mRNA_P-wetherbeei_contig11963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11963.1.1
Unique NamemRNA_P-wetherbeei_contig11963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A127EVY0_9HYPH (tRNA-dihydrouridine synthase n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EVY0_9HYPH)

HSP 1 Score: 491 bits (1265), Expect = 1.020e-172
Identity = 248/311 (79.74%), Postives = 274/311 (88.10%), Query Frame = 1
Query:   40 IGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            IG++ + N V+LAPM+G+TDAPFRRLVS+LGAGLVVSEMTAS  L+EGD NAVLR EGQG G HVVQLAGCEPHWMAEGARIAE AGAD+IDINMGCPAK+VAN+QSGSALMRDLDHALTLIEATV AV LPVTLKMRLGWDDRSINAPELARRA+ AG++LITVHGRTRCQFY G+A+W AIRAV+ A+SIPLVVNGDI+ F     AL ASGADAVMVGRAAQGRPW PGQ+ARY+ TG +E APPL  Q  L+ ALY+EML HHGLRIGLKHARKHLGWALDAAAASA V  DTLKRWRG+VLTS+ P
Sbjct:   19 IGNVAVQNRVVLAPMSGVTDAPFRRLVSELGAGLVVSEMTASDALIEGDRNAVLRIEGQGVGTHVVQLAGCEPHWMAEGARIAEGAGADIIDINMGCPAKHVANKQSGSALMRDLDHALTLIEATVGAVALPVTLKMRLGWDDRSINAPELARRAQNAGIRLITVHGRTRCQFYTGKANWDAIRAVKDAISIPLVVNGDIRGFVHADEALRASGADAVMVGRAAQGRPWLPGQIARYIETGHKETAPPLTQQFKLVAALYDEMLDHHGLRIGLKHARKHLGWALDAAAASAGVAFDTLKRWRGTVLTSETP 329          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A1Q4DQJ3_9HYPH (tRNA-dihydrouridine synthase n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DQJ3_9HYPH)

HSP 1 Score: 457 bits (1177), Expect = 1.940e-159
Identity = 228/320 (71.25%), Postives = 272/320 (85.00%), Query Frame = 1
Query:   13 VSTGYQTLRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            + T +Q + IG++ + N V+LAPM+G+TD PFRRLV++LGAGLVVSEMTA A L  G  NA+LR EG+G G HVVQ+AGCEP+WMAEGAR+AEAAGA +IDINMGCPA++V N  SGSALMRDLDHA+TLIEAT+ AVR+PVTLKMRLGWD  S+NAPELARRAEAAGVQL+TVHGRTRCQFYKG+ADW+A+R V  AVSIP++VNGDI +F+D + ALA SGADAVMVGRAAQGRPWFPGQ+AR+LA   +E AP L VQL+++ ALYEEMLAHHG+RIG KHARKHLGWALDAAA +A V  D L+  R  VLT+++P
Sbjct:    5 IETAHQPIVIGNIQLANRVVLAPMSGVTDLPFRRLVARLGAGLVVSEMTACAALARGKQNALLRMEGEGVGTHVVQIAGCEPYWMAEGARMAEAAGAAIIDINMGCPARHVTNGASGSALMRDLDHAMTLIEATIGAVRVPVTLKMRLGWDHSSLNAPELARRAEAAGVQLVTVHGRTRCQFYKGDADWSAVRPVTDAVSIPVIVNGDICSFEDAEQALAESGADAVMVGRAAQGRPWFPGQIARHLAGADQEQAPDLDVQLSMVDALYEEMLAHHGVRIGAKHARKHLGWALDAAAETAGVDDDRLRDARHHVLTAEEP 324          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A6N7GKG1_9HYPH (tRNA-dihydrouridine synthase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GKG1_9HYPH)

