mRNA_P-wetherbeei_contig11843.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11843.1.2
Unique NamemRNA_P-wetherbeei_contig11843.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835Z948_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.450e-36
Identity = 92/282 (32.62%), Postives = 138/282 (48.94%), Query Frame = 3
Query:  291 QVGALTFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNELTVPGFNQLFPLLPPPEEPEPDDVPPSRHVRRLVDFALFSPSSPAPQFSRALTATEAEATSAEITATTEPAAAPLVGVVRNSVHEHATHAKASLCNYYTDAAMVLVIEEFYRRDYDLFGM 1136
            +VG  +FN LF + + ++D    ++A+GR  W  N      M  +D++  +++  W KAVF+R+P+ RFLS FRSKCE GHD D  HC+ TFG + P F+ A+ R+    P + D H+RPQ++FCGGL + L+H+  V +L  P        ALLH +GV   ++P F++ FP                             P+S           + A+++           A    G V N  H   THA  +L  YY   AM   + ++Y  DY LFG+
Sbjct:   68 KVGCESFNDLFRSYRSRWD---PRQAKGRKPWRLNNMKAHNMSEADVDRLVLDETWHKAVFFREPLERFLSAFRSKCEPGHDTDREHCTDTFGSKDPPFAVAIDRLRQAPP-ITDAHWRPQSDFCGGLPSKLSHFQTVEQLD-PATSHEKVSALLHTLGVQPESIPAFHRHFP----------------------------RPAS-----------SVADSSGTXXXXXXXXGAKQKAGAVPNETH--LTHAADALRKYYLSPAMACAVVQYYIDDYLLFGI 303          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835YYQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.100e-32
Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 3
Query:  291 QVGALTFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSEL 713
            +VG  +FN LF +L+ ++D  +       GVW SN      +  +D++A + +P W KAVFYR+P+VRFLS FRSKCE  HD D  HC+ TFG   P F+AAV R++  +P + D H+R Q  FCGGL++ L H+  V +L
Sbjct:   68 KVGCKSFNQLFKSLRARYDPTQ----AAAGVWGSNNMTAHNLTEADIDAYVEDPLWHKAVFYREPLVRFLSAFRSKCEPHHDGDRQHCTATFGSEQPPFAAAVDRLSQQQP-ITDAHWRRQIHFCGGLQSKLVHFQTVEQL 203          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835YPV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV5_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.180e-29
Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  306 TFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNELT-VPGFNQLFP 809
            +FN LF +L+ ++D       EG  +W  N      M    L   + +  W KAVFYR+P+VR+LS +RSKCE GHD+ +  C+  FG+  P+F+ AV R+   +P V++ HFRPQ +FCGGL   L  +  V  L  P   R    ALL  VGV +   VP FN+ FP
Sbjct:    9 SFNHLFTSLRSRYD---ESLLEG-DIWGRNDMHSHNMTLPQLADLVYDDTWHKAVFYREPLVRYLSAYRSKCEVGHDDGFELCTALFGKPNPTFAEAVERLT-QDPPVDNPHFRPQVDFCGGLGAILPQFQTVEALD-PRTSRDAVAALLRRVGVADPEGVPAFNERFP 171          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835YXU8_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.800e-23
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 3
Query:  303 LTFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNEL-TVPGFNQLFP 809
            L+FN LF +L+ ++D +    AEG      N+     M    L   + +PAW KAVFYR+P+VRF+S FRSKC          C   FG ++P F+  V R+A   P V + H+RPQA+FCGGL   L+ +  +  L      R     LL  VG+ +  ++P FN+ FP
Sbjct:  124 LSFNDLFRSLRERYDPSL---AEGPNFG-RNSYTNHNMTLEQLTEYVYDPAWHKAVFYREPLVRFVSAFRSKCVREPHAGNGVCQAEFGRKYPQFTEVVGRLARGPP-VSNPHWRPQADFCGGLSGMLSEFQTIEPLDA-RTSREKVAKLLKQVGIEDPESIPAFNERFP 287          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835Z0T9_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.970e-22
Identity = 65/179 (36.31%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  303 LTFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNEL-TVPGFNQLFPLLPPPEEPE 836
            L+FN LF +L+ ++D +    AEG      N+     M    L   + +P W KAVFYR+P+VRF+S +RSKC          C   FG + P F + V R+   EP +E+ H+RPQA+FCGGL   L+ +  +  L      R     LL  VG+ +  ++P FN+ FP    P +PE
