mRNA_P-wetherbeei_contig1189.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1189.5.1
Unique NamemRNA_P-wetherbeei_contig1189.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.580e-46
Identity = 164/447 (36.69%), Postives = 220/447 (49.22%), Query Frame = 1
Query:  289 KKIWRRGKLVELEA-KDGAAFRDRAEERRKGVNPDYDDEVARIVEVDAEKSKYLGGDMKHTHLVRGLDYALLVKMREENRQQRAEQQRDAATAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVRTLAAKALYGVWQQLQSARESKVHGRVQDFSRVAYEFDMDPDSSVDIPVQIRRGRGDADDGEE------KRH-NYMMDDQLLQRLGRGLESFRQHG-KARRHRKRKAVSAPXXXXXXXVASTMATPVHSAMD----DDDNLAVAVGMAPQRRKLADDVDIFAGIGGTSSAAPSLQPAPLPLPTAPAAIPDYFINLRAAAGKRTAEKEAAATAAAVPSKEDIARSIRAAAXXXTARITGSDPXXXXXAVANADAMRSG--VVERDIFARAPVRGDAVAGHGGGGYDFYPENADYETYDSDEDA 1584
            K  WRRGKL+      D   +RDRA+ERRKG NPDY D++ ++  +DAE +KYLGGD++HTHLV+GLDYALLVK+REE RQQ+ E                                                         +  RTL  K +  V ++L  ++     G   DF RV YEF++DP+S+ +IP  +    GD  DGEE      +RH NY+M++ LL+R+      FRQHG KARR RKR    A XXXXXXX             D    D ++   AV    +R K++  ++IF  +        S   A  P   A  A   YF  LRA   K   + +  A    +P++ +++ +++AAA    AR++G D      A A       G   +ERDIFA  P RG A+ G   GGYD YPE  D+ETYDSDEDA
Sbjct:   87 KGTWRRGKLIVASGVNDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIE-------------------------------------VLEGDGGDDRSGDRRGGRAEVRARTLMGKTVLAVLRKLSLSQG----GGGPDFRRVGYEFELDPESTQEIPTAVAHSLGD--DGEEXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGXXXXXXXXXXXXXXXXXXXXDGGAGDMEDRDAAVLPPARRAKVS--INIFEDVDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRA---KNAGDSDNKADV--LPTRAEMSATVKAAARAAAARVSG-DKKTSSEAGARETGKSGGRDKIERDIFAARPSRGQAL-GVSAGGYDVYPETGDFETYDSDEDA 481          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: D7FT17_ECTSI (RED_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT17_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.830e-35
Identity = 143/404 (35.40%), Postives = 189/404 (46.78%), Query Frame = 1
Query:  421 VDAEKSKYLGGDMKHTHLVRGLDYALLVKMREENRQQRAEQQRDAATAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVRTLAAKALYGVWQQLQSARESKVHGRVQDFSRVAYEFDMDPDSSVDIPVQIRRGRGDADDGEE-------KRH-NYMMDDQLLQRLGRGLESFRQHG-KARRHRKRK-----AVSAPXXXXXXXVASTMATPVHSAMDDDDNLAVAVGMAPQRRKLADDVDIFAGIGGTSSAAPSLQPAPLPLPTAPAAIPDYFINLRAAAGKRTAEKEAAATAAAVPSKEDIARSIRAAAXXXTARITGSDPXXXXXAVANADAMRSG--VVERDIFARAPVRGDAVAGHGGGGYDFYPENADYETYDSDEDA 1584
            +DAE +KYLGGD++HTHLV+GLDYALLVK+REE RQQ+ E                                                         +  RTL  K +  V ++L   +     G   DF RV YEF++DP+S+ +IP  +    GD  DGEE       +RH NY+M++ LL+R+      FRQHG KARR RKR       V   XXXXXXX           A D +D  A  +   P  R+    ++IF  I        S   A  P   A  A   YF  LRA     +A+ +A      +P++ +++ +++AAA    AR++G D      A A       G   +ERDIFA  P RG A+ G   GGYD YPE  D+ETYDSDEDA
