mRNA_P-wetherbeei_contig11900.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11900.1.1
Unique NamemRNA_P-wetherbeei_contig11900.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11900.1.1 vs. uniprot
Match: A0A142XKQ7_9BACT (Uncharacterized protein n=2 Tax=Gemmata TaxID=113 RepID=A0A142XKQ7_9BACT)

HSP 1 Score: 301 bits (772), Expect = 1.830e-94
Identity = 202/453 (44.59%), Postives = 271/453 (59.82%), Query Frame = 1
Query:    1 VAWTEFYMQLTGANTNSGHTSADSPTVTTTNGDWGNAAANRFTAASGTPFSALTTNDYVAVMLDGASVAALIARVTAVNAGGASVDLSTTDRIGTAPATGATGRTAVSGGAWANLGVATSGPL--SAGAAGVPLRINVKAGTYANTTTSRTIGTAGSTTNPIWFRGYNAAPGDLDDDFVTAKPLWSWTTGNLALNGTHTIATNISFFATGTAGSPTVNWAATNGRADRCRFENQTSGGSCSALITGNNGASFAATSCHFKSTTGATNCVSSASGGQYHGCVFEGGVNGYNAPSA-SYLSXXXXVGNLTRGITAAS-TLSAYNCSFQSPGGDAI-RFTAAPG-MSVIHSCAFEGSGGYDINNTSGTSTNLVQRSNNVSYNAVSGHEAPGSFETPSFHFTQATSALFAAAGDFTPTAELKALALPK----LFENEAYTSYRDAGAVQHQDSGGGT 1329
            +AWTEFY+Q +G NTNSG T++++ TV+T NG W +   NRFTAASGTPF      D+ A+M DGA     ++++TAV+  G  +D++ T RIG  PAT A+GRT   GGAWA+  +AT G    ++G A VP+RINVKA TYAN +T+RT  TAGS T PIW RGYN  PGDL++D+  A PL ++    L ++GT    TN S   TG++ S   NW+ TNGRADR R E Q S     A  +G NGA    T+  FK  T A+   ++ S  Q HGCVFEGG N     SA + L+    +G  TR I AA+ T+   NCS      D+I R++++PG +S I +C F G+G YDI   SG  T+L+  +NN SY A  GH +    +    H+TQ TS   +  G   PT +  AL+  K     FENE + SYR  GA++ Q + GG+
Sbjct:    1 MAWTEFYLQPSGDNTNSGTTTSNTATVSTGNGSW-DTTTNRFTAASGTPFLGAVVGDWAAIMADGAIGFTSLSQITAVDPSGTYIDVTATGRIGVIPATSASGRTCKIGGAWADFAIATPGSQWGASGTAAVPMRINVKAATYANASTARTFATAGSGTAPIWIRGYNTTPGDLENDYTNAPPLLTFAAAGLTISGTCYCITNFSVLNTGSS-SAIWNWSGTNGRADRIRAEAQNSPSGVQAFTSGTNGAGMLVTNSWFKVPTTASQVYTATSTVQMHGCVFEGGQNAVTTSSAGTTLNHCVFIGQTTRAINAATATIFLMNCSLIGSFSDSIVRWSSSPGVLSSITNCVFSGAGKYDIEAASGF-THLIHAANNASYGAALGHLSHA--DLSDLHYTQETSDP-SVNGATDPTLKKTALSYQKGIGSAFENETWRSYRSVGAIEPQLTSGGS 447          
BLAST of mRNA_P-wetherbeei_contig11900.1.1 vs. uniprot
Match: A0A6P2D4Q6_9BACT (Uncharacterized protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2D4Q6_9BACT)

HSP 1 Score: 289 bits (739), Expect = 1.210e-89
Identity = 192/453 (42.38%), Postives = 264/453 (58.28%), Query Frame = 1
Query:    1 VAWTEFYMQLTGANTNSGHTSADSPTVTTTNGDWGNAAANRFTAASGTPFSALTTNDYVAVMLDGASVAALIARVTAVNAGGASVDLSTTDRIGTAPATGATGRTAVSGGAWANLGVATSGPL--SAGAAGVPLRINVKAGTYANTTTSRTIGTAGSTTNPIWFRGYNAAPGDLDDDFVTAKPLWSWTTGNLALNGTHTIATNISFFATGTAGSPTVNWAATNGRADRCRFENQTSGGSCSALITGNNGASFAATSCHFKSTTGATNCVSSASGGQYHGCVFEGGVNGYNAPSASY-LSXXXXVGNLTRGIT-AASTLSAYNCSFQSPGGD-AIRFTAAPG-MSVIHSCAFEGSGGYDINNTSGTSTNLVQRSNNVSYNAVSGHEAPGSFETPSFHFTQATSALFAAAGDFTPTAELKALA----LPKLFENEAYTSYRDAGAVQHQDSGGGT 1329
