mRNA_P-wetherbeei_contig11923.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11923.3.1
Unique NamemRNA_P-wetherbeei_contig11923.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: UPI001FF05FC8 (PA0069 family radical SAM protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI001FF05FC8)

HSP 1 Score: 406 bits (1044), Expect = 1.810e-139
Identity = 211/278 (75.90%), Postives = 234/278 (84.17%), Query Frame = 1
Query:    1 MPTLIDNRPSISFDPAVTGAGRLTALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            M T+++ RP  S     TG  +LT+LPQ  RGRGAR+N   RY++N   F DDGW+SLA++P LKT IF EQPKTII+RN SPDISFDRSINPYRGCEHGCVYCYARP+HAYMGLSPGLDFESKLFIKPNAAALLREELTA NY+P  IALG+NTDPYQPIER YRITRQ++EVL EFNHP GIVTKSA VLRDLD+L  MAE+GLVKVAISVTTLD  LAR+MEPRASTP KR+ AL +LS AGIPTVVMIGPVIP +ND EIE ILKAA  AGVKE
Sbjct:    1 MATILEMRPG-SGTGIGTGGAKLTSLPQLERGRGARSNPAPRYDQNTAEFVDDGWQSLAEVPRLKTEIFTEQPKTIISRNTSPDISFDRSINPYRGCEHGCVYCYARPSHAYMGLSPGLDFESKLFIKPNAAALLREELTATNYKPAVIALGANTDPYQPIERDYRITRQVIEVLREFNHPFGIVTKSANVLRDLDLLQPMAEKGLVKVAISVTTLDPALARSMEPRASTPMKRMAALELLSKAGIPTVVMIGPVIPGLNDSEIENILKAARNAGVKE 277          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: A0A6G6WVW2_9HYPH (PA0069 family radical SAM protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WVW2_9HYPH)

HSP 1 Score: 402 bits (1033), Expect = 8.800e-138
Identity = 203/278 (73.02%), Postives = 226/278 (81.29%), Query Frame = 1
Query:    1 MPTLIDNRPSISFDPAVTGAGRLTALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            M TLID R +   D +  GAGR   LPQ  RGRGA  N  GRYE++G + FDDGW++L DLPPLKTT++EE PK II  N SPDISF +SINPYRGCEHGC YCYARPTHAYMGLSPGLDFESKLF K NAAALLR EL+ P+Y P TIALG+NTDPYQPIER YRITRQILEVLSEFNHPVGIVTKSALVLRDLDILT MA R LVKVA+SVTTLD KLARAMEPRA+TP +RL A+  LS AG+PTVVM  P+IP +ND EIE++LKA   AG +E
Sbjct:    1 MTTLIDRRQTSGLDLSALGAGRYATLPQHQRGRGAVVNMPGRYERHGTALFDDGWQTLEDLPPLKTTVYEETPKKIITTNDSPDISFRQSINPYRGCEHGCSYCYARPTHAYMGLSPGLDFESKLFAKTNAAALLRAELSNPHYEPLTIALGANTDPYQPIEREYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTDMARRNLVKVAVSVTTLDAKLARAMEPRAATPTRRLGAIEALSKAGVPTVVMTAPIIPGLNDSEIESLLKAGHAAGARE 278          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: A0A2W2APT8_9HYPH (Radical SAM protein n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2APT8_9HYPH)

HSP 1 Score: 390 bits (1002), Expect = 4.500e-133
Identity = 198/278 (71.22%), Postives = 225/278 (80.94%), Query Frame = 1
Query:    1 MPTLIDNRPSISFDPAVTGAGRLTALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            M TLID R +++ DPA  G GR+TAL  Q RGRGA  N  GR+E    S FDDGW+ L DLP  KTT+FEE+PK+II RN SPD+ FD+SINPYRGCEHGC YCYARP HAYMGLSPGLDFESKLF KP AA LLR EL A  Y PRTIALG+NTD YQP+ER  RITR +LEV++EFNHPVGIVTKSALV RD+DIL  MA++GLVKVA+SVT+LD +LARAMEPRA+TPAKRL A+  LSAAGIPTVVM+ P+IPAVND EIEAIL AA  AG +E
Sbjct:    1 MSTLIDRRRALAPDPAALGEGRMTALSSQARGRGAGVNMSGRFEAYTRSLFDDGWQGLEDLPAFKTTVFEEKPKSIITRNDSPDVGFDQSINPYRGCEHGCSYCYARPAHAYMGLSPGLDFESKLFAKPEAAKLLRAELLAKGYVPRTIALGANTDAYQPVERERRITRALLEVMAEFNHPVGIVTKSALVTRDIDILAPMAKKGLVKVAVSVTSLDARLARAMEPRAATPAKRLAAIEQLSAAGIPTVVMVAPIIPAVNDAEIEAILAAAKTAGAQE 278          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: A0A7Y2BNQ7_9HYPH (PA0069 family radical SAM protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BNQ7_9HYPH)

