mRNA_P-wetherbeei_contig11911.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11911.1.1
Unique NamemRNA_P-wetherbeei_contig11911.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11911contigP-wetherbeei_contig11911:78..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008613268.1
Preferred nameEXD1
PFAMsDNA_pol_A_exo1,PAP_assoc
Model size240
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335,ko:K13291,ko:K17680,ko:K18740
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016458,GO:0019222,GO:0031047,GO:0032991,GO:0034587,GO:0034641,GO:0034660,GO:0035770,GO:0036464,GO:0042802,GO:0042803,GO:0043170,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0046483,GO:0046983,GO:0048519,GO:0050789,GO:0060255,GO:0060293,GO:0065007,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904,GO:1990923
Exons1
Evalue2.8e-05
EggNOG OGsCOG5260@1|root,KOG2405@1|root,KOG2277@2759|Eukaryota,KOG2405@2759|Eukaryota
EC2.7.7.52,2.7.7.7,3.6.4.12
DescriptionpiRNA metabolic process
Cds size240
COG categoryS
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.1760519-CDS-P-wetherbeei_contig11911:77..3171683185931.1760519-CDS-P-wetherbeei_contig11911:77..317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11911 78..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11911.1.1prot_P-wetherbeei_contig11911.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11911 78..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11911.1.1

>prot_P-wetherbeei_contig11911.1.1 ID=prot_P-wetherbeei_contig11911.1.1|Name=mRNA_P-wetherbeei_contig11911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MIDGASATPAQVAHVEKVRERLENIFRRSWKDASLLVFGSSGSGLATPSS
DIDFSLILPAERARAKEADEKLRAANAVL*
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mRNA from alignment at P-wetherbeei_contig11911:78..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11911.1.1 ID=mRNA_P-wetherbeei_contig11911.1.1|Name=mRNA_P-wetherbeei_contig11911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig11911:78..317- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACGGCGCGAGCGCGACGCCGGCGCAGGTCGCCCACGTCGAAAA
GGTGCGGGAGCGTCTGGAAAACATCTTCCGGCGGTCGTGGAAGGATGCAT
CGCTGCTCGTGTTCGGGTCATCGGGGTCGGGGCTGGCGACGCCATCATCC
GACATCGACTTTTCGCTGATCCTGCCGGCGGAAAGGGCGCGGGCAAAGGA
GGCGGACGAGAAGCTGCGGGCGGCCAACGCGGTCCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11911:78..317-

>mRNA_P-wetherbeei_contig11911.1.1 ID=mRNA_P-wetherbeei_contig11911.1.1|Name=mRNA_P-wetherbeei_contig11911.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig11911:78..317- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACGGCGCGAGCGCGACGCCGGCGCAGGTCGCCCACGTCGAAAA
GGTGCGGGAGCGTCTGGAAAACATCTTCCGGCGGTCGTGGAAGGATGCAT
CGCTGCTCGTGTTCGGGTCATCGGGGTCGGGGCTGGCGACGCCATCATCC
GACATCGACTTTTCGCTGATCCTGCCGGCGGAAAGGGCGCGGGCAAAGGA
GGCGGACGAGAAGCTGCGGGCGGCCAACGCGGTCCTGTGA
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