Sbjct:   70 LSFNDLFRSLRERYDPSL---AEGPSFG-RNSYTNHNMTLEQLTEYIYDPTWHKAVFYREPLVRFVSAYRSKCVREKHAGNEVCQSQFGIKHPLFKSVVKRLT-REPPIENPHWRPQADFCGGLSGILSEFQTIEPLDA-RTSREKVAKLLKQVGIEDPESIPAFNERFP----PPDPE 238          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835Z7D4_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7D4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.500e-22
Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = 3
Query:  288 SQVGALTFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCS-ITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNELTVPGFNQLFPLL 815
            ++V +  FN LF +L+ ++D    Q AEG+  +  N      M  S +   + NP+W KAVFYR+P+VRFLS ++SKCE G   D S C+ +      P F   V R+    PR+ + H+RPQ +FCGGL   +     V  L    + RA+   LL  VGV+   VP F   FP L
Sbjct:  140 AKVNSAAFNQLFRSLRSRYD---PQMAEGKVAFGLNNYLYHNMTVSQVAELVHNPSWHKAVFYREPLVRFLSAWKSKCEKGVIRDLSMCADVLHMSVAPDFPQIVERLW-QSPRIVNPHWRPQVDFCGGLTGIIDQIQTVKRLDLTTS-RAEVSELLQQVGVDPADVPMFETRFPPL 311          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A836CJZ7_9STRA (Sulfotransferase family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.120e-21
Identity = 71/204 (34.80%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  288 SQVGALTFNSLFANLQFQFDLAKNQ-KAEGRGVWFS-NTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKC--------------------------EAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVS--ELTTPEAMRADTVALLHAVGVNELTVPGFNQLFP 809
            ++V +L+FN L  +L+  FD    + +A GR + F  N+         DL  AL +PAW KAVFYR+P+ RF+S +R KC                          +A H  D   C  +FGE WPSF   V R+ + EPRV D H+R Q EFCGGL+  +  + FV   E  T      + +A  H    N      FN  FP
Sbjct:  100 AKVSSLSFNDLLRSLRAPFDPGMLEGEAYGRIIPFGRNSYRSHNWSLQDLTDALHDPAWLKAVFYREPLTRFVSAYRDKCGKRTHGARGLPPRNRRRRAWSPLHERKANHKHD-KICLRSFGEDWPSFETVVDRL-LREPRVTDPHWRRQHEFCGGLDRFIGEFQFVEVLERATSREKVGELLARAHVPNFNSDAA--FNLRFP 299          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835Z974_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z974_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.690e-20
Identity = 75/230 (32.61%), Postives = 107/230 (46.52%), Query Frame = 3
Query:  288 SQVGALTFNSLFANLQFQFDLAKNQK-----------AEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFG-ERWPSFSAAVARM--AVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNELTVPGFNQ------------------LFPLLPPPEEPEPDDVPPSRHVRRLVD 881
            ++  +L FN LF +L+ + D + N             A+    +  NT A   +   +L   + +P+W KAVFYR+P+VRF+S +RSKC+    ED   C   FG  + P FSA   R+  A   P   + H+RPQ EFCGGL  TLA Y  V  L   ++ R +   LL  +GV +   P FN+                  +F L  PP +  PD  P + H     D
Sbjct:  242 AKCNSLAFNDLFRSLRERHDPSMNTPESXXXXXXXXMADDSVKFGRNTYAYHNLSLEELTDRVYDPSWHKAVFYREPLVRFVSAYRSKCDRDSQEDGVLCKRVFGLGKHPRFSAVTQRLSDAAAHPIDANPHWRPQTEFCGGLAETLAEYQTVEALDARDS-RENVAKLLSDIGVAD--PPNFNKXXXXXXXXXXXXXXESIPVFNLHFPPPDAGPDAGPHNHHATHADD 468          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A835Z3G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.970e-20
Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  291 QVGALTFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEA 728
            +V  L FN LF +L+ ++D +     EG   W   +  +  ++   L   + +P W KAVFYR+P+ RFLS +RSKCE+GHD+    C   FG+  P+F  AV R+ V +P + + H+RPQ +FC GL    + +  ++ +T  ++