HSP 1 Score: 379 bits (972), Expect = 1.510e-128
Identity = 195/278 (70.14%), Postives = 223/278 (80.22%), Query Frame = 1
Query:    1 MPTLIDNRPSISFDPAVTGAGRLTALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            M T++D R  + F  +V    +        R RGAR+N  GR+EK+   F DDGW++LAD+P L+T + EE  KTIIARNQSPDISFDRSINPYRGCEHGC YCYARPTHA MGLSPGLDFE+KLF KPNAA LLR EL  P Y+P TIALG+NTDPYQPIER YRITRQ+LEVLSEF+HPVGIVTKSA VLRDLDIL  MAE+GLVKVA+SVTTLD KLARAMEPRASTPAKRL+A+ +L+ AG+P  VM+ PVIPA+ND EIE IL AA+VAG  E
Sbjct:    1 MTTVLDKRARLDF--SVQDGPQSAVAAANARRRGARSNQSGRHEKHRYHFIDDGWQNLADVPALETHVSEETAKTIIARNQSPDISFDRSINPYRGCEHGCSYCYARPTHANMGLSPGLDFETKLFAKPNAAELLRAELLNPKYKPATIALGTNTDPYQPIERRYRITRQVLEVLSEFDHPVGIVTKSATVLRDLDILQPMAEKGLVKVALSVTTLDAKLARAMEPRASTPAKRLQAIELLAKAGVPAAVMVAPVIPALNDHEIEPILGAASVAGATE 276          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: UPI0010CA1CB1 (PA0069 family radical SAM protein n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010CA1CB1)

HSP 1 Score: 373 bits (958), Expect = 1.760e-126
Identity = 187/252 (74.21%), Postives = 214/252 (84.92%), Query Frame = 1
Query:   70 TALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAG 825
            TALP Q RGRGAR+N+ GR+E+    F DDGW++  +LP L+T++ EE+PK+II RN SPDISFD+SINPY+GCEHGC YCYARPTHAY GLSPGLDFE+KLF K NAA LLR EL+ P Y P+ IALG+NTDPYQP+ER YRITRQILEVL+EFNHPVGIVTKSALVLRDLDIL  MA R LV+VAISVT+LD KL+R+MEPRASTP KRLEAL VLSAAG+ T VM+ PVIP+VND EIEAIL AAA AG
Sbjct:   18 TALPGQTRGRGARSNESGRFERLSRLFADDGWQAFEELPKLRTSVIEEKPKSIITRNDSPDISFDQSINPYQGCEHGCAYCYARPTHAYWGLSPGLDFETKLFAKTNAAELLRRELSDPRYVPKMIALGANTDPYQPVERQYRITRQILEVLAEFNHPVGIVTKSALVLRDLDILQPMAARNLVRVAISVTSLDAKLSRSMEPRASTPRKRLEALEVLSAAGVSTTVMVAPVIPSVNDHEIEAILAAAAAAG 269          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: A0A4R3MEK5_9HYPH (DNA repair photolyase n=1 Tax=Tepidamorphus gemmatus TaxID=747076 RepID=A0A4R3MEK5_9HYPH)

HSP 1 Score: 371 bits (953), Expect = 1.280e-125
Identity = 186/265 (70.19%), Postives = 217/265 (81.89%), Query Frame = 1
Query:   43 PAVTGAGRLTAL-PQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            P    A   TA+ P + RGRGA +N  GRYE+     FDDGW SL +LPP +TT+ +E+PK II RNQSPDISFDRSINPYRGCEHGC YC+ARPTHAYMGLSPGLDFES+LF KPNAA LL  EL  P YRPRTIA+G+NTDPYQP+ER +RITRQ+LEVL+  NHPVGIVTKSAL++RD+DIL+ MAERGLVKVA+SVTTLD +LARAMEPRA+TP++RLE +  L+ AGIPT VM+ PVIP +ND EIEAIL AAA AG +E
Sbjct:   15 PCPDPAALATAVAPDRRRGRGAISNVSGRYERLTRQIFDDGWTSLDELPPFRTTVTQERPKRIITRNQSPDISFDRSINPYRGCEHGCSYCFARPTHAYMGLSPGLDFESRLFAKPNAAELLERELADPGYRPRTIAMGTNTDPYQPVERQWRITRQVLEVLARHNHPVGIVTKSALIVRDIDILSHMAERGLVKVALSVTTLDRRLARAMEPRAATPSRRLETIMRLAEAGIPTAVMVAPVIPGLNDQEIEAILAAAAAAGARE 279          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: A0A7S8C2E0_9HYPH (PA0069 family radical SAM protein n=2 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C2E0_9HYPH)

