mRNA_P-wetherbeei_contig10144.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10144.1.1
Unique NamemRNA_P-wetherbeei_contig10144.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10144.1.1 vs. uniprot
Match: D7FRX1_ECTSI (SCAR-WAVE n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX1_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.370e-36
Identity = 89/189 (47.09%), Postives = 119/189 (62.96%), Query Frame = 2 
Query:  404 MPLVKRPIPSSLSLAAPELYSE------SRGNEVLDDVNMAGMVGTLTQLGALAVYAHEMFSERCSVADELAGRVVEISSHTSKLMADLTRAEEVTARVVGKEMGIDDNAVVEAMKAERQAATRTEAATAQTVFLARTMPPGLVERYHSSEVRPMPALAEIDALISNKERQRMRQERGVESCTQLYSAP 952
            MPL  RPIP +L+L  PE+Y +      + G +VL+DVNMA MVGTL QLG LA YA +MF      AD+L+ ++   S+  S L+  L  AE+ TA  +G   GIDDNA VEA+KAERQ A + E+  A  VF    MP  LVERYHS EV  +P L  IDA++S++E+  + ++ G++SC   YS P
Sbjct:    1 MPLTMRPIPHALNLGDPEIYGQGPSGQGTPGTQVLEDVNMASMVGTLAQLGVLATYAQDMFDGLFQTADDLSKKISAASTRCSNLLQALPEAEKRTAEAIGSGTGIDDNAAVEAIKAERQHAKQAESEAASKVFHPEAMPRWLVERYHSPEVARVPDLHLIDAVLSHEEKSLLTKD-GLDSCALRYSNP 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10144.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRX1_ECTSI1.370e-3647.09SCAR-WAVE n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10144contigP-wetherbeei_contig10144:663..2031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FRX1
PFAMsPBD,WH1,WH2
Model size1369
Max annot lvl2759|Eukaryota
KEGG koko:K05747,ko:K17277
KEGG Pathwayko04062,ko04144,ko04520,ko04530,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,ko05231,map04062,map04144,map04520,map04530,map04666,map04810,map05100,map05130,map05131,map05132,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000768,GO:0001578,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0006928,GO:0006949,GO:0006996,GO:0007010,GO:0007017,GO:0007520,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010638,GO:0012505,GO:0014902,GO:0016043,GO:0016477,GO:0017016,GO:0017048,GO:0019899,GO:0030027,GO:0030154,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031267,GO:0031334,GO:0031410,GO:0031982,GO:0032271,GO:0032273,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0040011,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044089,GO:0044424,GO:0044444,GO:0044464,GO:0048365,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051020,GO:0051125,GO:0051127,GO:0051128,GO:0051130,GO:0051146,GO:0051179,GO:0051493,GO:0051495,GO:0051674,GO:0055037,GO:0061061,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097708,GO:0110053,GO:0120025,GO:1902903,GO:1902905
Exons1
Evalue1.85e-38
EggNOG OGsKOG3671@1|root,KOG3671@2759|Eukaryota
Descriptionpositive regulation of Arp2/3 complex-mediated actin nucleation
Cds size966
COG categoryT
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.55986-CDS-P-wetherbeei_contig10144:662..16281683185856.55986-CDS-P-wetherbeei_contig10144:662..1628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10144 663..1628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185856.5682003-UTR-P-wetherbeei_contig10144:1628..20311683185856.5682003-UTR-P-wetherbeei_contig10144:1628..2031Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10144 1629..2031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10144.1.1prot_P-wetherbeei_contig10144.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10144 663..1628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10144.1.1

>prot_P-wetherbeei_contig10144.1.1 ID=prot_P-wetherbeei_contig10144.1.1|Name=mRNA_P-wetherbeei_contig10144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