HSP 1 Score: 454 bits (1168), Expect = 4.530e-158
Identity = 232/311 (74.60%), Postives = 266/311 (85.53%), Query Frame = 1
Query:   40 IGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            IG + + N V+LAPM+G+TDAPFRRL ++LGAGLVVSEMTA + LVEG  +A+LRAEGQG G+HVVQLAGCE HWMAEGAR+AEA GA +IDINMGCPA++V   +SGSALMR+LDHALTLI+ATV AV +PVTLKMRLGWDDR+INAPELARRAEAAGV++ITVHGRTRCQFYKG ADW A+RAV+ AVSIP+VVNGDI++FDD  AALAASGADAVMVGRAAQG+PW PGQ+ARYLATG+RE APPL VQL    ALY+EML HHG  +GL+HARKHLGWALD AAA A V    LK  R +VLT  DP
Sbjct:   11 IGTITLTNRVVLAPMSGVTDAPFRRLAARLGAGLVVSEMTACSKLVEGRRDALLRAEGQGVGLHVVQLAGCEAHWMAEGARMAEANGAAIIDINMGCPARHVTGGESGSALMRNLDHALTLIDATVGAVSVPVTLKMRLGWDDRTINAPELARRAEAAGVRMITVHGRTRCQFYKGRADWTAVRAVKRAVSIPVVVNGDIESFDDADAALAASGADAVMVGRAAQGKPWLPGQIARYLATGRRESAPPLAVQLGQTLALYDEMLTHHG-SVGLRHARKHLGWALDTAAAMAGVPAARLKAHRENVLTQIDP 320          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A345ZSJ6_9HYPH (tRNA-dihydrouridine synthase n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZSJ6_9HYPH)

HSP 1 Score: 451 bits (1160), Expect = 7.730e-157
Identity = 225/313 (71.88%), Postives = 260/313 (83.07%), Query Frame = 1
Query:   34 LRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            L+IG +P+PNPV+LAPM+GITDAPFRRL   LGAGLVVSEMTA   L  G+  A +R+EG+G  IHVVQLAGCE HWMAEGARIAEA GA +IDINMGCP+K V N  SGSALMRDLDHALTLIEATV AV++PVTLKMRLGWD  S+NAP+LARRAEAAGVQ+ITVHGRTRCQFY G ADW+A+RAV+ AV +P+VVNGDI++FDD  AAL +SGADAVM+GRAAQGRPW PGQ+AR+LATG+R   P L  QL LI  LY+EM+ HHG+RIG +HARKHLGWALD AAASA    D LK  R  VLT+++P
Sbjct:   11 LQIGTIPVPNPVVLAPMSGITDAPFRRLAEGLGAGLVVSEMTACGGLARGEREAAVRSEGRGVAIHVVQLAGCEAHWMAEGARIAEAQGAHIIDINMGCPSKQVTNGASGSALMRDLDHALTLIEATVGAVKVPVTLKMRLGWDASSLNAPDLARRAEAAGVQMITVHGRTRCQFYTGSADWSAVRAVKEAVGVPVVVNGDIRSFDDAVAALESSGADAVMIGRAAQGRPWVPGQVARFLATGERGDDPSLSEQLNLIQTLYDEMITHHGVRIGRRHARKHLGWALDCAAASAGAAADVLKHHRSRVLTAEEP 323          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: Q1QM98_NITHX (tRNA-dihydrouridine synthase n=1 Tax=Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14) TaxID=323097 RepID=Q1QM98_NITHX)

HSP 1 Score: 447 bits (1150), Expect = 3.170e-155
Identity = 228/319 (71.47%), Postives = 257/319 (80.56%), Query Frame = 1
Query:   16 STGYQTLRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            S+G     +GD+PIP  VLLAPM+GITD PFR L   LGAGLVVSEMTAS  LV G P +VLR E  G G HVVQLAGCE HWMAEGARIAE AGAD+IDINMGCPA++V   QSGSALMRDLDHAL LIEATV AV++PVTLKMRLGWDDRS+NAP LA+RAE+AGVQ++TVHGRTRCQFYKG ADW A+RAV+ AV IP+VVNGDI +FD   AAL ASGADAVMVGR AQG+PW PGQ+ R L TG  EP P L  QLA I ALY+++L H+GLRIGL+HARKHLGWALD AAA  +V    LK WRG +LT+DDP
Sbjct:   11 SSGLGPFTVGDIPIPGRVLLAPMSGITDRPFRGLAEALGAGLVVSEMTASDDLVRGRPMSVLRCEATGGGPHVVQLAGCETHWMAEGARIAEGAGADIIDINMGCPARHVTGGQSGSALMRDLDHALRLIEATVGAVKVPVTLKMRLGWDDRSLNAPALAQRAESAGVQMMTVHGRTRCQFYKGSADWQAVRAVKDAVDIPVVVNGDITSFDAAVAALEASGADAVMVGRGAQGQPWMPGQIGRRLETGIAEPPPSLADQLAYIHALYDDLLRHYGLRIGLRHARKHLGWALDVAAAVGSVPTSVLKTWRGKILTADDP 329          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: UPI001BAB2FA1 (tRNA dihydrouridine synthase DusB n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BAB2FA1)