HSP 1 Score: 369 bits (948), Expect = 7.320e-125
Identity = 193/278 (69.42%), Postives = 219/278 (78.78%), Query Frame = 1
Query:    1 MPTLIDNRPSISFDPAVTGAGRLTALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            M TLID+RPS         A ++   P   RGRGAR+N  GRYE+     FDDGW +L +   L T++ EE+PKTII RN SPDI FDRSINPYRGCEHGC YCYARP+HAYMGLSPGLDFES+LF KPNA  LLR EL+ P Y PRTIALG+NTDPYQPIER YRITR ILEVL+E +HPVGIVTKSALV RD+DIL  MAE+GL KVA+SVTTLD  L+RAMEPRASTPA+RL AL +L+ AGIPT VM+ PVIPA+ND EIEAILKAA+ AGV E
Sbjct:   11 MTTLIDHRPS---------APQVPPPPGHERGRGARSNASGRYEREARLIFDDGWGTLEEETRLSTSVTEERPKTIITRNSSPDIGFDRSINPYRGCEHGCSYCYARPSHAYMGLSPGLDFESRLFAKPNAPELLRRELSDPKYTPRTIALGTNTDPYQPIERQYRITRGILEVLAELDHPVGIVTKSALVTRDIDILGPMAEKGLAKVALSVTTLDPSLSRAMEPRASTPARRLRALEMLNNAGIPTAVMVAPVIPALNDREIEAILKAASAAGVGE 279          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: A0A848Y386_9HYPH (PA0069 family radical SAM protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A848Y386_9HYPH)

HSP 1 Score: 366 bits (939), Expect = 1.540e-123
Identity = 187/261 (71.65%), Postives = 211/261 (80.84%), Query Frame = 1
Query:   55 GAGRL-TALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            GAG   TA  +  RGRGAR N  GR+E N    FDDGW++L D P LKT +FEEQPK +I RN SPD+ FD SINPYRGCEHGC YCYARP HAY+GLSPGLDFESKLF KPNAA +LR EL AP Y+P  I LG NTD YQPIER YRITRQILE+L EF +PVGIVTKSALVLRDLDIL +MAE+ LV VAISVT+LDG LAR MEPRA+TP KR++AL VL+A+GIPT VM+ PV+PA+ND EIEAILKAA+ AGVKE
Sbjct:   16 GAGEAPTATRKMARGRGARTNVSGRFESNKRLLFDDGWQTLDDQPALKTEVFEEQPKGMINRNSSPDLGFDLSINPYRGCEHGCSYCYARPAHAYVGLSPGLDFESKLFAKPNAAEVLRRELLAPGYKPSLIVLGGNTDAYQPIERRYRITRQILELLLEFKNPVGIVTKSALVLRDLDILQAMAEKDLVNVAISVTSLDGALARKMEPRAATPMKRMQALEVLTASGIPTTVMVAPVVPAINDSEIEAILKAASAAGVKE 276          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: UPI0009EA8DAD (PA0069 family radical SAM protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=UPI0009EA8DAD)

HSP 1 Score: 367 bits (941), Expect = 1.700e-123
Identity = 184/262 (70.23%), Postives = 212/262 (80.92%), Query Frame = 1
Query:   49 VTGAGRLTALPQQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            +TG   +    ++ RGRGA +N  GRYE +    FDDGW SL +LPP KTT+  +  + II RNQSPDI FDRSINPYRGCEHGCVYC+ARPTHAY+GLSPGLDFESKLF+KP+AAALL +EL APNY PRTIA+G+NTDPYQPIER Y++ R+ILE L +  HPVGIVTKSALV RDLDIL  MAER L KVA+SVTTLD +LAR MEPRASTP +RLEALR LS AG+PT VM+ PVIPA+NDMEIE IL AAA AGV+E
Sbjct:   39 LTGLLGVVVEHERRRGRGAHSNASGRYETHARIAFDDGWRSLEELPPFKTTVQVDSTRKIITRNQSPDIGFDRSINPYRGCEHGCVYCFARPTHAYLGLSPGLDFESKLFVKPDAAALLEKELAAPNYSPRTIAIGTNTDPYQPIERRYKVMRRILETLDKAGHPVGIVTKSALVTRDLDILARMAERNLAKVALSVTTLDPELARTMEPRASTPMRRLEALRQLSQAGVPTTVMVAPVIPALNDMEIERILDAAAAAGVRE 300          
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Match: F8BU82_AFIC5 (Radical SAM domain protein n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=F8BU82_AFIC5)

