 176 bits (445), Expect = 1.190e-52
Identity = 88/178 (49.44%), Postives = 117/178 (65.73%), Query Frame = 1
Query:   28 VSWSDFAGGRHKPGSGYSYFTGSPEELLGLVKENWDGRKPGTGRTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTTAKGEAQSANFASVILYSKDTLGANN-ERSTEADWEVVSLVAGPVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKV 558
            + WSDFA  RH  G G+++F G+ EELLGLV++ W  R+PG GR+ L+EVV VPVPP +FMS T+ V   + L +E  RR+ HE  YVR  A G  +    A+V+LY+ DTL  N+  RS + DWEVV L+AGPV +EPMDP+TM RNM    GG+   YT EQ   ++ +WS+   V
Sbjct:   11 LGWSDFARARHVSGGGHTWFEGTEEELLGLVRKGWPRREPGAGRSGLDEVVIVPVPPDRFMSATVMVDETSTLRAEFTRRQPHEEGYVRVLATGPREEVRHAAVVLYAADTLLENDGRRSGDFDWEVVCLLAGPVADEPMDPLTMARNMLEKPGGTSCAYTAEQFAAAVWYWSRRAAV 188          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A496UQ06_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A496UQ06_9BACT)

HSP 1 Score: 167 bits (423), Expect = 5.120e-49
Identity = 85/179 (47.49%), Postives = 117/179 (65.36%), Query Frame = 1
Query:   28 VSWSDFAGGRHKPGSGYSYFTGSPEELLGLVKENWDGRKPGTGRTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTTAKGEAQSANFASVILYSKDTLGANN-ERSTEADWEVVSLVAGPVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKVQ 561
            + WSDFA  R+ PG  +++F G+ +ELL  V+  W  R+PG GR +L EVV VPV P  F+  T+ VT E +L +EL RR+ HE  YVR TA G  + A+FA+V+LYS  TL  N+  RS + DWE+V+L+A PV +EPMDP+TM RNM    GG+  NYT E+   +I +WS+    +
Sbjct:   38 LGWSDFARKRYVPGGDHTWFDGTGDELLNRVRSGWPRRRPGQGRADLTEVVIVPVDPAGFVCGTVLVTPEAKLTAELVRRQPHEDAYVRVTAAGPREEAHFANVVLYSAATLEQNDGTRSGDFDWEMVALLAAPVADEPMDPLTMARNMLAKPGGTPCNYTAEEFAAAIWYWSQRAAAE 216          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A496PUV1_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A496PUV1_9BACT)

HSP 1 Score: 164 bits (414), Expect = 6.440e-48
Identity = 80/178 (44.94%), Postives = 114/178 (64.04%), Query Frame = 1
Query:   28 VSWSDFAGGRHKPGSGYSYFTGSPEELLGLVKENWDGRKPGTGRTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTTAKGEAQSANFASVILYSKDTLGANN-ERSTEADWEVVSLVAGPVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKV 558
            + WSDFA  RH PG  +++F G+ +ELL LV+++W  R+PG GR  L++VV VPV P  F+S+T+ V   T LH+   RR+ HE  ++R TA G  +   FASV+LY+ DTL  N  +RS + DWEV  L+AGP + EPMDP+TM RNM    GG+   Y+  +  +++ FW+    V
Sbjct:   11 LGWSDFASRRHVPGGKHTWFEGTADELLDLVRDSWPRRRPGAGREGLDQVVVVPVKPAGFVSSTVKVEINTTLHAVFDRRQAHEDGFIRVTADGPREEVRFASVVLYAADTLLENEGKRSGDFDWEVACLIAGPFDAEPMDPLTMARNMLEKPGGTYCKYSALEFAEAVWFWAGRATV 188          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A2G6G3X4_9BACT (Uncharacterized protein n=1 Tax=bacterium DOLZORAL124_64_63 TaxID=2044883 RepID=A0A2G6G3X4_9BACT)

