mRNA_P-wetherbeei_contig11906.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11906.1.1
Unique NamemRNA_P-wetherbeei_contig11906.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11906.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11906contigP-wetherbeei_contig11906:1054..1778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWK2
Model size408
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000182
EggNOG OGs2CNI7@1|root,2QWH7@2759|Eukaryota
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.9789908-CDS-P-wetherbeei_contig11906:1053..12421683185930.9789908-CDS-P-wetherbeei_contig11906:1053..1242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11906 1054..1242 -
1683185930.9872274-CDS-P-wetherbeei_contig11906:1559..17781683185930.9872274-CDS-P-wetherbeei_contig11906:1559..1778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11906 1560..1778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11906.1.1prot_P-wetherbeei_contig11906.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11906 1054..1778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11906.1.1

>prot_P-wetherbeei_contig11906.1.1 ID=prot_P-wetherbeei_contig11906.1.1|Name=mRNA_P-wetherbeei_contig11906.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
QTAGDTRRRDELGRKRLALEGEVRQLEVELAAKRVAAAAVAEEEREVEGA
IAAVRTKFERQLVRLRERERLIEVSKADCEAEMAALAAEREAHEHAKAAA
VEQQQRAQAAVAEAAAELRVAALLKDTLESHWASEA
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mRNA from alignment at P-wetherbeei_contig11906:1054..1778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11906.1.1 ID=mRNA_P-wetherbeei_contig11906.1.1|Name=mRNA_P-wetherbeei_contig11906.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=725bp|location=Sequence derived from alignment at P-wetherbeei_contig11906:1054..1778- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGCAGGCGACACGCGGCGGCGCGACGAGCTTGGCCGCAAGCGGCT
GGCGCTCGAGGGCGAGGTGCGGCAGCTGGAGGTGGAGCTGGCGGCCAAGC
GGGTGGCGGCGGCAGCTGTGGCCGAGGAGGAGCGGGAGGTGGAGGGTGCC
ATCGCCGCCGTGCGGACGAAGTTCGAACGGCAGCTGGTGCGTCTGCGGGA
GCGGGAGCGCCTCATTGAGGTGAGCCGAGAGCGGGAGATATAGCTTAAGA
TGTGGATGGTGTGGCAATCCGTGACAGGTCCTCAGCAGCTCCGTCGCGGA
ATCCCTTCTCTCCTAGATTCCTGCCTTTCCGCTGCGAGAAAAACATTTTG
TTGTCGATTCAAACTTGGGAGGTTTGTGGACGGAGCTTTTTTCCCCGATA
GTCATTGTTCTTCCTGCAGCCATGATGAGGTGAACGCTGTTTTACGATCC
ACCCATATTCTTGAGGATGCTGTGTCCGCTTACATCTGTTCATGTCTTCT
GTTTTCTACCACCATTTTTTCTATGACCGTACGCAGGTGAGCAAGGCAGA
CTGCGAGGCGGAGATGGCGGCGCTGGCTGCCGAGCGTGAGGCGCACGAGC
ATGCCAAGGCCGCTGCCGTTGAGCAGCAGCAGCGCGCCCAGGCTGCGGTC
GCTGAGGCCGCTGCGGAGCTCCGTGTGGCCGCTCTCCTGAAGGACACGCT
CGAATCACACTGGGCCTCCGAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11906:1054..1778-

>mRNA_P-wetherbeei_contig11906.1.1 ID=mRNA_P-wetherbeei_contig11906.1.1|Name=mRNA_P-wetherbeei_contig11906.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig11906:1054..1778- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGCAGGCGACACGCGGCGGCGCGACGAGCTTGGCCGCAAGCGGCT
GGCGCTCGAGGGCGAGGTGCGGCAGCTGGAGGTGGAGCTGGCGGCCAAGC
GGGTGGCGGCGGCAGCTGTGGCCGAGGAGGAGCGGGAGGTGGAGGGTGCC
ATCGCCGCCGTGCGGACGAAGTTCGAACGGCAGCTGGTGCGTCTGCGGGA
GCGGGAGCGCCTCATTGAGGTGAGCAAGGCAGACTGCGAGGCGGAGATGG
CGGCGCTGGCTGCCGAGCGTGAGGCGCACGAGCATGCCAAGGCCGCTGCC
GTTGAGCAGCAGCAGCGCGCCCAGGCTGCGGTCGCTGAGGCCGCTGCGGA
GCTCCGTGTGGCCGCTCTCCTGAAGGACACGCTCGAATCACACTGGGCCT
CCGAGGCG
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