HSP 1 Score: 364 bits (934), Expect = 1.450e-122
Identity = 184/251 (73.31%), Postives = 209/251 (83.27%), Query Frame = 1
Query:   82 QQMRGRGARNNDKGRYEKNGISFFDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHGCVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIALGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTSMAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVVMIGPVIPAVNDMEIEAILKAAAVAGVKE 834
            ++ RGRGA+ N  GRYE+   + FDDGW+SL DLPP KTTI  +  + +I+RN SPDI FDRSINPYRGCEHGCVYC+ARPTHAY+GLSPGLDFESKLF+KP+A  LL +ELTAP Y PRTIA+G+NTDPYQPIER +RI R ILEVL +  HPVGIVTKSALV RD+DIL  MAE+ L KVAISVT+LD KLARAMEPRASTP KRLEALR LSAAGIPTVVM  P+IPA+ND EIE IL AAA AGV+E
Sbjct:   41 ERRRGRGAQTNASGRYEREARAAFDDGWQSLDDLPPFKTTIALDTARKVISRNDSPDIGFDRSINPYRGCEHGCVYCFARPTHAYLGLSPGLDFESKLFVKPDAPMLLEKELTAPGYEPRTIAIGTNTDPYQPIEREHRIMRGILEVLEKAGHPVGIVTKSALVTRDIDILARMAEKSLAKVAISVTSLDPKLARAMEPRASTPPKRLEALRQLSAAGIPTVVMTAPIIPALNDSEIERILDAAAHAGVRE 291          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11923.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FF05FC81.810e-13975.90PA0069 family radical SAM protein n=1 Tax=Aestuari... [more]
A0A6G6WVW2_9HYPH8.800e-13873.02PA0069 family radical SAM protein n=2 Tax=Hyphomic... [more]
A0A2W2APT8_9HYPH4.500e-13371.22Radical SAM protein n=2 Tax=Aestuariivirga litoral... [more]
A0A7Y2BNQ7_9HYPH1.510e-12870.14PA0069 family radical SAM protein n=1 Tax=Hyphomic... [more]
UPI0010CA1CB11.760e-12674.21PA0069 family radical SAM protein n=1 Tax=Rhodolig... [more]
A0A4R3MEK5_9HYPH1.280e-12570.19DNA repair photolyase n=1 Tax=Tepidamorphus gemmat... [more]
A0A7S8C2E0_9HYPH7.320e-12569.42PA0069 family radical SAM protein n=2 Tax=Kaustia ... [more]
A0A848Y386_9HYPH1.540e-12371.65PA0069 family radical SAM protein n=1 Tax=Hyphomic... [more]
UPI0009EA8DAD1.700e-12370.23PA0069 family radical SAM protein n=1 Tax=Pseudola... [more]
F8BU82_AFIC51.450e-12273.31Radical SAM domain protein n=1 Tax=Afipia carboxid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11923contigP-wetherbeei_contig11923:1235..2068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog504832.OCAR_6974
Preferred nameMA20_42330
PFAMsRadical_SAM
Model size834
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.6e-123
EggNOG OGsCOG1533@1|root,COG1533@2|Bacteria,1MW0H@1224|Proteobacteria,2TQQB@28211|Alphaproteobacteria,3JSMU@41294|Bradyrhizobiaceae
DescriptionElongator protein 3, MiaB family, Radical SAM
Cds size834
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.64851-CDS-P-wetherbeei_contig11923:1234..20681683185931.64851-CDS-P-wetherbeei_contig11923:1234..2068Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11923 1235..2068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11923.3.1prot_P-wetherbeei_contig11923.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11923 1235..2068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11923.3.1