HSP 1 Score: 444 bits (1143), Expect = 2.090e-154
Identity = 226/313 (72.20%), Postives = 260/313 (83.07%), Query Frame = 1
Query:   34 LRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            ++IGD+ + N VLLAPM+G+TDAPFRRLV++LGAGLVVSEMTAS  LV G P + LR E  G G HVVQLAGCE  WMAEGARIAEAAGAD+IDINMGCPA++V   QSGSALMRDLDHALTLIEAT+ AV++PVTLKMRLGWDDRSINAPELARRAE+AGVQ+ITVHGRTRCQFYKG+ADWAA+RAV+ AVSIPLVVNGDI +F+   +AL  SGADAVMVGR AQG+PW PGQ+ R L TG  E APPL  QL  + ALY+E+  H+GLR+GL+HARKHLGWALD AA  +     TLK WR  +LTSD+P
Sbjct:    1 MKIGDIELANRVLLAPMSGVTDAPFRRLVARLGAGLVVSEMTASDDLVNGKPMSRLRCEAAGIGPHVVQLAGCEARWMAEGARIAEAAGADIIDINMGCPARHVTGGQSGSALMRDLDHALTLIEATISAVKVPVTLKMRLGWDDRSINAPELARRAESAGVQMITVHGRTRCQFYKGDADWAAVRAVKQAVSIPLVVNGDITSFEMAVSALEKSGADAVMVGRGAQGQPWLPGQVGRRLDTGTTEAAPPLTEQLNHVRALYDEVCRHYGLRVGLRHARKHLGWALDVAALYSRAPAATLKGWRQKILTSDEP 313          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A7G6TWQ4_9BRAD (tRNA-dihydrouridine synthase n=13 Tax=Tardiphaga TaxID=1395974 RepID=A0A7G6TWQ4_9BRAD)

HSP 1 Score: 442 bits (1136), Expect = 3.570e-153
Identity = 223/324 (68.83%), Postives = 265/324 (81.79%), Query Frame = 1
Query:    1 LNRPVSTGYQTLRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            +  P S   + L+IG + I N V+LAPM+GITDAPFRRL ++LGAGLVVSEMTAS  LV G P +VLR E  G G HVVQLAGCE HWMAEGAR+AEAAGAD+IDINMGCPA++V   QSGSALMRDLDHAL LIEAT+ AV++PVTLKMRLGWDDR++NAP+LA+RAE AGVQLITVHGRTRCQFYKGEADW+A+R V+ AVSIP++VNGDI ++D   +AL  SGADAVM+GR AQG PW PGQ+ R L TG  E  P L  QLA I ALY+++++H+GLRIGL+HARKHLGWALDAAAA++    +TLK WR  +LTS+DP
Sbjct:    1 MTTPDSVYSKPLQIGGIEIANRVVLAPMSGITDAPFRRLTAELGAGLVVSEMTASDDLVNGRPMSVLRCEATGIGPHVVQLAGCETHWMAEGARVAEAAGADIIDINMGCPARHVTGGQSGSALMRDLDHALKLIEATIAAVKVPVTLKMRLGWDDRTLNAPDLAKRAEEAGVQLITVHGRTRCQFYKGEADWSAVRPVKDAVSIPVIVNGDITSYDKAVSALKMSGADAVMMGRGAQGMPWLPGQIGRRLETGIEEAVPSLQQQLAYICALYDDVISHYGLRIGLRHARKHLGWALDAAAATSCAPTETLKTWRQKILTSEDP 324          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A508TK06_9BRAD (tRNA-dihydrouridine synthase n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TK06_9BRAD)

