mRNA_P-wetherbeei_contig11881.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11881.2.2
Unique NamemRNA_P-wetherbeei_contig11881.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11881.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11881contigP-wetherbeei_contig11881:765..1397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size241
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.7384346-UTR-P-wetherbeei_contig11881:764..8241683185929.7384346-UTR-P-wetherbeei_contig11881:764..824Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11881 765..824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.748707-CDS-P-wetherbeei_contig11881:824..8521683185929.748707-CDS-P-wetherbeei_contig11881:824..852Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11881 825..852 -
1683185929.7560332-CDS-P-wetherbeei_contig11881:1245..13971683185929.7560332-CDS-P-wetherbeei_contig11881:1245..1397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11881 1246..1397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11881.2.2prot_P-wetherbeei_contig11881.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11881 825..1397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11881.2.2

>prot_P-wetherbeei_contig11881.2.2 ID=prot_P-wetherbeei_contig11881.2.2|Name=mRNA_P-wetherbeei_contig11881.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
TQGRTSPGRGPLRWQGREISGKPARSRAAIKSEPAAEGRDPPRQDAPHQR
REPAGRDGA*
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mRNA from alignment at P-wetherbeei_contig11881:765..1397-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11881.2.2 ID=mRNA_P-wetherbeei_contig11881.2.2|Name=mRNA_P-wetherbeei_contig11881.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=633bp|location=Sequence derived from alignment at P-wetherbeei_contig11881:765..1397- (Phaeothamnion wetherbeei SAG_119_79)
ACTCAAGGACGCACTTCTCCTGGGCGAGGGCCCCTACGCTGGCAAGGACG
AGAAATTTCTGGAAAGCCAGCTCGTAGCCGTGCAGCAATAAAAAGCGAGC
CTGCGGCGGAAGGAAGAGATCCTCCTCGCCAGGATGCCCCCCATCAACGA
AGGTGCGTTCGGGAAGATGGAATTCCCGCAAAATCTGGACTTTTGGTCCC
ATATGCAACGTTTGCTGACACGTTCCGGTACGCACGTGTTGATCAGAATT
CCTTCCATGTTTCCGTCTATCATCGTGAGCTGCGATCTTGTAAACGCGAT
AGCCACAAGCTCAGGGCTCTAACATGGTTTTGTTAAATGTCGAGGGTCCT
AAAAGTCGCGCCGTCTCTGTACGCCTGGCTCGCCATGGCCGTGCCGTCAC
CCCATCCAGCTTCCTGCGTCCGCCGCGCTGCCGCCGTCGGCACGCCGGAT
GCACCGTTGCCGTGATCACTAACCACGACGTCGTGACTGCCGCTGCTGGC
AACGCTTCCGTTCCGTGGATCTTGCTGCACTCTCTCCAATCATAGGGAGC
CAGCGGGTCGTGACGGCGCGTAGCTGGCAGGAGTGGCTTCTGGAGCGCGG
CTGGTGGCGTGCGGCAGATGAAGACGACGAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11881:765..1397-

>mRNA_P-wetherbeei_contig11881.2.2 ID=mRNA_P-wetherbeei_contig11881.2.2|Name=mRNA_P-wetherbeei_contig11881.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig11881:765..1397- (Phaeothamnion wetherbeei SAG_119_79)
ACTCAAGGACGCACTTCTCCTGGGCGAGGGCCCCTACGCTGGCAAGGACG
AGAAATTTCTGGAAAGCCAGCTCGTAGCCGTGCAGCAATAAAAAGCGAGC
CTGCGGCGGAAGGAAGAGATCCTCCTCGCCAGGATGCCCCCCATCAACGA
AGGGAGCCAGCGGGTCGTGACGGCGCGTAG
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