mRNA_P-wetherbeei_contig11909.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11909.1.1
Unique NamemRNA_P-wetherbeei_contig11909.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11909.1.1 vs. uniprot
Match: UPI001E5B4416 (DUF4114 domain-containing protein n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E5B4416)

HSP 1 Score: 329 bits (844), Expect = 3.870e-102
Identity = 179/333 (53.75%), Postives = 231/333 (69.37%), Query Frame = 1 
Query:   13 LDFKTTDQSMWSSGQALTINEDLTLFSQSVGPFNFSAFDGDLSISAGANAALVFKLQGTAGGLALDYPIKADVILPNVVAAGQEFTVETVGNGLDTSDPHFKATFPEFSTSLQALFSANFSVNFSSDWFGSDSYSYSTNQTFTLFSLASGHHFHLADGFDFTIPTDYKTHTT--QVGTGLLPTVTLNATTPDIATVDIDLIKLITDVADDVGIEIPPLSGSILGGSITFDLVSADLKAGLAITQQFQFVPTAVNVVLTAPWGSTTTIPLGESANFTVPNSWTQPITLAASYQLEGNLINQTGFIGKADLDVSVLSGNVSFL--GSFGPFYQND 999
            ++FKTTDQSMWS+GQA TINE  TLF +     +FS FD DL++SA A+ +LVF ++  AG ++L YP+     +PNVVAAGQ+FTV+++ NGLD S  HF A FPEF   L  +F+A+FS+NF SD FGSDS  Y  + T  L SL SG    + DGFD  +P  Y    T  Q G+G L  VTL+ TTPDIATVD+D++ +I D+   VG E P LSGS L G I+++L++A+L AGLAITQQFQF+PT ++V LTAPWG + TIP+G+SA F VP  W +  TL ASY L+GNL+NQTGFIG A L+++ L GNV     G FGP Y +D
Sbjct:   16 VEFKTTDQSMWSTGQAFTINESWTLFEEGFSD-SFSEFDDDLTVSASASVSLVFSVEADAGSISLKYPVDVSFQMPNVVAAGQQFTVQSINNGLDGSATHFDAKFPEFKVDLNVIFTADFSLNFDSDLFGSDSVGYDYDNTIKLISLHSGDRKTIVDGFDVFLPKAYDPSLTTEQSGSGPLAGVTLDVTTPDIATVDVDVLAVIEDI---VGPEFPSLSGSFLDGDISYNLLTAELDAGLAITQQFQFLPTEIDVTLTAPWGESVTIPVGQSATFNVPYYWDKETTLTASYSLQGNLVNQTGFIGTATLNLTALGGNVDLFDYGPFGPLYTDD 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E5B44163.870e-10253.75DUF4114 domain-containing protein n=1 Tax=Reyranel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11909contigP-wetherbeei_contig11909:569..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog555779.Dthio_PD1561
PFAMsCHU_C,Cna_B,DUF5011,Gram_pos_anchor,MucBP,SLH,SdrD_B
Model size1002
Max annot lvl2|Bacteria
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.14e-05
EggNOG OGsCOG4932@1|root,COG4932@2|Bacteria
Descriptiondomain protein
Cds size1002
COG categoryM
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.0342104-CDS-P-wetherbeei_contig11909:568..15701683185931.0342104-CDS-P-wetherbeei_contig11909:568..1570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11909 569..1570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11909.1.1prot_P-wetherbeei_contig11909.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11909 569..1570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11909.1.1