Sbjct:    1 MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIE-------------------------------------ILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQG----GGGPDFRRVGYEFELDPESTQEIPTAVAHSLGD--DGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGGVGXXXXXXXXXXXXXXXXXXGGAGDTEDRDAAVL---PPARRAKVSINIFEDIDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDSADNKADV----LPTRAEMSATVKAAARAAAARVSG-DKKASSGAGARETGKSGGRDKIERDIFAARPSRGQAL-GVSAGGYDVYPETGDFETYDSDEDA 352          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A7S3XKR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKR5_HETAK)

HSP 1 Score: 112 bits (279), Expect = 3.270e-23
Identity = 92/235 (39.15%), Postives = 132/235 (56.17%), Query Frame = 1
Query:  325 EAKDGAAFRDRAEERRKGVNPDYDDEVARIVEVDAEKSKYLGGDMKHTHLVRGLDYALLVKMREENRQQRAEQQRDAATAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPVRTLAAKALYGVWQQLQSARESKVHGRVQDFSRVAYEFDMDPDSSVDIPVQIRRGRGDADDGEEKRHNYMMDDQLLQRLGRGLESFRQHGKARRHRKRKAVSAP 1029
            E ++   +RDRA ERR+G NPDYDD++ ++V++D EKSKYLGGD+KHTHLVRGLDYALL K+R+E  +Q+ +Q      A                              XXXXXXXXXXXXXXXXX    V  +  +   G   QL  A+ S +   VQ F ++++EFD+DP S+ ++P  + + + DA+  ++      +DD L Q + +     RQ  KA + R++K    P
Sbjct:  107 EIEENQGYRDRAAERRQGYNPDYDDDIEKMVQMDVEKSKYLGGDVKHTHLVRGLDYALLNKVRQETLEQQQQQLEATLEA----------------------QKKSKVQGXXXXXXXXXXXXXXXXXLAAAVARMRTRTPLGRGVQLYFAQRS-LRAPVQ-FGQLSFEFDLDPASAQEVPTTVSKAKADAEAEDDTLETAALDDALAQAVEQAFVGIRQGLKAGKRRRKKGRGQP 317          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A4D9CVF8_9STRA (RED_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.120e-17
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 1
Query:  328 AKDGAAFRDRAEERRKGVNPDYDDEVARIVEVDAEKSKYLGGDMKHTHLVRGLDYALLVKMR 513
            A +   +RDRAEERRKGVNPDY+DE+AR+V +DAE +KYLGGD+KHTHLV+GLDYALL ++R
Sbjct:  144 ASEEGGYRDRAEERRKGVNPDYEDEIARLVHMDAETTKYLGGDVKHTHLVKGLDYALLQRVR 205          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A7S2W4J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.640e-14
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 1
Query:  346 FRDRAEERRKGVNPDYDDEVARIVEVDAEKSKYLGGDMKHTHLVRGLDYALLVKMREE 519
            +RDRA ERRK +NPDY  +V +++EVD EKSKYLGGD++HTHLV+GLDYALL K+R+E
Sbjct:   72 YRDRANERRKEINPDYKTDVQKLLEVDIEKSKYLGGDVEHTHLVKGLDYALLSKVRDE 129          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A812YWK0_SYMMI (SMU2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YWK0_SYMMI)

HSP 1 Score: 77.8 bits (190), Expect = 9.200e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  346 FRDRAEERRKGVNPDYDDEVARIVEVDAEKSKYLGGDMKHTHLVRGLDYALLVKMREENRQQRAEQQ 546
            +RDRA+ERR   NPDYD ++  +  +D E++KYLGGD +HTHLV+GLDYALL K+R +  +  A  Q
Sbjct:   73 YRDRAQERRNDANPDYDAQLEAVANLDVEQTKYLGGDEEHTHLVKGLDYALLRKVRNQTEKNEARDQ 139          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A5J4XX10_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XX10_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-11
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  262 KKEPAAPAVKKIWRRGKLVELEAKDGAAFRDRAEERRKGVNPDYDDEVARIVEVDA--------EKSKYLGGDMKHTHLVRGLDYALLVKMREENRQQRAEQQRDA 555
            KK+P  P       + K  + EA +G  +RDRAEERRKG+NPDY+      +  DA        E++KYLGGD++HTHLV+GLDYALL K++ E   ++ ++ +D+