            +AW +FY+Q  G N+N+G T++++  V+TTNG W +   NRFTAASGTPFS     D+ A+MLDGA+    + ++TAV+ GG  +D++ T R+G APATGATGRT   GGAWA+ G+ TSG    ++    VP+RIN+KA TYANTT+SRT    GS + P+WFRGYN  PGDL++D+  A PL ++TTG L  NG +   +N+S  +T   G+   +W  T G ADR R ENQ +    +A  +G  G +   T+  FK+TT A    +  S   Y GCVF+GG +   + +A+  L     +   TR ++ + + L  Y CSF  P  D AIR+   PG MS + +C F G   YDI   SG  T ++  +NN SY A  GH     F    FHF Q  +  F   G   PT +  ALA    +   FEN ++ SYR  GAV+ Q S GG+
Sbjct:    1 MAWFDFYIQPGGDNSNAGTTTSNTAAVSTTNGAW-DTTTNRFTAASGTPFSGAAVGDFAAIMLDGAAGFTSLNQITAVDPGGTYIDVTATGRVGIAPATGATGRTCKIGGAWADFGIGTSGANFGTSSTNAVPIRINIKAATYANTTSSRTFAHIGSASAPVWFRGYNTTPGDLENDYTNAPPLVTFTTGVLNTNGAYYRISNLSVLSTAATGAA-WSWGGTQGIADRIRAENQNAASGANAFTSGGGGITMVVTNSWFKATTAANQVCTVTSTAAYSGCVFDGGTSAITSNAATVQLLNCVFINQTTRSLSLSTAALYCYGCSFVGPFSDSAIRWATTPGTMSYVLNCLFSGCARYDIEPVSGY-TGVLAVANNASYAATLGHLPSTDFND--FHFVQEPADPFT-NGATDPTIKKTALAYLAGIGNRFENVSWRSYRSVGAVEPQPSAGGS 447          
BLAST of mRNA_P-wetherbeei_contig11900.1.1 vs. uniprot
Match: A0A6P2DN96_9BACT (Uncharacterized protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2DN96_9BACT)

HSP 1 Score: 270 bits (690), Expect = 2.490e-82
Identity = 187/453 (41.28%), Postives = 262/453 (57.84%), Query Frame = 1
Query:    1 VAWTEFYMQLTGANTNSGHTSADSPTVTTTNGDWGNAAANRFTAASGTPFSALTTNDYVAVMLDGASVAALIARVTAVNAGGASVDLSTTDRIGTAPATGATGRTAVSGGAWANLGVATSGPLSAGAA--GVPLRINVKAGTYANTTTSRTIGTAGSTTNPIWFRGYNAAPGDLDDDFVTAKPLWSWTTGNLALNGTHTIATNISFFATGTAGSPTVNWAATNGRADRCRFENQTSGGSCSALITGNNGASFAATSCHFKSTTGATNCVSSASGGQYHGCVFEGGVNGYNAPSASYL-SXXXXVGNLTRGITAAST-LSAYNCSFQSPGGDAI-RFTAAPG-MSVIHSCAFEGSGGYDINNTSGTSTNLVQRSNNVSYNAVSGHEAPGSFETPSFHFTQATSALFAAAGDFTPTAELKALA----LPKLFENEAYTSYRDAGAVQHQDSGGGT 1329
            +AW  FYMQ  G NTNSG T++++ +V    G W + + NRFTAASGTPFS +   D+ A+MLDGA+    + ++TAV+ GG  +D++ T R+G AP TGA+GRT   GGAWA+  +AT+G +   ++   VPL INVKA TYAN + ++T   AG+ + PIW RGYNA PGDL++D+ TA P+ ++      ++GT    +N+S   TG++ S   NW+ TNG ADR R E Q +    SA   G NGA+    + +FK  +GAT  +++ S  Q+HGCVF+GG N      AS + +    +   TR I A++  L  +  SF  P  D+I R+   PG M  + +  F G+  YDI   SG  T L+  SNN SY A  GH   G  +    H+ Q ++  F   G   PT +  ALA    L   FEN A+ SYR  GAV+ Q   GG+
Sbjct:    1 MAWYNFYMQPAGDNTNSGTTTSNTASVXXXXGAW-DTSTNRFTAASGTPFSGVAVGDFAAIMLDGATGFTSLNQITAVDPGGTYIDVTATGRVGIAPVTGASGRTCKIGGAWADFTIATAGSMFGASSTNAVPLLINVKAATYANASAAKTFAHAGNVSAPIWIRGYNATPGDLENDYTTAPPVLTFAAAGFTISGTCYRVSNLSVMNTGSS-SAVWNWSGTNGIADRIRSEAQNTQAGASAFTCGGNGATMHVLNSYFKCWSGATQVLTATSAVQFHGCVFDGGQNAVTTSGASIIMNSCVCINQSTRAINASTAVLYLFGNSFVGPFSDSIVRWGTTPGAMGYVVNNVFSGAAKYDIEPVSGF-TQLLTISNNASYGATLGHLPSG--DLVDTHYIQESADPFT-NGATDPTLKKTALAYLAGLGSRFENVAWRSYRSPGAVEPQPPAGGS 447          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A142XKQ7_9BACT1.830e-9444.59Uncharacterized protein n=2 Tax=Gemmata TaxID=113 ... [more]
