mRNA_P-wetherbeei_contig11917.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11917.1.1
Unique NamemRNA_P-wetherbeei_contig11917.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11917contigP-wetherbeei_contig11917:471..1774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size976
Hectar predicted targeting categoryother localisation
Exons3
Cds size972
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.286385-CDS-P-wetherbeei_contig11917:470..10521683185931.286385-CDS-P-wetherbeei_contig11917:470..1052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11917 471..1052 +
1683185931.2947204-CDS-P-wetherbeei_contig11917:1172..12281683185931.2947204-CDS-P-wetherbeei_contig11917:1172..1228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11917 1173..1228 +
1683185931.3027694-CDS-P-wetherbeei_contig11917:1438..17721683185931.3027694-CDS-P-wetherbeei_contig11917:1438..1772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11917 1439..1772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11917.1.1prot_P-wetherbeei_contig11917.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11917 471..1772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11917.1.1

>prot_P-wetherbeei_contig11917.1.1 ID=prot_P-wetherbeei_contig11917.1.1|Name=mRNA_P-wetherbeei_contig11917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
PACVKDKAAAAAAATADTIASAATIAGPVAAGTAAATSAVARAALAVSAA
VMPAAATTVTTAAPVAPAVPTEAASSATSAAATIAAVPAAIVVPDIAIAA
PNAKAASRSAAAATTAAATVAVAAVAIVTPAAATMIAVAPDSISDKAESK
VSETTVPAPATAAAAVATAAAAMAAAPVKERKLSDHEVDEMVAKVRQRST
SGGKGRNTAATESDILSKKKEEAPQQDPQPPPEPKRISNKREQQQRQQSP
PPTAGTATTTTDASLTPPPPPRAPAGPAVAATATATTIIVTTTALCPTTP
MAVVAVSAVAEAAAAPTSPPMTAP
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mRNA from alignment at P-wetherbeei_contig11917:471..1774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11917.1.1 ID=mRNA_P-wetherbeei_contig11917.1.1|Name=mRNA_P-wetherbeei_contig11917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1304bp|location=Sequence derived from alignment at P-wetherbeei_contig11917:471..1774+ (Phaeothamnion wetherbeei SAG_119_79)
CCAGCGTGCGTCAAGGACAAGGCGGCGGCCGCCGCCGCCGCCACTGCCGA
CACCATCGCCAGCGCCGCCACTATCGCCGGCCCCGTTGCCGCTGGCACCG
CTGCCGCCACCAGCGCGGTCGCGCGCGCCGCCCTGGCGGTTTCCGCTGCT
GTCATGCCCGCTGCCGCAACCACTGTCACCACAGCTGCGCCAGTTGCGCC
GGCGGTCCCGACAGAGGCCGCCTCTTCGGCGACTTCCGCCGCAGCCACTA