Sbjct:   48 KKKPPRP-------KPKAEKEEADEGPLYRDRAEERRKGLNPDYERTALSGLPTDAPLNPTMSVEETKYLGGDLQHTHLVKGLDYALLQKVKVEQTGKQLQEMQDS 146          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A7S0X157_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X157_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-10
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  271 PAAPAVKKIWRRGKLVELEAKD-GAAFRDRAEERRKGVNPDYD--DEVARIV--------EVDAEKSKYLGGDMKHTHLVRGLDYALLVKMR 513
            P  PA K   + G   + E +D G  +RDRAEERR+GVN DY   +E+  ++        ++  E SKYLGGD++HTHLVRGLDYALL KMR
Sbjct:   51 PKKPAYKPKPKPGAAKDDEEEDDGPKYRDRAEERRRGVNLDYTKANELLGVIGSNDVDPTKLSVEDSKYLGGDLEHTHLVRGLDYALLQKMR 142          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A7R9Z3L9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z3L9_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 2.320e-10
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  325 EAKDGAAFRDRAEERRKGVNPDYD--DEVARIVEVDA-------EKSKYLGGDMKHTHLVRGLDYALLVKMR 513
            E  DG  +RDRAEERR+G+NPDY   +++A  +  D        E++KYLGGD++HTHLV+GLD+ALL K R
Sbjct:   66 EEDDGPKYRDRAEERRRGINPDYASANQLAAALPGDVDMNALSVEETKYLGGDIEHTHLVKGLDFALLQKER 137          
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Match: A0A0L0HLB9_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HLB9_SPIPD)

HSP 1 Score: 74.3 bits (181), Expect = 2.710e-10
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  289 KKIWRR-GKLVELEAKDGAAFRDRAEERRKGVNPDYDDEVARIVEVDA------------------EKSKYLGGDMKHTHLVRGLDYALLVKMREENRQQRAEQQRD 552
            KK+W+   K    ++ +G  +RDRA ERR+G NPDY++    +  + A                  E+SKYLGGD KHTHLV+GLDYALL K++ E +Q+ AE++++
Sbjct:   54 KKLWKPPSKEGASQSDNGPGYRDRARERREGANPDYEETEQMLAVLKASEQSQNADRTETDTSLSIEQSKYLGGDAKHTHLVKGLDYALLEKVQRELQQKDAEEKKE 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1189.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4J3_9PHAE1.580e-4636.69RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FT17_ECTSI3.830e-3535.40RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3XKR5_HETAK3.270e-2339.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CVF8_9STRA3.120e-1770.97RED_N domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2W4J1_9STRA1.640e-1468.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812YWK0_SYMMI9.200e-1253.73SMU2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A5J4XX10_9CHLO1.300e-1143.40Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A7S0X157_9CHLO1.190e-1050.00Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7R9Z3L9_9CHLO2.320e-1052.78Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A0L0HLB9_SPIPD2.710e-1041.12Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1189contigP-wetherbeei_contig1189:5825..7541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT17
Preferred nameIK
PFAMsRED_C,RED_N
Model size1717
Max annot lvl2759|Eukaryota
KEGG koko:K13109
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0022402,GO:0023052,GO:0030071,GO:0030154,GO:0030182,GO:0031323,GO:0031577,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034641,GO:0040011,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051252,GO:0051641,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0070727,GO:0071005,GO:0071011,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072553,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903311,GO:1905818,GO:1905819,GO:1990904,GO:2000816,GO:2001251