HSP 1 Score: 159 bits (403), Expect = 2.550e-46
Identity = 80/173 (46.24%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   28 VSWSDFAGGRHKPGSGYSYFTGSPEELLGLVKENWDGRKPGTGRTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTTAKGEAQSANFASVILYSKDTLGANNER-STEADWEVVSLVAGPVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWS 543
            + WSDFA  RH+P   ++++ GS  +LL LV++NW  RKPG GR +L +VV VPVPP  F+  T+ V   T LH+ L  R+  E  ++R TA+G  ++  FASV+LYS+ TL  N    S + DWEVV L+AG  E EPMDP+TM RN     GG+  +YT +Q  ++I +WS
Sbjct:   11 LGWSDFAAARHRPHGKHTWYEGSHAQLLDLVRKNWAARKPGAGRHDLSQVVVVPVPPAGFVGNTVKVDENTVLHAHLDCRQAGEDAFIRVTAEGRREAPRFASVVLYSRATLQENGGACSGDYDWEVVCLLAGQDETEPMDPLTMARNFLEKPGGTYASYTAQQFAEAIYYWS 183          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A6P1AYU3_9BACT (DUF3228 family protein (Fragment) n=1 Tax=bacterium LRH843 TaxID=2681972 RepID=A0A6P1AYU3_9BACT)

HSP 1 Score: 134 bits (336), Expect = 1.590e-37
Identity = 59/90 (65.56%), Postives = 78/90 (86.67%), Query Frame = 1
Query:  286 YVRTTAKGEAQSANFASVILYSKDTLGANNERSTEADWEVVSLVAGPVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTK 555
            Y+   ++GEA  A+FA V+LYS++TL  NNE+ST++DWE+VS +A PVENEPM+PVTMMRNM+G  GGSQV+Y+TE+LLD+I+FWSKHTK
Sbjct:    1 YLSVMSEGEAIPASFAKVVLYSRETLAENNEQSTDSDWELVSFLASPVENEPMNPVTMMRNMKGKPGGSQVDYSTEELLDAIDFWSKHTK 90          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A2D6MBX6_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D6MBX6_9ARCH)

HSP 1 Score: 106 bits (264), Expect = 1.250e-25
Identity = 59/160 (36.88%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  130 WDGRKPGTGRTNLEEVVAVPVPPTKFMSTTIAVTAETE------LHSELYRRREHEAPYVRTTA----------KGEAQSANFASVILYSKDTLGANN-ERSTEADWEVVSLVAGPVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKV 558
            WD R+PG G T L+  V VPVP   F+ TT+ +T + +      + S + +R E E  ++              K E +  NFA V+ YS + L  N  ER+T  DWE+V ++A PVENEPM P+ M RNM    GG+   YT  Q  +S+ +WS+  ++
Sbjct:   14 WDERQPGQGETTLDRKVVVPVPAIGFVCTTVLITEQMKNAWINPIRSVIRQREEGEDLFIGNELRPWAAKLQGIKIEPEPCNFAKVVCYSAEALLENGGERTTTDDWEIVCIIASPVENEPMSPLAMARNMLRKTGGTMGTYTAAQFAESVYYWSQRIRI 173          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A520VWP8_9BACT (DUF3228 family protein n=2 Tax=unclassified Bacteria TaxID=49928 RepID=A0A520VWP8_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 4.030e-22
Identity = 57/177 (32.20%), Postives = 95/177 (53.67%), Query Frame = 1
Query:   43 FAGGRHKPGSGYSYFTGSPEELLGLVKENWDGRKPGTGRTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTTA-KGEAQSANFASVILYSKDTLGANNERSTEADWEVVSLVAGP--VENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKVQP 564
            F+G  +     + +F    E+ + + K+   G +P      L+E         K +   + +T  T+L +   +RRE+E PY++  A  G+   A    +ILY  D L  N+E +T+ADWE++S+ A P  VE+ PM P+TMMRN   L GG++ NY++++  +S+ FW K   + P
Sbjct:   15 FSGKTYSEELSFDFFARHAEQKI-IHKDFRQGYRPEVIIVKLDEKYV-----NKVICPYVKITKNTKLSAHFLKRRENEEPYIQVRALNGKLIKAGNVELILYHHDILYENDENTTDADWELISINALPMGVESMPMGPITMMRNQLELIGGTKANYSSDEWAESVHFWQKFAPIDP 185          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A6J5RX00_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5RX00_9CAUD)