A0A6P2D4Q6_9BACT1.210e-8942.38Uncharacterized protein n=1 Tax=Gemmata massiliana... [more]
A0A6P2DN96_9BACT2.490e-8241.28Uncharacterized protein n=1 Tax=Gemmata massiliana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11900contigP-wetherbeei_contig11900:311..1666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1356
Hectar predicted targeting categoryother localisation
Exons1
Cds size1335
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.7474885-CDS-P-wetherbeei_contig11900:310..16451683185930.7474885-CDS-P-wetherbeei_contig11900:310..1645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11900 311..1645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.7578156-UTR-P-wetherbeei_contig11900:1645..16661683185930.7578156-UTR-P-wetherbeei_contig11900:1645..1666Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11900 1646..1666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11900.1.1prot_P-wetherbeei_contig11900.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11900 311..1645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11900.1.1

>prot_P-wetherbeei_contig11900.1.1 ID=prot_P-wetherbeei_contig11900.1.1|Name=mRNA_P-wetherbeei_contig11900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=445bp
MQLTGANTNSGHTSADSPTVTTTNGDWGNAAANRFTAASGTPFSALTTND
YVAVMLDGASVAALIARVTAVNAGGASVDLSTTDRIGTAPATGATGRTAV
SGGAWANLGVATSGPLSAGAAGVPLRINVKAGTYANTTTSRTIGTAGSTT
NPIWFRGYNAAPGDLDDDFVTAKPLWSWTTGNLALNGTHTIATNISFFAT
GTAGSPTVNWAATNGRADRCRFENQTSGGSCSALITGNNGASFAATSCHF
KSTTGATNCVSSASGGQYHGCVFEGGVNGYNAPSASYLSGCVFVGNLTRG
ITAASTLSAYNCSFQSPGGDAIRFTAAPGMSVIHSCAFEGSGGYDINNTS
GTSTNLVQRSNNVSYNAVSGHEAPGSFETPSFHFTQATSALFAAAGDFTP
TAELKALALPKLFENEAYTSYRDAGAVQHQDSGGGTAAPGGGDLG
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mRNA from alignment at P-wetherbeei_contig11900:311..1666-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11900.1.1 ID=mRNA_P-wetherbeei_contig11900.1.1|Name=mRNA_P-wetherbeei_contig11900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1356bp|location=Sequence derived from alignment at P-wetherbeei_contig11900:311..1666- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCCTGGACCGAATTTTACATGCAGTTGACCGGAGCGAACACGAACTC CGGTCACACCTCGGCCGACTCCCCGACCGTCACCACAACGAACGGTGACT GGGGGAACGCGGCCGCGAACCGTTTCACCGCGGCATCGGGCACCCCATTC AGCGCGCTGACGACGAACGACTACGTGGCCGTTATGCTCGACGGCGCTTC GGTCGCGGCCCTGATCGCGCGCGTGACGGCGGTGAACGCGGGCGGCGCGA GCGTTGACCTTTCCACGACGGACCGAATCGGTACGGCTCCGGCCACGGGT GCGACCGGTCGAACTGCGGTCTCTGGCGGGGCGTGGGCGAACCTGGGCGT GGCGACGAGCGGCCCTCTGTCCGCGGGGGCGGCCGGGGTTCCGTTGCGGA TCAACGTGAAGGCCGGCACTTACGCCAATACGACGACCAGTCGGACAATT