mRNA_P-wetherbeei_contig11862.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11862.1.1
Unique NamemRNA_P-wetherbeei_contig11862.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A0C2ZHK6_9AGAM (Bromo domain-containing protein (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C2ZHK6_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 8.220e-8
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   67 RMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            ++I  P+ +ST+ +R++A  Y S + F  DWKL+ DN +  NQEGS + +DA++M++
Sbjct:    8 QLITHPIALSTLRKRISANYYKSISHFRDDWKLMFDNVRTHNQEGSWVYVDAEEMEK 64
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A0C9YW66_9AGAM (Unplaced genomic scaffold scaffold_256, whole genome shotgun sequence n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0C9YW66_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 3.260e-7
Identity = 24/57 (42.11%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   67 RMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            ++I +P+ +ST+ +R+ A  Y S  QF++DWKL+ DN + +NQEGS + +DA++M++
Sbjct: 1242 QLITQPIALSTLRKRMNAGYYKSITQFKEDWKLMFDNARTYNQEGSWVYVDAEEMEK 1298
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: V9KKV6_CALMI (Cat eye syndrome critical region protein 2-like protein (Fragment) n=2 Tax=Callorhinchus milii TaxID=7868 RepID=V9KKV6_CALMI)

HSP 1 Score: 59.7 bits (143), Expect = 7.220e-7
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   67 RMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDRCCLLLSVRSVFRYVP 282
            ++I++PM++STIE  L A+QY+S   F  D+KL+ +NC+K+N  G+   L A+ ++RC      ++V +Y P
Sbjct:  512 KIIKEPMDLSTIERMLNAKQYNSKWTFISDFKLMFENCEKYNGRGNEYTLMARTVERCFN----KAVVKYFP 579
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A4W3JW74_CALMI (Bromo domain-containing protein n=6 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3JW74_CALMI)

HSP 1 Score: 59.7 bits (143), Expect = 8.050e-7
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:   67 RMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDRCCLLLSVRSVFRYVP 282
            ++I++PM++STIE  L A+QY+S   F  D+KL+ +NC+K+N  G+   L A+ ++RC      ++V +Y P
Sbjct:  434 KIIKEPMDLSTIERMLNAKQYNSKWTFISDFKLMFENCEKYNGRGNEYTLMARTVERCFN----KAVVKYFP 501
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A4R0RFM2_9APHY (Uncharacterized protein n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0RFM2_9APHY)

HSP 1 Score: 59.7 bits (143), Expect = 8.090e-7
Identity = 25/71 (35.21%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   49 FRSVPRR--------MIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            FR VP +        +I++P+ ++T+ +R+ +  Y S   FEKDW+L+ +N + +NQEGS + +DA++M++
Sbjct: 1335 FREVPDKREYPDYYQLIKQPIALATLRKRIGSNYYKSVTDFEKDWRLMFNNARTYNQEGSWVYVDAEEMEK 1405
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A0C9ZT36_9AGAM (Bromo domain-containing protein n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0C9ZT36_9AGAM)

HSP 1 Score: 55.8 bits (133), Expect = 1.230e-6
Identity = 22/53 (41.51%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   79 KPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            +P+ +ST+ +R  A  Y S  Q+++DWKL+ DN + +NQEGS + +DA++M++
Sbjct:    1 RPIALSTLRKRGNAGYYKSITQYKEDWKLMFDNARTYNQEGSWVYIDAEEMEK 53
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A0C2ZC83_9AGAM (Uncharacterized protein n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C2ZC83_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-6
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   67 RMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            ++I  P+ +ST+ +R+ A  Y S + F  DWKL+ DN + +NQEGS + +DA++M++
Sbjct: 1298 QLITHPIALSTLRKRIGANYYKSISHFRDDWKLMFDNARTYNQEGSWVYVDAEEMEK 1354
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A0C9W1M9_9AGAM (Uncharacterized protein n=1 Tax=Hydnomerulius pinastri MD-312 TaxID=994086 RepID=A0A0C9W1M9_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-6
Identity = 23/57 (40.35%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   67 RMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            ++I +P+ +STI +R+    Y S  Q+++DWKL+ DN + +NQEGS + +DA++M++
Sbjct: 1318 QLITQPIALSTIRKRVNTGYYKSVTQYKEDWKLMFDNARTYNQEGSWVYIDAEEMEK 1374
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: J9JMN1_ACYPI (Uncharacterized protein n=29 Tax=Aphididae TaxID=27482 RepID=J9JMN1_ACYPI)