HSP 1 Score: 96.7 bits (239), Expect = 1.450e-21
Identity = 57/162 (35.19%), Postives = 89/162 (54.94%), Query Frame = 1
Query:   70 SGYSYFTGSPEELLGLVKENWDGRKPGTGRTNLEEVVAVPVPPT-KFMSTTIAVTAETELHSELYRRREHEAPYVRTTAKGEAQSANFASVILYSKDTLGANNERSTEADWEVVSLVAG-PVENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKH 549
            SG+S++ G+ E+L  LV   +      T +   + V+ V +     F S+ + V   T+L +    RR  E  Y+R   K   Q A + + +LY KD L  NNER T+A+WE+V++ A    E EPMDP TM RN   L GG++ +++ +Q  +SI +W+ H
Sbjct:   18 SGFSHYDGTWEQLENLVS-TYMSMSGCTRQGYKDGVILVDIDACDNFYSSIVKVNENTKLSASYGWRRPDEDGYIRIGTKANKQRAKYVTCVLYHKDVLDENNERETDAEWEIVAIKARVSKEEEPMDPYTMARNFLHLKGGTKGDFSAQQFAESIVYWNNH 178          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A7C7MBX9_9BACT (DUF3228 family protein n=2 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7C7MBX9_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.120e-21
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  202 KFMSTTIAVTAETELHSELYRRREHEAPYVRTTA-KGEAQSANFASVILYSKDTLGANNERSTEADWEVVSLVAGP--VENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKVQP 564
            +F+   + V   T L S L  RR  E PY++T A  G   SA    +I+Y  D L  N E ST ADWE++S+ A P  +E+ PM PVTMMRN   LAGG++  Y+TE+  +S+ FW ++  ++P
Sbjct:   94 EFVCQFVKVDKHTRLISRLVSRRPEEKPYIQTRAVTGTPLSAGAVQLIMYRHDVLAENQEYSTNADWELISINAIPEGLESLPMGPVTMMRNQLKLAGGTEAVYSTEEWAESVRFWQEYVALEP 217          
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Match: A0A2D9QLM4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D9QLM4_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 2.220e-21
Identity = 64/193 (33.16%), Postives = 101/193 (52.33%), Query Frame = 1
Query:    1 MVQVSGGQSVSWSDFAGGRHKPGSGYSYFTGSP-EELLGLVKENWDGRKPGTG-RTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTTA-KGEAQSANFASVILYSKDTLGANNERSTEADWEVVSLVAGP--VENEPMDPVTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKVQP 564
            M   S  + V+ ++F   R   GSG +Y T    E++     + +D      G R  +  V A P    +F    + +  +T+L +EL RRRE+E PY++  A  G+         +LY  D L  NNE ST+A+WE++S+ A P  +E  PM PVTMMRN   L GG+   Y++++  +++ FW K+  + P
Sbjct:    1 MAHFSSQKKVAVNEFVR-RXTAGSGKTYSTLLTFEQIAAHASDQFDKGYFSQGYREGVIIVNADPDYAQQFTCPYVQIDKDTKLKAELVRRRENEEPYIQVRALNGDPLKTGKVEXVLYRHDVLAENNEHSTDAEWELISIHAFPEGIEKLPMGPVTMMRNQLELKGGTAGTYSSDEWANAVNFWQKYAALYP 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2M7YSL7_9BACT1.190e-5249.44Uncharacterized protein n=1 Tax=bacterium CG_4_9_1... [more]
A0A496UQ06_9BACT5.120e-4947.49Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A496PUV1_9BACT6.440e-4844.94Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2G6G3X4_9BACT2.550e-4646.24Uncharacterized protein n=1 Tax=bacterium DOLZORAL... [more]
A0A6P1AYU3_9BACT1.590e-3765.56DUF3228 family protein (Fragment) n=1 Tax=bacteriu... [more]
A0A2D6MBX6_9ARCH1.250e-2536.88Uncharacterized protein n=1 Tax=Candidatus Pacearc... [more]
A0A520VWP8_9BACT4.030e-2232.20DUF3228 family protein n=2 Tax=unclassified Bacter... [more]
A0A6J5RX00_9CAUD1.450e-2135.19Uncharacterized protein n=1 Tax=uncultured Caudovi... [more]
A0A7C7MBX9_9BACT2.120e-2141.94DUF3228 family protein n=2 Tax=Candidatus Marinimi... [more]
A0A2D9QLM4_9BACT2.220e-2133.16Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11968contigP-wetherbeei_contig11968:904..1470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000017098
PFAMsDUF3228
Model size567
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-08
EggNOG OGs29VSF@1|root,2RXMS@2759|Eukaryota,1MEBQ@121069|Pythiales
Descriptionflagellar associated protein. Source PGD
Cds size567
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.2211802-CDS-P-wetherbeei_contig11968:903..14701683185933.2211802-CDS-P-wetherbeei_contig11968:903..1470Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11968 904..1470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11968.1.1prot_P-wetherbeei_contig11968.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11968 904..1470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11968.1.1