>prot_P-wetherbeei_contig11923.3.1 ID=prot_P-wetherbeei_contig11923.3.1|Name=mRNA_P-wetherbeei_contig11923.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=278bp
MPTLIDNRPSISFDPAVTGAGRLTALPQQMRGRGARNNDKGRYEKNGISF
FDDGWESLADLPPLKTTIFEEQPKTIIARNQSPDISFDRSINPYRGCEHG
CVYCYARPTHAYMGLSPGLDFESKLFIKPNAAALLREELTAPNYRPRTIA
LGSNTDPYQPIERTYRITRQILEVLSEFNHPVGIVTKSALVLRDLDILTS
MAERGLVKVAISVTTLDGKLARAMEPRASTPAKRLEALRVLSAAGIPTVV
MIGPVIPAVNDMEIEAILKAAAVAGVKE
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mRNA from alignment at P-wetherbeei_contig11923:1235..2068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11923.3.1 ID=mRNA_P-wetherbeei_contig11923.3.1|Name=mRNA_P-wetherbeei_contig11923.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig11923:1235..2068+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTACTTTGATTGATAACAGGCCCTCCATTTCCTTCGATCCCGCCGT CACGGGTGCGGGGCGGCTCACGGCCTTGCCGCAGCAGATGCGGGGGCGCG GGGCGCGCAATAATGACAAGGGGCGCTACGAGAAGAACGGGATTTCCTTC TTTGATGATGGTTGGGAATCGCTGGCGGATCTTCCGCCGCTCAAGACCAC AATTTTCGAGGAACAGCCCAAGACCATTATCGCGCGTAACCAGTCGCCTG ATATTTCCTTTGACCGTTCGATCAATCCCTACCGGGGCTGCGAGCACGGC TGCGTTTATTGTTATGCGCGGCCCACCCACGCCTATATGGGGCTTTCGCC GGGGCTGGATTTCGAGAGCAAGCTATTCATAAAGCCGAACGCGGCGGCGC TTCTCCGGGAGGAATTAACCGCGCCCAATTATCGCCCACGCACCATTGCG CTGGGCTCAAACACGGATCCCTACCAGCCGATCGAGCGGACTTACCGGAT TACGCGGCAAATCCTGGAAGTGCTGTCGGAATTCAATCATCCCGTTGGCA TTGTCACCAAGTCGGCGCTGGTCTTGCGCGACCTCGATATCCTGACCTCC ATGGCGGAGCGCGGGCTGGTGAAGGTTGCAATTTCGGTCACGACGCTTGA TGGAAAGTTGGCGCGCGCGATGGAGCCTCGGGCCTCGACCCCTGCCAAAC GGCTCGAGGCTCTGCGTGTGCTGTCGGCGGCGGGCATTCCCACCGTGGTG ATGATCGGGCCGGTTATTCCGGCGGTGAACGACATGGAGATCGAGGCCAT CCTCAAGGCCGCCGCCGTGGCCGGGGTGAAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11923:1235..2068+

>mRNA_P-wetherbeei_contig11923.3.1 ID=mRNA_P-wetherbeei_contig11923.3.1|Name=mRNA_P-wetherbeei_contig11923.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig11923:1235..2068+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTACTTTGATTGATAACAGGCCCTCCATTTCCTTCGATCCCGCCGT
CACGGGTGCGGGGCGGCTCACGGCCTTGCCGCAGCAGATGCGGGGGCGCG
GGGCGCGCAATAATGACAAGGGGCGCTACGAGAAGAACGGGATTTCCTTC
TTTGATGATGGTTGGGAATCGCTGGCGGATCTTCCGCCGCTCAAGACCAC
AATTTTCGAGGAACAGCCCAAGACCATTATCGCGCGTAACCAGTCGCCTG
ATATTTCCTTTGACCGTTCGATCAATCCCTACCGGGGCTGCGAGCACGGC
TGCGTTTATTGTTATGCGCGGCCCACCCACGCCTATATGGGGCTTTCGCC
GGGGCTGGATTTCGAGAGCAAGCTATTCATAAAGCCGAACGCGGCGGCGC
TTCTCCGGGAGGAATTAACCGCGCCCAATTATCGCCCACGCACCATTGCG
CTGGGCTCAAACACGGATCCCTACCAGCCGATCGAGCGGACTTACCGGAT
TACGCGGCAAATCCTGGAAGTGCTGTCGGAATTCAATCATCCCGTTGGCA
TTGTCACCAAGTCGGCGCTGGTCTTGCGCGACCTCGATATCCTGACCTCC
ATGGCGGAGCGCGGGCTGGTGAAGGTTGCAATTTCGGTCACGACGCTTGA
TGGAAAGTTGGCGCGCGCGATGGAGCCTCGGGCCTCGACCCCTGCCAAAC
GGCTCGAGGCTCTGCGTGTGCTGTCGGCGGCGGGCATTCCCACCGTGGTG
ATGATCGGGCCGGTTATTCCGGCGGTGAACGACATGGAGATCGAGGCCAT
CCTCAAGGCCGCCGCCGTGGCCGGGGTGAAAGAG
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