HSP 1 Score: 58.9 bits (141), Expect = 1.490e-6
Identity = 29/82 (35.37%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 PLCLFPGVPATLLLPPFRSVPRRMIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDRCCL 246
            P+ +F  +P+  L P +  V    I +P+++ TIEE++   +Y S  +  +D+KL+ DNC++FN+EGS I  DA  +++  L
Sbjct:  526 PMLMFMEIPSKKLYPAYYKV----ISEPIDMLTIEEKIKQEKYKSEDEILQDFKLMFDNCRQFNEEGSLIYEDANTLEKVLL 603
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BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Match: A0A2G5B856_COERN (Bromodomain-containing protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B856_COERN)

HSP 1 Score: 53.9 bits (128), Expect = 2.500e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   70 MIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLDAQDMDR 237
            +IR+P+ I TI   + A +Y+S A F  DWKL+ DN + +N+EGS +  DA  + R
Sbjct:   16 IIRQPIAIKTIRRNVKAHKYASVAAFHHDWKLMFDNARTYNEEGSMVYNDACALQR 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2ZHK6_9AGAM8.220e-840.35Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A0C9YW66_9AGAM3.260e-742.11Unplaced genomic scaffold scaffold_256, whole geno... [more]
V9KKV6_CALMI7.220e-738.89Cat eye syndrome critical region protein 2-like pr... [more]
A0A4W3JW74_CALMI8.050e-738.89Bromo domain-containing protein n=6 Tax=Callorhinc... [more]
A0A4R0RFM2_9APHY8.090e-735.21Uncharacterized protein n=1 Tax=Steccherinum ochra... [more]
A0A0C9ZT36_9AGAM1.230e-641.51Bromo domain-containing protein n=1 Tax=Suillus lu... [more]
A0A0C2ZC83_9AGAM1.470e-640.35Uncharacterized protein n=1 Tax=Scleroderma citrin... [more]
A0A0C9W1M9_9AGAM1.470e-640.35Uncharacterized protein n=1 Tax=Hydnomerulius pina... [more]
J9JMN1_ACYPI1.490e-635.37Uncharacterized protein n=29 Tax=Aphididae TaxID=2... [more]
A0A2G5B856_COERN2.500e-642.86Bromodomain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11862contigP-wetherbeei_contig11862:359..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog40483.S8DYG7
Preferred namesnf21
PFAMsBromodomain,HSA,Helicase_C,QLQ,SNF2_N,SnAC
Model size647
Max annot lvl4751|Fungi
KEGG koko:K11786
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007059,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010959,GO:0015616,GO:0016043,GO:0016070,GO:0016458,GO:0016462,GO:0016514,GO:0016584,GO:0016586,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022411,GO:0022414,GO:0022607,GO:0030554,GO:0031055,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031498,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032879,GO:0032984,GO:0032986,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0034756,GO:0035639,GO:0036094,GO:0040029,GO:0042393,GO:0042623,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061587,GO:0065007,GO:0070013,GO:0070035,GO:0070577,GO:0070603,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0140030,GO:0140033,GO:0140097,GO:0140110,GO:1900390,GO:1900393,GO:1900400,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue5.84e-08
EggNOG OGsCOG0553@1|root,KOG0386@2759|Eukaryota,38FDR@33154|Opisthokonta,3NX7W@4751|Fungi,3UYM1@5204|Basidiomycota,227YU@155619|Agaricomycetes,3H4D8@355688|Agaricomycetes incertae sedis
DescriptionSnf2-ATP coupling, chromatin remodelling complex
Cds size222
COG categoryBK
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.9858623-UTR-P-wetherbeei_contig11862:358..7141683185928.9858623-UTR-P-wetherbeei_contig11862:358..714Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11862 359..714 -
1683185929.0051994-UTR-P-wetherbeei_contig11862:936..10051683185929.0051994-UTR-P-wetherbeei_contig11862:936..1005Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11862 937..1005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.9979937-CDS-P-wetherbeei_contig11862:714..9361683185928.9979937-CDS-P-wetherbeei_contig11862:714..936Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11862 715..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11862.1.1prot_P-wetherbeei_contig11862.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11862 715..936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11862.1.1

