mRNA_P-wetherbeei_contig11935.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11935.4.1
Unique NamemRNA_P-wetherbeei_contig11935.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11935.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11935contigP-wetherbeei_contig11935:1726..2036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.1591687-CDS-P-wetherbeei_contig11935:1727..20361683185932.1591687-CDS-P-wetherbeei_contig11935:1727..2036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11935 1728..2036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11935.4.1prot_P-wetherbeei_contig11935.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11935 1728..2036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11935.4.1

>prot_P-wetherbeei_contig11935.4.1 ID=prot_P-wetherbeei_contig11935.4.1|Name=mRNA_P-wetherbeei_contig11935.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
DSYFGGGQGARACSGGRERAAAGEHGLHRCPSDGLAAPVRVVVGSRLAGT
AHYFWLSHYSICPFPSCFLCGRCIESILSRMFHWHPCRSRNAVGFSHEKW
NHP
back to top

mRNA from alignment at P-wetherbeei_contig11935:1726..2036-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11935.4.1 ID=mRNA_P-wetherbeei_contig11935.4.1|Name=mRNA_P-wetherbeei_contig11935.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=311bp|location=Sequence derived from alignment at P-wetherbeei_contig11935:1726..2036- (Phaeothamnion wetherbeei SAG_119_79)
GATTCCTACTTTGGTGGAGGGCAAGGCGCTCGCGCTTGTAGCGGTGGGCG
AGAGCGGGCGGCTGCTGGCGAGCATGGACTGCACCGATGTCCCAGCGACG
GCCTTGCAGCCCCGGTGAGGGTGGTGGTCGGCTCACGTTTGGCTGGCACC
GCGCACTACTTCTGGTTATCGCATTACTCCATCTGTCCGTTCCCGTCTTG
CTTCCTCTGTGGGCGTTGCATCGAGAGTATTTTGAGTCGAATGTTTCATT
GGCACCCTTGTCGTTCGCGGAATGCCGTTGGGTTCTCGCACGAGAAATGG
AATCACCCGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11935:1726..2036-

>mRNA_P-wetherbeei_contig11935.4.1 ID=mRNA_P-wetherbeei_contig11935.4.1|Name=mRNA_P-wetherbeei_contig11935.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig11935:1726..2036- (Phaeothamnion wetherbeei SAG_119_79)
GATTCCTACTTTGGTGGAGGGCAAGGCGCTCGCGCTTGTAGCGGTGGGCG
AGAGCGGGCGGCTGCTGGCGAGCATGGACTGCACCGATGTCCCAGCGACG
GCCTTGCAGCCCCGGTGAGGGTGGTGGTCGGCTCACGTTTGGCTGGCACC
GCGCACTACTTCTGGTTATCGCATTACTCCATCTGTCCGTTCCCGTCTTG
CTTCCTCTGTGGGCGTTGCATCGAGAGTATTTTGAGTCGAATGTTTCATT
GGCACCCTTGTCGTTCGCGGAATGCCGTTGGGTTCTCGCACGAGAAATGG
AATCACCCG
back to top