Sbjct:   40 EVNCLAFNKLFNSLRSRYDPSL---LEGP-AWNRTSHVQHRIKLKTLTRMIYDPTWHKAVFYREPLARFLSAYRSKCESGHDDGAELCEQEFGKPNPTFEEAVERL-VTQPYIWNPHWRPQVDFCSGLSAITSQFLALNAITDAQS 180          
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Match: A0A836CJ81_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ81_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.510e-18
Identity = 68/196 (34.69%), Postives = 100/196 (51.02%), Query Frame = 3
Query:  288 SQVGALTFNSLFANLQFQFDLAKNQKAE-GRGVWFS-NTPAKFGMERSDLEAALVNPAWTKAVFYRDPVVRFLSGFRSKCEA---GHDE--DWS------------HCSITFGERWPSFSAAVARMAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALLHAVGVNELTV---PGFNQLFP 809
            ++V ++ FN LF +L+  FD +  +    GR + F  N+ A       +L  A+ +  W KAVFYR+P+ RF+S ++ KCE    G+ +   WS             CS  FG+R P+F+  V R+   +PR+E+ H+RPQ EFCG L   +  ++FV EL      R   V LL A  V +L       FN  FP
Sbjct:   52 AKVSSVAFNDLFRSLRAPFDPSMLEGTRFGRIIPFGRNSYASHNWSLQNLTQAVNDRDWVKAVFYREPLTRFVSAYKEKCERRPPGNRQLLGWSPLALPPRPPGSSFCSRIFGQRHPTFTEVVERLQ-QQPRIENAHWRPQHEFCG-LRNIIQEFNFV-ELLDRRTSREKVVELLSAARVPDLKFMNDTAFNAHFP 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11843.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835Z948_9STRA1.450e-3632.62Sulfotransferase family-domain-containing protein ... [more]
A0A835YYQ7_9STRA1.100e-3244.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPV5_9STRA3.180e-2940.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXU8_9STRA9.800e-2337.65Sulfotransferase family-domain-containing protein ... [more]
A0A835Z0T9_9STRA1.970e-2236.31Sulfotransferase family-domain-containing protein ... [more]
A0A835Z7D4_9STRA2.500e-2237.85Sulfotransferase family-domain-containing protein ... [more]
A0A836CJZ7_9STRA9.120e-2134.80Sulfotransferase family-domain-containing protein ... [more]
A0A835Z974_9STRA1.690e-2032.61Sulfotransferase family-domain-containing protein ... [more]
A0A835Z3G3_9STRA2.970e-2035.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJ81_9STRA5.510e-1834.69Sulfotransferase family-domain-containing protein ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11843contigP-wetherbeei_contig11843:281..1818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1284
Hectar predicted targeting categoryother localisation
Exons3
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.1785998-UTR-P-wetherbeei_contig11843:280..2851683185928.1785998-UTR-P-wetherbeei_contig11843:280..285Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11843 281..285 +
1683185928.225933-UTR-P-wetherbeei_contig11843:1697..18181683185928.225933-UTR-P-wetherbeei_contig11843:1697..1818Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11843 1698..1818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.190276-CDS-P-wetherbeei_contig11843:285..3361683185928.190276-CDS-P-wetherbeei_contig11843:285..336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11843 286..336 +
1683185928.2021432-CDS-P-wetherbeei_contig11843:435..8431683185928.2021432-CDS-P-wetherbeei_contig11843:435..843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11843 436..843 +
1683185928.2140193-CDS-P-wetherbeei_contig11843:998..16971683185928.2140193-CDS-P-wetherbeei_contig11843:998..1697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11843 999..1697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11843.1.2prot_P-wetherbeei_contig11843.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11843 286..1697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11843.1.2