>prot_P-wetherbeei_contig11862.1.1 ID=prot_P-wetherbeei_contig11862.1.1|Name=mRNA_P-wetherbeei_contig11862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
MIRKPMEISTIEERLAARQYSSSAQFEKDWKLIIDNCKKFNQEGSSICLD
AQDMDRCCLLLSVRSVFRYVPFP*
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mRNA from alignment at P-wetherbeei_contig11862:359..1005-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11862.1.1 ID=mRNA_P-wetherbeei_contig11862.1.1|Name=mRNA_P-wetherbeei_contig11862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=647bp|location=Sequence derived from alignment at P-wetherbeei_contig11862:359..1005- (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTGCTTATTCCCTGGGGTACCGGCTACGCTGCTGTTGCCTCCCTT
CCGTTCCGTGCCGCGTAGGATGATTCGCAAGCCGATGGAGATCTCTACAA
TCGAGGAGCGGCTGGCGGCGCGGCAGTACTCTTCGAGCGCGCAGTTCGAG
AAGGACTGGAAGCTTATCATCGACAACTGCAAGAAGTTCAACCAGGAAGG
ATCCTCTATTTGCCTTGACGCCCAAGACATGGACAGGTGCTGTTTGTTGT
TGTCGGTTCGTTCCGTTTTCCGTTACGTTCCCTTTCCTTGAGCTCCGTTC
CGTTTCGGTTCATAGCTCTTTGTCGGGCTGGTTTGCTCTGGTTTCGTACC
TTATCTCACCATGCCTCCTTTCCACTTTCTTTGGGGTGGTGTAATCGTCG
CACTGGGTGGTGAAGTTCTGGTTGATGGGCAGAATGAGAGCGATCGAGTC
ATTATATTTAGATGAACGTGGAGAAGTGTCTGCGTGGCGTCATTTCTGCC
CCAAGCAACAAGCCACAGATCCACCGAGGCATTCGAAACATCGCGGCGTC
TTCGGTTCGTTCCTTCGCTTTCCGTCTCCCCACCTCTCCGGCTTTCACCG
CTGTACCTATGCAGGTGCTTCCACGAGCACATGGAGCCGCTGCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11862:359..1005-

>mRNA_P-wetherbeei_contig11862.1.1 ID=mRNA_P-wetherbeei_contig11862.1.1|Name=mRNA_P-wetherbeei_contig11862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig11862:359..1005- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCGCAAGCCGATGGAGATCTCTACAATCGAGGAGCGGCTGGCGGC
GCGGCAGTACTCTTCGAGCGCGCAGTTCGAGAAGGACTGGAAGCTTATCA
TCGACAACTGCAAGAAGTTCAACCAGGAAGGATCCTCTATTTGCCTTGAC
GCCCAAGACATGGACAGGTGCTGTTTGTTGTTGTCGGTTCGTTCCGTTTT
CCGTTACGTTCCCTTTCCTTGA
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