Exons1
Evalue4.2e-36
EggNOG OGsKOG2498@1|root,KOG2498@2759|Eukaryota
Ec32 ortholog descriptionRED-like, N-terminal
Ec32 orthologEc-04_002420.1
Descriptionprotein localization to kinetochore
Cds size1623
COG categoryQ
BRITEko00000,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.1321902-UTR-P-wetherbeei_contig1189:5824..58401683185930.1321902-UTR-P-wetherbeei_contig1189:5824..5840Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1189 5825..5840 -
1683185930.148383-UTR-P-wetherbeei_contig1189:7463..75411683185930.148383-UTR-P-wetherbeei_contig1189:7463..7541Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1189 7464..7541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.1412406-CDS-P-wetherbeei_contig1189:5840..74631683185930.1412406-CDS-P-wetherbeei_contig1189:5840..7463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1189 5841..7463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1189.5.1prot_P-wetherbeei_contig1189.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1189 5841..7463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1189.5.1

>prot_P-wetherbeei_contig1189.5.1 ID=prot_P-wetherbeei_contig1189.5.1|Name=mRNA_P-wetherbeei_contig1189.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=541bp
MADDNGIDRLKGRDADEIATLKKLILDEKSRKKSQQTPAPRRRGVGGGDS
DEEEEKERKLGKKEPAAPAVKKIWRRGKLVELEAKDGAAFRDRAEERRKG
VNPDYDDEVARIVEVDAEKSKYLGGDMKHTHLVRGLDYALLVKMREENRQ
QRAEQQRDAATAFAAASTAVAASEKGAGAGGVTGTAAGAGAGAAAGADGS
RRQQQLQQQQQLPVRTLAAKALYGVWQQLQSARESKVHGRVQDFSRVAYE
FDMDPDSSVDIPVQIRRGRGDADDGEEKRHNYMMDDQLLQRLGRGLESFR
QHGKARRHRKRKAVSAPSASSAPSVASTMATPVHSAMDDDDNLAVAVGMA
PQRRKLADDVDIFAGIGGTSSAAPSLQPAPLPLPTAPAAIPDYFINLRAA
AGKRTAEKEAAATAAAVPSKEDIARSIRAAAAAATARITGSDPAAAAAAV
ANADAMRSGVVERDIFARAPVRGDAVAGHGGGGYDFYPENADYETYDSDE
DAEAASAARRDGMGGGSGGGGKREGKGGGKSGGKRKEPKQ*
back to top

mRNA from alignment at P-wetherbeei_contig1189:5825..7541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1189.5.1 ID=mRNA_P-wetherbeei_contig1189.5.1|Name=mRNA_P-wetherbeei_contig1189.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1717bp|location=Sequence derived from alignment at P-wetherbeei_contig1189:5825..7541- (Phaeothamnion wetherbeei SAG_119_79)
CGCAGTTCTGCTCTTCGTTGCGACACTGAAATAAGCCGTCTTGAGGCGAA AGGGAACCTGGTTCGCCTGCAGGCGCGAATGGCGGACGACAATGGCATCG ACCGCCTTAAAGGACGTGATGCAGATGAAATTGCCACGCTAAAGAAGCTA ATTCTCGACGAAAAATCGAGAAAGAAGAGCCAGCAGACGCCTGCACCGCG ACGAAGAGGAGTCGGAGGTGGCGATTCGGACGAAGAGGAGGAGAAAGAGC GGAAGCTCGGCAAAAAGGAGCCGGCGGCGCCGGCCGTCAAGAAGATTTGG CGCCGCGGCAAGCTCGTCGAGCTCGAGGCGAAGGATGGTGCTGCCTTCCG CGACCGCGCGGAGGAGCGGCGCAAGGGCGTCAACCCTGACTACGACGACG AGGTGGCGCGGATCGTGGAGGTGGATGCAGAGAAGTCGAAATACCTCGGC GGAGACATGAAGCACACGCATTTGGTGAGGGGTCTGGACTATGCCCTCCT CGTCAAGATGCGCGAGGAGAACCGCCAGCAGCGCGCCGAACAGCAGCGCG ACGCCGCAACAGCCTTCGCCGCCGCATCGACGGCCGTCGCCGCGAGCGAG AAAGGCGCCGGCGCCGGCGGCGTGACAGGCACCGCTGCGGGAGCGGGCGC