HSP 1 Score: 441 bits (1134), Expect = 7.200e-153
Identity = 224/319 (70.22%), Postives = 257/319 (80.56%), Query Frame = 1
Query:   16 STGYQTLRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            S     L+IGD+ + N VLLAPM+GITDAPFRRL + LGAGLVVSEMTAS  LV G P + LR E  G G HVVQLAGC   WMAEGARIAEAAGAD+IDINMGCPA++V   QSGSALMRDLDHALTLIEAT+ AV++PVTLKMRLGWDDRS+NAPELARRAE AGVQ+ITVHGRTRCQFYKGEADW AIRAV+ AV++P+VVNGD+ TFD    AL  SGADAVM+GR AQG+PW PGQ+ R L TG  E APPL  QL  + ALY+E+ +H+GLR+GLKHARKHLGWAL+ AAA +     TLK WR  +LTS++P
Sbjct:    6 SVARNPLKIGDIAVANRVLLAPMSGITDAPFRRLTAALGAGLVVSEMTASDDLVNGKPMSKLRCEAAGIGPHVVQLAGCGTRWMAEGARIAEAAGADIIDINMGCPARHVTGGQSGSALMRDLDHALTLIEATIAAVKVPVTLKMRLGWDDRSLNAPELARRAEGAGVQMITVHGRTRCQFYKGEADWQAIRAVKDAVAVPVVVNGDVSTFDKAVTALEQSGADAVMIGRGAQGQPWLPGQVGRRLETGIAEAAPPLAEQLKHVRALYDEVCSHYGLRVGLKHARKHLGWALEVAAAYSCAPAATLKSWRQKILTSEEP 324          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A1M3CD81_9BRAD (tRNA-dihydrouridine synthase n=2 Tax=unclassified Nitrobacter TaxID=2620411 RepID=A0A1M3CD81_9BRAD)

HSP 1 Score: 441 bits (1133), Expect = 1.140e-152
Identity = 228/323 (70.59%), Postives = 259/323 (80.19%), Query Frame = 1
Query:    4 NRPVSTGYQTLRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            +RP S     L IGD+PI + V LAPM+GITD PFRRL   LGAGLVVSEMTAS  LV G P +VLR E  G G HVVQLAGCE HWMAEGARIAEAAGAD+IDINMGCPA++V   QSGSALMRDLDHAL LIEATV AV++PVTLK+RLGWDDRS+NAP LA+RAE+AGV++ITVHGRTRCQFYKG ADW A+RAV+ AV IP+VVNGDI +F+   AAL  S ADAVMVGR AQG+PW PGQ+ R L TG  EP P L  QLA I ALY+++L H+GLRIGL+HARKHLGWAL  AAAS NV+   LK WRG +LT+DDP
Sbjct:    6 SRPAS-DQNPLMIGDIPIASRVFLAPMSGITDRPFRRLAESLGAGLVVSEMTASDDLVRGRPMSVLRCEATGGGPHVVQLAGCETHWMAEGARIAEAAGADIIDINMGCPARHVTGGQSGSALMRDLDHALRLIEATVGAVKVPVTLKIRLGWDDRSLNAPALAQRAESAGVRMITVHGRTRCQFYKGRADWQAVRAVKQAVRIPVVVNGDITSFEAAVAALEESTADAVMVGRGAQGQPWMPGQIGRRLETGVAEPPPSLADQLAYIRALYDDLLRHYGLRIGLRHARKHLGWALGIAAASGNVSTSVLKIWRGKILTADDP 327          
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Match: A0A4Q8R2B7_9BRAD (tRNA-dihydrouridine synthase n=7 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q8R2B7_9BRAD)