>prot_P-wetherbeei_contig11909.1.1 ID=prot_P-wetherbeei_contig11909.1.1|Name=mRNA_P-wetherbeei_contig11909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
TSSTLDFKTTDQSMWSSGQALTINEDLTLFSQSVGPFNFSAFDGDLSISA
GANAALVFKLQGTAGGLALDYPIKADVILPNVVAAGQEFTVETVGNGLDT
SDPHFKATFPEFSTSLQALFSANFSVNFSSDWFGSDSYSYSTNQTFTLFS
LASGHHFHLADGFDFTIPTDYKTHTTQVGTGLLPTVTLNATTPDIATVDI
DLIKLITDVADDVGIEIPPLSGSILGGSITFDLVSADLKAGLAITQQFQF
VPTAVNVVLTAPWGSTTTIPLGESANFTVPNSWTQPITLAASYQLEGNLI
NQTGFIGKADLDVSVLSGNVSFLGSFGPFYQNDF
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mRNA from alignment at P-wetherbeei_contig11909:569..1570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11909.1.1 ID=mRNA_P-wetherbeei_contig11909.1.1|Name=mRNA_P-wetherbeei_contig11909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig11909:569..1570- (Phaeothamnion wetherbeei SAG_119_79)
ACATCCTCGACGCTCGATTTCAAGACCACTGACCAGAGCATGTGGAGCAG
CGGCCAGGCCCTCACGATCAATGAGGATCTGACGCTTTTCAGCCAGTCGG
TCGGGCCGTTCAATTTTTCCGCCTTCGACGGCGATCTATCGATCTCGGCC
GGAGCCAATGCGGCTCTTGTCTTCAAGCTACAGGGGACGGCCGGCGGCCT
GGCGCTCGACTATCCGATTAAGGCAGACGTCATCCTGCCGAACGTGGTCG
CGGCTGGACAGGAGTTCACGGTCGAAACCGTTGGTAACGGACTCGACACC
AGCGATCCGCATTTCAAGGCGACGTTTCCGGAATTCTCCACCTCACTCCA
GGCGCTGTTCAGCGCCAACTTCTCAGTGAATTTCAGCTCCGACTGGTTCG
GCTCGGACTCCTACTCCTACTCAACCAACCAGACCTTTACGCTGTTCTCG
CTCGCTTCGGGCCACCATTTTCATCTTGCGGATGGCTTCGATTTCACCAT
CCCGACGGATTATAAAACGCATACGACACAGGTCGGCACCGGGTTGTTGC
CAACGGTGACGCTGAATGCGACGACGCCCGATATAGCGACCGTCGATATC
GATCTGATCAAGCTGATCACCGACGTTGCGGACGATGTCGGCATCGAGAT
TCCGCCTCTGTCCGGTAGTATTCTCGGCGGCAGTATCACCTTCGACTTGG
TATCAGCCGATCTGAAGGCCGGCCTTGCCATCACCCAGCAATTCCAGTTT
GTGCCGACTGCGGTCAACGTGGTGCTCACCGCGCCCTGGGGCTCGACCAC
GACGATTCCGCTCGGGGAGTCGGCGAATTTCACGGTGCCGAACTCGTGGA
CCCAGCCGATCACGTTGGCGGCGAGCTATCAGCTCGAAGGCAATCTGATC
AATCAGACCGGGTTTATCGGCAAGGCGGACCTCGACGTGTCGGTGCTGTC
GGGCAACGTCAGCTTTCTCGGCTCGTTCGGGCCGTTCTACCAGAACGACT
TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11909:569..1570-

>mRNA_P-wetherbeei_contig11909.1.1 ID=mRNA_P-wetherbeei_contig11909.1.1|Name=mRNA_P-wetherbeei_contig11909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig11909:569..1570- (Phaeothamnion wetherbeei SAG_119_79)
ACATCCTCGACGCTCGATTTCAAGACCACTGACCAGAGCATGTGGAGCAG
CGGCCAGGCCCTCACGATCAATGAGGATCTGACGCTTTTCAGCCAGTCGG
TCGGGCCGTTCAATTTTTCCGCCTTCGACGGCGATCTATCGATCTCGGCC
GGAGCCAATGCGGCTCTTGTCTTCAAGCTACAGGGGACGGCCGGCGGCCT
GGCGCTCGACTATCCGATTAAGGCAGACGTCATCCTGCCGAACGTGGTCG
CGGCTGGACAGGAGTTCACGGTCGAAACCGTTGGTAACGGACTCGACACC
AGCGATCCGCATTTCAAGGCGACGTTTCCGGAATTCTCCACCTCACTCCA
GGCGCTGTTCAGCGCCAACTTCTCAGTGAATTTCAGCTCCGACTGGTTCG
GCTCGGACTCCTACTCCTACTCAACCAACCAGACCTTTACGCTGTTCTCG
CTCGCTTCGGGCCACCATTTTCATCTTGCGGATGGCTTCGATTTCACCAT
CCCGACGGATTATAAAACGCATACGACACAGGTCGGCACCGGGTTGTTGC
CAACGGTGACGCTGAATGCGACGACGCCCGATATAGCGACCGTCGATATC
GATCTGATCAAGCTGATCACCGACGTTGCGGACGATGTCGGCATCGAGAT
TCCGCCTCTGTCCGGTAGTATTCTCGGCGGCAGTATCACCTTCGACTTGG
TATCAGCCGATCTGAAGGCCGGCCTTGCCATCACCCAGCAATTCCAGTTT
GTGCCGACTGCGGTCAACGTGGTGCTCACCGCGCCCTGGGGCTCGACCAC
GACGATTCCGCTCGGGGAGTCGGCGAATTTCACGGTGCCGAACTCGTGGA
CCCAGCCGATCACGTTGGCGGCGAGCTATCAGCTCGAAGGCAATCTGATC
AATCAGACCGGGTTTATCGGCAAGGCGGACCTCGACGTGTCGGTGCTGTC
GGGCAACGTCAGCTTTCTCGGCTCGTTCGGGCCGTTCTACCAGAACGACT
TC
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