CGGGGCGGCGGCGGGCGCTGACGGGTCACGGCGGCAGCAGCAGCTGCAAC AGCAGCAGCAGCTGCCTGTGCGGACGCTGGCGGCAAAGGCGCTATATGGC GTGTGGCAGCAGCTGCAGTCGGCACGGGAGAGCAAGGTGCACGGCCGCGT GCAGGACTTCTCGCGGGTCGCGTACGAGTTCGACATGGATCCGGATTCGT CCGTCGATATTCCGGTGCAGATCCGCCGTGGCCGGGGCGACGCCGATGAT GGCGAGGAAAAGCGGCACAACTACATGATGGACGACCAGCTGCTGCAGCG GCTCGGCCGCGGGCTGGAGTCGTTCCGGCAGCACGGCAAGGCACGGCGGC ATCGGAAGCGCAAGGCAGTGTCGGCGCCCTCCGCTTCTTCGGCGCCCTCG GTCGCTTCTACGATGGCGACGCCGGTGCATTCGGCGATGGATGATGACGA TAACTTGGCGGTGGCGGTGGGGATGGCGCCGCAGCGGCGAAAGCTGGCGG ATGATGTTGACATTTTTGCTGGGATCGGTGGCACCAGCAGTGCAGCCCCA TCCTTGCAGCCGGCGCCGCTGCCGCTCCCGACCGCGCCGGCAGCCATCCC GGACTACTTTATCAACCTGCGCGCCGCTGCGGGAAAACGCACCGCCGAGA AAGAAGCCGCAGCTACAGCCGCAGCGGTGCCGTCCAAAGAAGATATTGCC CGCAGCATCCGCGCTGCCGCCGCGGCCGCGACGGCCCGCATCACCGGCTC CGACCCCGCCGCCGCCGCGGCCGCCGTTGCAAATGCCGATGCCATGCGAA GCGGCGTGGTGGAGCGGGACATCTTTGCAAGGGCACCGGTGCGCGGTGAC GCTGTTGCAGGCCATGGCGGCGGCGGTTACGACTTCTATCCCGAAAACGC GGACTATGAGACGTACGACAGCGACGAGGACGCCGAGGCGGCGTCAGCGG CGAGGCGCGACGGGATGGGTGGCGGCAGCGGCGGCGGCGGGAAGCGGGAA GGCAAAGGTGGCGGAAAGTCCGGCGGAAAGCGAAAAGAGCCGAAACAGTA AAAGAAATAAGGTGCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1189:5825..7541-

>mRNA_P-wetherbeei_contig1189.5.1 ID=mRNA_P-wetherbeei_contig1189.5.1|Name=mRNA_P-wetherbeei_contig1189.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1623bp|location=Sequence derived from alignment at P-wetherbeei_contig1189:5825..7541- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACGACAATGGCATCGACCGCCTTAAAGGACGTGATGCAGATGA
AATTGCCACGCTAAAGAAGCTAATTCTCGACGAAAAATCGAGAAAGAAGA
GCCAGCAGACGCCTGCACCGCGACGAAGAGGAGTCGGAGGTGGCGATTCG
GACGAAGAGGAGGAGAAAGAGCGGAAGCTCGGCAAAAAGGAGCCGGCGGC
GCCGGCCGTCAAGAAGATTTGGCGCCGCGGCAAGCTCGTCGAGCTCGAGG
CGAAGGATGGTGCTGCCTTCCGCGACCGCGCGGAGGAGCGGCGCAAGGGC
GTCAACCCTGACTACGACGACGAGGTGGCGCGGATCGTGGAGGTGGATGC
AGAGAAGTCGAAATACCTCGGCGGAGACATGAAGCACACGCATTTGGTGA
GGGGTCTGGACTATGCCCTCCTCGTCAAGATGCGCGAGGAGAACCGCCAG
CAGCGCGCCGAACAGCAGCGCGACGCCGCAACAGCCTTCGCCGCCGCATC
GACGGCCGTCGCCGCGAGCGAGAAAGGCGCCGGCGCCGGCGGCGTGACAG
GCACCGCTGCGGGAGCGGGCGCCGGGGCGGCGGCGGGCGCTGACGGGTCA
CGGCGGCAGCAGCAGCTGCAACAGCAGCAGCAGCTGCCTGTGCGGACGCT
GGCGGCAAAGGCGCTATATGGCGTGTGGCAGCAGCTGCAGTCGGCACGGG
AGAGCAAGGTGCACGGCCGCGTGCAGGACTTCTCGCGGGTCGCGTACGAG
TTCGACATGGATCCGGATTCGTCCGTCGATATTCCGGTGCAGATCCGCCG
TGGCCGGGGCGACGCCGATGATGGCGAGGAAAAGCGGCACAACTACATGA
TGGACGACCAGCTGCTGCAGCGGCTCGGCCGCGGGCTGGAGTCGTTCCGG
CAGCACGGCAAGGCACGGCGGCATCGGAAGCGCAAGGCAGTGTCGGCGCC
CTCCGCTTCTTCGGCGCCCTCGGTCGCTTCTACGATGGCGACGCCGGTGC
ATTCGGCGATGGATGATGACGATAACTTGGCGGTGGCGGTGGGGATGGCG
CCGCAGCGGCGAAAGCTGGCGGATGATGTTGACATTTTTGCTGGGATCGG
TGGCACCAGCAGTGCAGCCCCATCCTTGCAGCCGGCGCCGCTGCCGCTCC
CGACCGCGCCGGCAGCCATCCCGGACTACTTTATCAACCTGCGCGCCGCT
GCGGGAAAACGCACCGCCGAGAAAGAAGCCGCAGCTACAGCCGCAGCGGT
GCCGTCCAAAGAAGATATTGCCCGCAGCATCCGCGCTGCCGCCGCGGCCG
CGACGGCCCGCATCACCGGCTCCGACCCCGCCGCCGCCGCGGCCGCCGTT
GCAAATGCCGATGCCATGCGAAGCGGCGTGGTGGAGCGGGACATCTTTGC
AAGGGCACCGGTGCGCGGTGACGCTGTTGCAGGCCATGGCGGCGGCGGTT
ACGACTTCTATCCCGAAAACGCGGACTATGAGACGTACGACAGCGACGAG
GACGCCGAGGCGGCGTCAGCGGCGAGGCGCGACGGGATGGGTGGCGGCAG
CGGCGGCGGCGGGAAGCGGGAAGGCAAAGGTGGCGGAAAGTCCGGCGGAA
AGCGAAAAGAGCCGAAACAGTAA
back to top