HSP 1 Score: 440 bits (1131), Expect = 1.400e-152
Identity = 221/313 (70.61%), Postives = 260/313 (83.07%), Query Frame = 1
Query:   34 LRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVSEMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAGADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKMRLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVRAAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARYLATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAAAASANVTLDTLKRWRGSVLTSDDP 972
            ++IGD+ + NPVLLAPM+G+TDAPFRRL + LGAGLVVSEMTAS  L +G P ++LR E  G G HVVQLAGCE  WMAEGARIAEAAGAD+IDINMGCPA++V   QSGSALMRDLDHA +LIEAT+ AV++PVTLKMRLGWDDR+ NAPELARRA+AAGVQ++TVHGRTRCQFYKGEADWAA+R VR AVSIPLVVNGDI +F+ +  AL  SGADAVM+GR AQG+PW PGQ+AR L TG  E APPL  QL+ I  LY+ +L+H+G+R+GLKHARKHLGWAL+ AA  +     TLK WR S+LTSD+P
Sbjct:    1 MKIGDITVANPVLLAPMSGVTDAPFRRLAASLGAGLVVSEMTASDDLAQGRPISLLRCEAAGIGPHVVQLAGCEARWMAEGARIAEAAGADIIDINMGCPARHVTGGQSGSALMRDLDHATSLIEATIAAVKVPVTLKMRLGWDDRTRNAPELARRAQAAGVQMVTVHGRTRCQFYKGEADWAAVREVRDAVSIPLVVNGDITSFERVVTALDESGADAVMIGRGAQGQPWLPGQIARRLETGIAEQAPPLAEQLSHIRELYDAVLSHYGVRVGLKHARKHLGWALEIAAHCSRAPAATLKGWRQSILTSDEP 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EVY0_9HYPH1.020e-17279.74tRNA-dihydrouridine synthase n=2 Tax=Rhodoplanes s... [more]
A0A1Q4DQJ3_9HYPH1.940e-15971.25tRNA-dihydrouridine synthase n=1 Tax=Rhizobiales b... [more]
A0A6N7GKG1_9HYPH4.530e-15874.60tRNA-dihydrouridine synthase n=1 Tax=Hyphomicrobia... [more]
A0A345ZSJ6_9HYPH7.730e-15771.88tRNA-dihydrouridine synthase n=1 Tax=Pseudolabrys ... [more]
Q1QM98_NITHX3.170e-15571.47tRNA-dihydrouridine synthase n=1 Tax=Nitrobacter h... [more]
UPI001BAB2FA12.090e-15472.20tRNA dihydrouridine synthase DusB n=1 Tax=Bradyrhi... [more]
A0A7G6TWQ4_9BRAD3.570e-15368.83tRNA-dihydrouridine synthase n=13 Tax=Tardiphaga T... [more]
A0A508TK06_9BRAD7.200e-15370.22tRNA-dihydrouridine synthase n=5 Tax=Bradyrhizobiu... [more]
A0A1M3CD81_9BRAD1.140e-15270.59tRNA-dihydrouridine synthase n=2 Tax=unclassified ... [more]
A0A4Q8R2B7_9BRAD1.400e-15270.61tRNA-dihydrouridine synthase n=7 Tax=Bradyrhizobiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11963contigP-wetherbeei_contig11963:2..973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog323097.Nham_1835
Preferred namedusB
PFAMsDus
Model size972
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K05540
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-156
EggNOG OGsCOG0042@1|root,COG0042@2|Bacteria,1MV5V@1224|Proteobacteria,2TRC8@28211|Alphaproteobacteria,3JSGQ@41294|Bradyrhizobiaceae
DescriptionCatalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Cds size972
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.1292388-CDS-P-wetherbeei_contig11963:1..9731683185933.1292388-CDS-P-wetherbeei_contig11963:1..973Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11963 2..973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11963.1.1prot_P-wetherbeei_contig11963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11963 2..973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11963.1.1