TCGCCGCCGTCCCTGCGGCCATCGTCGTCCCGGACATTGCGATTGCCGCC
CCTAATGCGAAGGCGGCTTCGCGGTCCGCAGCTGCCGCCACCACGGCGGC
CGCCACTGTCGCCGTGGCGGCAGTTGCCATCGTTACGCCGGCCGCCGCGA
CCATGATTGCGGTGGCACCAGACAGCATTAGCGACAAGGCGGAGAGCAAG
GTCAGCGAGACCACCGTGCCGGCGCCGGCGACGGCGGCTGCGGCCGTGGC
GACGGCGGCTGCGGCCATGGCGGCGGCGCCAGTGAAGGAGCGCAAGCTGA
GCGACCATGAGGTGGACGAGATGGTGGCCAAAGTGAGACCATTGGCCGGT
GCTCGAGGCTGTGCTTTGATTGAACCTGGGCGTCTCTCTTCTGTCTCGTT
GAAGTTTGAGTCACCGCTCGCGTTGTTTCTTTTCCGTCGCTGCCGCACGC
AGGTCCGCCAGCGCAGTACGTCGGGCGGCAAGGGCAGGAACACAGCCGCC
ACGGAAAGGTATATTCCCACTACCATCTCTAACCTCCTTGGCTTCGTTCT
TTTGTCTGCGCATGCACTGTTATTGCTGTCAAATGCCGCTGCCGAAGCCG
AAGACTGCACCGCAGCAGCAGCAGTTTTCGCTTGGCAACATTAACCTCTC
AACAACATGCAAAAAACAAAACAATAAAACAACAAATATTTCTCGGCCAA
TATTCCGAAATATGACAGCGACATTCTGAGCAAGAAGAAAGAGGAGGCGC
CGCAGCAGGATCCGCAACCGCCCCCGGAGCCCAAGCGGATCTCCAACAAG
CGTGAGCAGCAGCAACGACAGCAGTCGCCGCCGCCGACCGCCGGTACTGC
CACAACGACTACGGACGCGTCCCTCACGCCACCGCCGCCCCCGAGGGCCC
CGGCCGGCCCCGCCGTCGCGGCCACCGCTACCGCCACCACCATCATCGTT
ACGACCACGGCGTTGTGCCCCACCACCCCAATGGCGGTGGTAGCTGTGTC
GGCGGTGGCAGAGGCCGCGGCGGCCCCCACGTCGCCCCCGATGACGGCCC
CGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11917:471..1774+

>mRNA_P-wetherbeei_contig11917.1.1 ID=mRNA_P-wetherbeei_contig11917.1.1|Name=mRNA_P-wetherbeei_contig11917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig11917:471..1774+ (Phaeothamnion wetherbeei SAG_119_79)
CCAGCGTGCGTCAAGGACAAGGCGGCGGCCGCCGCCGCCGCCACTGCCGA
CACCATCGCCAGCGCCGCCACTATCGCCGGCCCCGTTGCCGCTGGCACCG
CTGCCGCCACCAGCGCGGTCGCGCGCGCCGCCCTGGCGGTTTCCGCTGCT
GTCATGCCCGCTGCCGCAACCACTGTCACCACAGCTGCGCCAGTTGCGCC
GGCGGTCCCGACAGAGGCCGCCTCTTCGGCGACTTCCGCCGCAGCCACTA
TCGCCGCCGTCCCTGCGGCCATCGTCGTCCCGGACATTGCGATTGCCGCC
CCTAATGCGAAGGCGGCTTCGCGGTCCGCAGCTGCCGCCACCACGGCGGC
CGCCACTGTCGCCGTGGCGGCAGTTGCCATCGTTACGCCGGCCGCCGCGA
CCATGATTGCGGTGGCACCAGACAGCATTAGCGACAAGGCGGAGAGCAAG
GTCAGCGAGACCACCGTGCCGGCGCCGGCGACGGCGGCTGCGGCCGTGGC
GACGGCGGCTGCGGCCATGGCGGCGGCGCCAGTGAAGGAGCGCAAGCTGA
GCGACCATGAGGTGGACGAGATGGTGGCCAAAGTCCGCCAGCGCAGTACG
TCGGGCGGCAAGGGCAGGAACACAGCCGCCACGGAAAGCGACATTCTGAG
CAAGAAGAAAGAGGAGGCGCCGCAGCAGGATCCGCAACCGCCCCCGGAGC
CCAAGCGGATCTCCAACAAGCGTGAGCAGCAGCAACGACAGCAGTCGCCG
CCGCCGACCGCCGGTACTGCCACAACGACTACGGACGCGTCCCTCACGCC
ACCGCCGCCCCCGAGGGCCCCGGCCGGCCCCGCCGTCGCGGCCACCGCTA
CCGCCACCACCATCATCGTTACGACCACGGCGTTGTGCCCCACCACCCCA
ATGGCGGTGGTAGCTGTGTCGGCGGTGGCAGAGGCCGCGGCGGCCCCCAC
GTCGCCCCCGATGACGGCCCCG
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