MPLVKRPIPSSLSLAAPELYSESRGNEVLDDVNMAGMVGTLTQLGALAVY
AHEMFSERCSVADELAGRVVEISSHTSKLMADLTRAEEVTARVVGKEMGI
DDNAVVEAMKAERQAATRTEAATAQTVFLARTMPPGLVERYHSSEVRPMP
ALAEIDALISNKERQRMRQERGVESCTQLYSAPTSSTTSGSGWNGSARTK
SPTRSSSGRRSAAPARRRRRLLPAPPISAPRRLRRPASPPSAVARPRAQS
PARRRPPSASWTSGAARAAGFRNAVAERRRWRQRPQPDGAGIAGHAGGGP
GGHLRGALLPARGRLCGTVVRH
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mRNA from alignment at P-wetherbeei_contig10144:663..2031-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10144.1.1 ID=mRNA_P-wetherbeei_contig10144.1.1|Name=mRNA_P-wetherbeei_contig10144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1369bp|location=Sequence derived from alignment at P-wetherbeei_contig10144:663..2031- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGCACATCTCCAACCCGCCAATGGCTTGCCCCTTTGCTTTTTTGCAA
CAATGGTGCCGCCGAAGCGAGGTGCGGCAGACTCGACATCAATGCTTCTG
TAGCCACAACTCTCTCCGTCCCTTCTCCCCATCGCGCTCCGCCGTTACCG
CCGCCAATTACAATAACGGCAGCCCGGTGTGCTCAAATGAACCGCCACCG
CGAACGCATGAGGCCGTGAACGGCGAGGGCGGCGGCGGCGCTGCTGGCGA
CGAAGGCGGCGATCGCCGACCAGAGAGGCACCCGTGCCGACCTGCGCAAA
GGGAGCGAGCCAGAGGACGAGGAGCGGCGGGAAGGCGAAAGAATCTTTGT
CGGGATGAACCGGTTTGGGGGCGTCAAGGAGGCGGCGGCAAGACAAGCAA
GCCATGCCGCTCGTAAAACGGCCTATCCCGTCCTCTTTGAGCTTGGCAGC
GCCCGAGCTGTACTCTGAGAGCCGCGGCAACGAGGTCCTCGACGATGTCA
ACATGGCGGGTATGGTCGGCACGCTCACGCAGCTTGGCGCGCTGGCCGTG
TACGCCCACGAGATGTTTTCAGAGCGGTGCAGCGTCGCCGACGAGCTGGC
CGGGCGAGTCGTGGAGATTAGCTCGCACACGTCGAAGCTGATGGCGGACC
TCACGCGCGCCGAGGAGGTGACGGCGCGCGTCGTCGGCAAGGAGATGGGT
ATCGACGACAACGCCGTCGTCGAAGCCATGAAGGCGGAGCGCCAGGCTGC
GACCCGCACCGAAGCCGCGACGGCGCAGACCGTCTTCCTGGCGCGGACCA
TGCCGCCAGGTCTCGTGGAGCGCTACCACAGCTCCGAGGTGCGCCCGATG
CCGGCTCTGGCGGAGATCGACGCGCTCATCTCCAACAAGGAGCGCCAACG
GATGCGGCAGGAGCGCGGCGTCGAGAGCTGCACGCAGCTCTATAGCGCCC
CAACCTCTTCTACCACGAGTGGGAGCGGCTGGAACGGGAGCGCCAGGACA
AAATCTCCCACGAGAAGCAGCAGCGGAAGGAGGAGCGCCGCGCCCGCAAG
AAGAAGAAGGAGGCTGCTGCCGGCTCCGCCGATCTCAGCGCCGAGGCGTT
TGCGGCGGCCGGCATCGCCGCCCTCGGCGGTGGCGCGACCCCGGGCGCAG
TCGCCGGCTCGTCGAAGGCCGCCAAGCGCCAGCTGGACTTCCGGAGCCGC
GCGGGCGGCGGGCTTTCGCAACGCGGTCGCTGAGCGGCGGCGGTGGCGGC
AGCGGCCACAACCTGATGGGGCTGGTATCGCAGGACACGCTGGTGGTGGA
CCAGGGGGACACCTTCGCGGAGCACTACTACCAGCGCGAGGAAGACTTTG
CGGGACCGTCGTACGACAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10144:663..2031-

>mRNA_P-wetherbeei_contig10144.1.1 ID=mRNA_P-wetherbeei_contig10144.1.1|Name=mRNA_P-wetherbeei_contig10144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig10144:663..2031- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTCGTAAAACGGCCTATCCCGTCCTCTTTGAGCTTGGCAGCGCC
CGAGCTGTACTCTGAGAGCCGCGGCAACGAGGTCCTCGACGATGTCAACA
TGGCGGGTATGGTCGGCACGCTCACGCAGCTTGGCGCGCTGGCCGTGTAC
GCCCACGAGATGTTTTCAGAGCGGTGCAGCGTCGCCGACGAGCTGGCCGG
GCGAGTCGTGGAGATTAGCTCGCACACGTCGAAGCTGATGGCGGACCTCA
CGCGCGCCGAGGAGGTGACGGCGCGCGTCGTCGGCAAGGAGATGGGTATC
GACGACAACGCCGTCGTCGAAGCCATGAAGGCGGAGCGCCAGGCTGCGAC
CCGCACCGAAGCCGCGACGGCGCAGACCGTCTTCCTGGCGCGGACCATGC
CGCCAGGTCTCGTGGAGCGCTACCACAGCTCCGAGGTGCGCCCGATGCCG
GCTCTGGCGGAGATCGACGCGCTCATCTCCAACAAGGAGCGCCAACGGAT
GCGGCAGGAGCGCGGCGTCGAGAGCTGCACGCAGCTCTATAGCGCCCCAA
CCTCTTCTACCACGAGTGGGAGCGGCTGGAACGGGAGCGCCAGGACAAAA
TCTCCCACGAGAAGCAGCAGCGGAAGGAGGAGCGCCGCGCCCGCAAGAAG
AAGAAGGAGGCTGCTGCCGGCTCCGCCGATCTCAGCGCCGAGGCGTTTGC
GGCGGCCGGCATCGCCGCCCTCGGCGGTGGCGCGACCCCGGGCGCAGTCG
CCGGCTCGTCGAAGGCCGCCAAGCGCCAGCTGGACTTCCGGAGCCGCGCG
GGCGGCGGGCTTTCGCAACGCGGTCGCTGAGCGGCGGCGGTGGCGGCAGC
GGCCACAACCTGATGGGGCTGGTATCGCAGGACACGCTGGTGGTGGACCA
GGGGGACACCTTCGCGGAGCACTACTACCAGCGCGAGGAAGACTTTGCGG
GACCGTCGTACGACAT
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