>prot_P-wetherbeei_contig11963.1.1 ID=prot_P-wetherbeei_contig11963.1.1|Name=mRNA_P-wetherbeei_contig11963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
LNRPVSTGYQTLRIGDLPIPNPVLLAPMTGITDAPFRRLVSQLGAGLVVS
EMTASALLVEGDPNAVLRAEGQGTGIHVVQLAGCEPHWMAEGARIAEAAG
ADVIDINMGCPAKNVANRQSGSALMRDLDHALTLIEATVDAVRLPVTLKM
RLGWDDRSINAPELARRAEAAGVQLITVHGRTRCQFYKGEADWAAIRAVR
AAVSIPLVVNGDIKTFDDMQAALAASGADAVMVGRAAQGRPWFPGQLARY
LATGQREPAPPLGVQLALITALYEEMLAHHGLRIGLKHARKHLGWALDAA
AASANVTLDTLKRWRGSVLTSDDP
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mRNA from alignment at P-wetherbeei_contig11963:2..973-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11963.1.1 ID=mRNA_P-wetherbeei_contig11963.1.1|Name=mRNA_P-wetherbeei_contig11963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig11963:2..973- (Phaeothamnion wetherbeei SAG_119_79)
TTGAATAGACCGGTTTCAACAGGCTATCAGACGCTTCGGATCGGCGATTT GCCGATTCCGAATCCGGTGCTGCTTGCGCCGATGACCGGCATCACCGATG CGCCATTCCGGCGGCTGGTGTCACAATTGGGCGCCGGGCTCGTCGTTTCG GAAATGACCGCCAGCGCCTTGCTGGTCGAGGGCGATCCCAACGCCGTGCT GCGTGCCGAAGGGCAGGGCACCGGCATCCACGTGGTGCAACTCGCCGGCT GCGAGCCGCACTGGATGGCCGAAGGCGCCCGCATCGCCGAAGCCGCGGGC GCCGACGTCATCGACATCAACATGGGCTGCCCGGCGAAAAACGTTGCCAA CCGGCAATCCGGCTCGGCGCTGATGCGCGACCTGGATCATGCGCTGACGC TGATCGAGGCGACCGTCGACGCGGTGCGCCTTCCGGTCACGCTCAAGATG CGGCTCGGCTGGGACGACCGATCGATCAACGCACCGGAGCTTGCGCGCCG CGCGGAAGCCGCCGGCGTGCAACTCATCACCGTGCATGGCCGCACGCGCT GCCAGTTCTACAAGGGCGAGGCCGACTGGGCCGCCATCCGCGCCGTCAGG GCCGCAGTCTCGATCCCGCTCGTCGTCAACGGCGACATCAAGACCTTCGA CGATATGCAAGCCGCGCTCGCCGCCTCAGGCGCCGACGCGGTGATGGTGG GACGCGCGGCGCAGGGCCGGCCTTGGTTCCCGGGCCAGCTCGCGCGCTAC CTCGCCACCGGCCAGCGCGAGCCGGCGCCACCGCTCGGCGTGCAGCTTGC GCTCATTACCGCGCTCTACGAGGAGATGCTGGCGCATCACGGCCTGCGCA TCGGGCTCAAGCATGCGCGCAAGCATCTCGGCTGGGCCCTCGACGCCGCG GCGGCCAGCGCGAACGTGACGCTCGACACGTTGAAGCGCTGGCGCGGCAG CGTGCTCACAAGCGATGACCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11963:2..973-

>mRNA_P-wetherbeei_contig11963.1.1 ID=mRNA_P-wetherbeei_contig11963.1.1|Name=mRNA_P-wetherbeei_contig11963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig11963:2..973- (Phaeothamnion wetherbeei SAG_119_79)
TTGAATAGACCGGTTTCAACAGGCTATCAGACGCTTCGGATCGGCGATTT
GCCGATTCCGAATCCGGTGCTGCTTGCGCCGATGACCGGCATCACCGATG
CGCCATTCCGGCGGCTGGTGTCACAATTGGGCGCCGGGCTCGTCGTTTCG
GAAATGACCGCCAGCGCCTTGCTGGTCGAGGGCGATCCCAACGCCGTGCT
GCGTGCCGAAGGGCAGGGCACCGGCATCCACGTGGTGCAACTCGCCGGCT
GCGAGCCGCACTGGATGGCCGAAGGCGCCCGCATCGCCGAAGCCGCGGGC
GCCGACGTCATCGACATCAACATGGGCTGCCCGGCGAAAAACGTTGCCAA
CCGGCAATCCGGCTCGGCGCTGATGCGCGACCTGGATCATGCGCTGACGC
TGATCGAGGCGACCGTCGACGCGGTGCGCCTTCCGGTCACGCTCAAGATG
CGGCTCGGCTGGGACGACCGATCGATCAACGCACCGGAGCTTGCGCGCCG
CGCGGAAGCCGCCGGCGTGCAACTCATCACCGTGCATGGCCGCACGCGCT
GCCAGTTCTACAAGGGCGAGGCCGACTGGGCCGCCATCCGCGCCGTCAGG
GCCGCAGTCTCGATCCCGCTCGTCGTCAACGGCGACATCAAGACCTTCGA
CGATATGCAAGCCGCGCTCGCCGCCTCAGGCGCCGACGCGGTGATGGTGG
GACGCGCGGCGCAGGGCCGGCCTTGGTTCCCGGGCCAGCTCGCGCGCTAC
CTCGCCACCGGCCAGCGCGAGCCGGCGCCACCGCTCGGCGTGCAGCTTGC
GCTCATTACCGCGCTCTACGAGGAGATGCTGGCGCATCACGGCCTGCGCA
TCGGGCTCAAGCATGCGCGCAAGCATCTCGGCTGGGCCCTCGACGCCGCG
GCGGCCAGCGCGAACGTGACGCTCGACACGTTGAAGCGCTGGCGCGGCAG
CGTGCTCACAAGCGATGACCCC
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