>prot_P-wetherbeei_contig11968.1.1 ID=prot_P-wetherbeei_contig11968.1.1|Name=mRNA_P-wetherbeei_contig11968.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MVQVSGGQSVSWSDFAGGRHKPGSGYSYFTGSPEELLGLVKENWDGRKPG
TGRTNLEEVVAVPVPPTKFMSTTIAVTAETELHSELYRRREHEAPYVRTT
AKGEAQSANFASVILYSKDTLGANNERSTEADWEVVSLVAGPVENEPMDP
VTMMRNMRGLAGGSQVNYTTEQLLDSIEFWSKHTKVQP*
back to top

mRNA from alignment at P-wetherbeei_contig11968:904..1470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11968.1.1 ID=mRNA_P-wetherbeei_contig11968.1.1|Name=mRNA_P-wetherbeei_contig11968.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig11968:904..1470+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCAGGTGTCCGGCGGACAGTCCGTGAGCTGGAGCGATTTTGCGGG TGGGCGTCACAAGCCGGGCAGCGGCTACTCTTACTTCACCGGAAGCCCCG AGGAGCTACTGGGCCTCGTGAAAGAAAACTGGGACGGTCGTAAACCGGGC ACCGGTCGCACGAATCTCGAGGAAGTGGTGGCGGTCCCCGTCCCGCCCAC CAAATTCATGTCCACCACCATCGCGGTCACGGCTGAGACCGAGCTTCATT CCGAACTCTACCGGCGCCGAGAGCACGAAGCTCCCTACGTTCGCACCACC GCCAAAGGCGAAGCCCAGTCTGCGAACTTCGCCTCCGTGATTCTCTACTC CAAGGACACTCTCGGTGCCAACAATGAGCGCTCAACCGAAGCTGATTGGG AGGTCGTCTCCCTGGTCGCCGGTCCCGTCGAAAACGAACCGATGGACCCT GTGACGATGATGCGTAACATGCGCGGCCTAGCTGGTGGCTCCCAGGTCAA CTACACCACGGAGCAGCTGCTCGACTCTATCGAATTCTGGTCCAAGCACA CCAAAGTTCAGCCCTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11968:904..1470+

>mRNA_P-wetherbeei_contig11968.1.1 ID=mRNA_P-wetherbeei_contig11968.1.1|Name=mRNA_P-wetherbeei_contig11968.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig11968:904..1470+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCAGGTGTCCGGCGGACAGTCCGTGAGCTGGAGCGATTTTGCGGG
TGGGCGTCACAAGCCGGGCAGCGGCTACTCTTACTTCACCGGAAGCCCCG
AGGAGCTACTGGGCCTCGTGAAAGAAAACTGGGACGGTCGTAAACCGGGC
ACCGGTCGCACGAATCTCGAGGAAGTGGTGGCGGTCCCCGTCCCGCCCAC
CAAATTCATGTCCACCACCATCGCGGTCACGGCTGAGACCGAGCTTCATT
CCGAACTCTACCGGCGCCGAGAGCACGAAGCTCCCTACGTTCGCACCACC
GCCAAAGGCGAAGCCCAGTCTGCGAACTTCGCCTCCGTGATTCTCTACTC
CAAGGACACTCTCGGTGCCAACAATGAGCGCTCAACCGAAGCTGATTGGG
AGGTCGTCTCCCTGGTCGCCGGTCCCGTCGAAAACGAACCGATGGACCCT
GTGACGATGATGCGTAACATGCGCGGCCTAGCTGGTGGCTCCCAGGTCAA
CTACACCACGGAGCAGCTGCTCGACTCTATCGAATTCTGGTCCAAGCACA
CCAAAGTTCAGCCCTAA
back to top