GGCACGGCGGGATCGACAACAAATCCCATCTGGTTTCGCGGATACAACGC GGCGCCCGGCGACCTCGACGACGACTTCGTGACGGCCAAGCCCCTGTGGA GTTGGACGACGGGCAATCTGGCGCTCAACGGCACGCACACGATCGCGACC AATATCAGCTTCTTCGCGACCGGAACGGCGGGGTCGCCGACGGTCAACTG GGCCGCTACGAACGGCCGGGCCGACCGGTGTCGCTTCGAGAACCAAACGT CTGGCGGATCGTGTTCGGCACTCATCACGGGCAACAACGGCGCGTCATTC GCGGCCACGAGTTGCCACTTCAAATCGACGACCGGCGCGACGAACTGTGT CAGTTCGGCTTCGGGCGGACAGTACCACGGGTGTGTTTTCGAGGGCGGGG TTAACGGCTACAACGCGCCCTCGGCGTCGTACCTGAGCGGGTGCGTGTTC GTCGGGAACCTGACCCGGGGGATCACGGCCGCTTCGACCCTGAGTGCCTA CAACTGTTCGTTTCAATCGCCGGGCGGCGACGCGATCCGGTTCACGGCGG CGCCCGGCATGAGTGTCATTCACTCGTGCGCGTTCGAGGGATCGGGCGGG TACGACATCAACAACACCAGCGGCACGAGTACCAACCTCGTGCAGCGGTC GAACAACGTGAGCTACAACGCGGTGAGCGGGCACGAGGCGCCGGGCTCGT TCGAGACGCCGTCGTTCCACTTCACGCAGGCGACGTCGGCCCTGTTCGCG GCCGCGGGCGACTTCACCCCGACGGCCGAGCTCAAGGCGCTCGCCCTCCC GAAGTTGTTCGAGAACGAGGCGTACACGAGCTACCGGGACGCGGGCGCGG TGCAGCACCAGGACAGCGGGGGCGGCACCGCGGCCCCCGGCGGCGGCGAC CTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11900:311..1666-

>mRNA_P-wetherbeei_contig11900.1.1 ID=mRNA_P-wetherbeei_contig11900.1.1|Name=mRNA_P-wetherbeei_contig11900.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig11900:311..1666- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTTGACCGGAGCGAACACGAACTCCGGTCACACCTCGGCCGACTC
CCCGACCGTCACCACAACGAACGGTGACTGGGGGAACGCGGCCGCGAACC
GTTTCACCGCGGCATCGGGCACCCCATTCAGCGCGCTGACGACGAACGAC
TACGTGGCCGTTATGCTCGACGGCGCTTCGGTCGCGGCCCTGATCGCGCG
CGTGACGGCGGTGAACGCGGGCGGCGCGAGCGTTGACCTTTCCACGACGG
ACCGAATCGGTACGGCTCCGGCCACGGGTGCGACCGGTCGAACTGCGGTC
TCTGGCGGGGCGTGGGCGAACCTGGGCGTGGCGACGAGCGGCCCTCTGTC
CGCGGGGGCGGCCGGGGTTCCGTTGCGGATCAACGTGAAGGCCGGCACTT
ACGCCAATACGACGACCAGTCGGACAATTGGCACGGCGGGATCGACAACA
AATCCCATCTGGTTTCGCGGATACAACGCGGCGCCCGGCGACCTCGACGA
CGACTTCGTGACGGCCAAGCCCCTGTGGAGTTGGACGACGGGCAATCTGG
CGCTCAACGGCACGCACACGATCGCGACCAATATCAGCTTCTTCGCGACC
GGAACGGCGGGGTCGCCGACGGTCAACTGGGCCGCTACGAACGGCCGGGC
CGACCGGTGTCGCTTCGAGAACCAAACGTCTGGCGGATCGTGTTCGGCAC
TCATCACGGGCAACAACGGCGCGTCATTCGCGGCCACGAGTTGCCACTTC
AAATCGACGACCGGCGCGACGAACTGTGTCAGTTCGGCTTCGGGCGGACA
GTACCACGGGTGTGTTTTCGAGGGCGGGGTTAACGGCTACAACGCGCCCT
CGGCGTCGTACCTGAGCGGGTGCGTGTTCGTCGGGAACCTGACCCGGGGG
ATCACGGCCGCTTCGACCCTGAGTGCCTACAACTGTTCGTTTCAATCGCC
GGGCGGCGACGCGATCCGGTTCACGGCGGCGCCCGGCATGAGTGTCATTC
ACTCGTGCGCGTTCGAGGGATCGGGCGGGTACGACATCAACAACACCAGC
GGCACGAGTACCAACCTCGTGCAGCGGTCGAACAACGTGAGCTACAACGC
GGTGAGCGGGCACGAGGCGCCGGGCTCGTTCGAGACGCCGTCGTTCCACT
TCACGCAGGCGACGTCGGCCCTGTTCGCGGCCGCGGGCGACTTCACCCCG
ACGGCCGAGCTCAAGGCGCTCGCCCTCCCGAAGTTGTTCGAGAACGAGGC
GTACACGAGCTACCGGGACGCGGGCGCGGTGCAGCACCAGGACAGCGGGG
GCGGCACCGCGGCCCCCGGCGGCGGCGACCTGGGG
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