mRNA_P-wetherbeei_contig1190.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1190.1.1
Unique NamemRNA_P-wetherbeei_contig1190.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1190.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1190contigP-wetherbeei_contig1190:2724..3410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size498
Hectar predicted targeting categorymitochondrion
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.6127012-UTR-P-wetherbeei_contig1190:2723..27701683185930.6127012-UTR-P-wetherbeei_contig1190:2723..2770Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1190 2724..2770 +
1683185930.6527522-UTR-P-wetherbeei_contig1190:3235..34101683185930.6527522-UTR-P-wetherbeei_contig1190:3235..3410Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1190 3236..3410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.6231923-CDS-P-wetherbeei_contig1190:2770..29331683185930.6231923-CDS-P-wetherbeei_contig1190:2770..2933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1190 2771..2933 +
1683185930.6337261-CDS-P-wetherbeei_contig1190:3122..32351683185930.6337261-CDS-P-wetherbeei_contig1190:3122..3235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1190 3123..3235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1190.1.1prot_P-wetherbeei_contig1190.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1190 2771..3235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1190.1.1

>prot_P-wetherbeei_contig1190.1.1 ID=prot_P-wetherbeei_contig1190.1.1|Name=mRNA_P-wetherbeei_contig1190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MSRRMLVRGFSTVAAGLAGSDQVDRSDAAPEVSRHAAASEPSYCSHTPQQ
RKQAGQREQDLLGRHCCRQRRSFFELRAAPLPTSMLSAVSR*
back to top

mRNA from alignment at P-wetherbeei_contig1190:2724..3410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1190.1.1 ID=mRNA_P-wetherbeei_contig1190.1.1|Name=mRNA_P-wetherbeei_contig1190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig1190:2724..3410+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGGAAAAGATCGGCCAGTAGGTGGCGTCTTATATATGTTTCTGAGATG
TCTAGGCGGATGTTAGTACGAGGATTTTCAACGGTGGCAGCGGGGTTAGC
GGGATCAGACCAGGTAGATAGGTCAGATGCTGCACCAGAAGTGTCACGGC
ATGCTGCAGCATCAGAGCCTAGTTACTGCAGCCATACTCCGCAGCAGCGC
AAGCAAGCTGGCAAGCCATCCAAGGATTGTCATTTTTGAAGTTGTGCACC
GTCCCAACTCCGGCCGAGCATTGCTACTTCACCGAGTTTCCTTGCAAGCG
GGCACCAGCCCAATTTTGGTGTTTGCGTTCACGCTTACCATGCTTGCCTC
TGTCAGGTCTGACGCAAGCGTGTGCGCCTCGCATGCTGCTGAAAGGCAGG
ACAACGCGAACAGGACTTGTTGGGCCGCCATTGCTGCCGCCAACGGCGCT
CGTTTTTCGAGCTTAGGGCCGCACCACTGCCGACGTCCATGCTTTCAGCA
GTTTCAAGGTGAGGTTTTGCGTTTCGCCGACGATATCTAAATGCTGAACC
ACCCTCAGCCGATGCTGCGAGAGAGGAGTCGACTGCCTAGCAGCCGAATC
CTCTCTCAAGGGCGACCGGGCGGCCGAGCCGTGGCCTCCTGCAGCACGCT
ACTGCCGCCGGCGGCTGCCGCCGACGGGAGCAGAGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1190:2724..3410+

>mRNA_P-wetherbeei_contig1190.1.1 ID=mRNA_P-wetherbeei_contig1190.1.1|Name=mRNA_P-wetherbeei_contig1190.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig1190:2724..3410+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTAGGCGGATGTTAGTACGAGGATTTTCAACGGTGGCAGCGGGGTT
AGCGGGATCAGACCAGGTAGATAGGTCAGATGCTGCACCAGAAGTGTCAC
GGCATGCTGCAGCATCAGAGCCTAGTTACTGCAGCCATACTCCGCAGCAG
CGCAAGCAAGCTGGACAACGCGAACAGGACTTGTTGGGCCGCCATTGCTG
CCGCCAACGGCGCTCGTTTTTCGAGCTTAGGGCCGCACCACTGCCGACGT
CCATGCTTTCAGCAGTTTCAAGGTGA
back to top