>prot_P-wetherbeei_contig11843.1.2 ID=prot_P-wetherbeei_contig11843.1.2|Name=mRNA_P-wetherbeei_contig11843.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=386bp
MPQLTDTLLDRFIVIPEVKLLFCYIEKVKRQRATFAAPYDRMTHQKRKLP
MLPPILREWRTATHGACLLSLAVSFFPQPGCVNCHLNPCALMPFSQVGAL
TFNSLFANLQFQFDLAKNQKAEGRGVWFSNTPAKFGMERSDLEAALVNPA
WTKAVFYRDPVVRFLSGFRSKCEAGHDEDWSHCSITFGERWPSFSAAVAR
MAVPEPRVEDEHFRPQAEFCGGLETTLAHYDFVSELTTPEAMRADTVALL
HAVGVNELTVPGFNQLFPLLPPPEEPEPDDVPPSRHVRRLVDFALFSPSS
PAPQFSRALTATEAEATSAEITATTEPAAAPLVGVVRNSVHEHATHAKAS
LCNYYTDAAMVLVIEEFYRRDYDLFGMTPVDICGF*
back to top

mRNA from alignment at P-wetherbeei_contig11843:281..1818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11843.1.2 ID=mRNA_P-wetherbeei_contig11843.1.2|Name=mRNA_P-wetherbeei_contig11843.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1538bp|location=Sequence derived from alignment at P-wetherbeei_contig11843:281..1818+ (Phaeothamnion wetherbeei SAG_119_79)
ACACAATGCCGCAGCTTACGGACACCCTCCTTGACCGCTTCATTGTTATC CCGGAGGTAAGACTGCTTGTCTCTAACGGTATAGAAAACACATCATCCGT TCGCTCACGTTGCCCCATTCTTTTCATTTGTAATAAATAAAACGGAAACC TACAGGTGAAGCTGCTCTTCTGTTATATCGAAAAGGTAAAAAGACAACGA GCCACGTTTGCGGCACCTTATGACAGAATGACCCATCAGAAGCGAAAGCT GCCCATGTTGCCGCCGATCTTAAGAGAATGGCGTACAGCAACGCACGGCG CATGCTTGCTTTCCCTGGCGGTGTCCTTTTTCCCTCAACCCGGCTGTGTA AATTGTCACCTCAACCCGTGCGCACTCATGCCTTTTTCGCAGGTTGGGGC GTTGACCTTCAACTCCCTCTTCGCAAACCTTCAGTTCCAATTCGATCTTG CGAAAAACCAAAAGGCGGAGGGGCGGGGTGTATGGTTCTCGAACACGCCC GCCAAGTTCGGGATGGAGCGATCCGATCTCGAGGCAGCGCTGGTGAATCC CGCATGGACCAAGGTGCTTACATTGGAGCAGTAGGAGAAAAGAGACTTGA TCCATTTTGCGCCGCCAATTTGCCAAGATAAAGCTGTTGCGCGCTCCTCC TTCTCGCACTTTCTGGCCCAGAGTTTCCCACACGCCCTCCCTTTTCGTGC ACTACCTCTTTGGCGCAGGCGGTGTTTTACCGGGATCCGGTAGTAAGATT CCTTTCCGGCTTCCGCTCCAAGTGCGAGGCGGGTCATGACGAAGACTGGT CTCACTGCAGCATCACGTTCGGCGAACGTTGGCCGTCTTTTTCGGCGGCC GTGGCGCGCATGGCAGTCCCGGAGCCAAGGGTGGAGGATGAGCATTTCCG GCCACAGGCTGAATTCTGCGGGGGGCTCGAGACGACGCTGGCGCATTATG ACTTTGTGTCGGAACTGACAACGCCGGAAGCGATGCGAGCGGACACCGTG GCGCTGCTGCACGCGGTCGGCGTGAACGAGCTGACTGTGCCCGGCTTCAA CCAGCTGTTCCCGCTCCTGCCGCCGCCGGAAGAGCCAGAACCTGACGATG TCCCGCCATCACGTCACGTTCGCCGGCTGGTCGACTTTGCGCTGTTCTCG CCATCCTCGCCGGCGCCGCAATTCTCGCGTGCGCTCACAGCAACTGAGGC GGAAGCGACGTCGGCGGAGATTACAGCGACGACAGAGCCGGCTGCGGCGC CACTTGTCGGTGTAGTGAGAAACAGCGTGCATGAGCACGCGACCCATGCC AAGGCATCCCTCTGCAACTATTACACGGACGCCGCTATGGTATTGGTTAT TGAGGAGTTCTACCGCCGGGACTATGATCTCTTCGGCATGACGCCGGTAG ATATTTGTGGATTCTAGGGTACATGCCGTGGTCTGCATTCAGTTTTTTGT TCGCTACGGCTTGAAGTACGTGCGCGTTTCCAGAGCCCGCACGGAAAACT CTTTGGAAAGGAAGGTCAATAAAAAAGTTAGTACTGAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11843:281..1818+

>mRNA_P-wetherbeei_contig11843.1.2 ID=mRNA_P-wetherbeei_contig11843.1.2|Name=mRNA_P-wetherbeei_contig11843.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig11843:281..1818+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCAGCTTACGGACACCCTCCTTGACCGCTTCATTGTTATCCCGGA
GGTGAAGCTGCTCTTCTGTTATATCGAAAAGGTAAAAAGACAACGAGCCA
CGTTTGCGGCACCTTATGACAGAATGACCCATCAGAAGCGAAAGCTGCCC
ATGTTGCCGCCGATCTTAAGAGAATGGCGTACAGCAACGCACGGCGCATG
CTTGCTTTCCCTGGCGGTGTCCTTTTTCCCTCAACCCGGCTGTGTAAATT
GTCACCTCAACCCGTGCGCACTCATGCCTTTTTCGCAGGTTGGGGCGTTG
ACCTTCAACTCCCTCTTCGCAAACCTTCAGTTCCAATTCGATCTTGCGAA
AAACCAAAAGGCGGAGGGGCGGGGTGTATGGTTCTCGAACACGCCCGCCA
AGTTCGGGATGGAGCGATCCGATCTCGAGGCAGCGCTGGTGAATCCCGCA
TGGACCAAGGCGGTGTTTTACCGGGATCCGGTAGTAAGATTCCTTTCCGG
CTTCCGCTCCAAGTGCGAGGCGGGTCATGACGAAGACTGGTCTCACTGCA
GCATCACGTTCGGCGAACGTTGGCCGTCTTTTTCGGCGGCCGTGGCGCGC
ATGGCAGTCCCGGAGCCAAGGGTGGAGGATGAGCATTTCCGGCCACAGGC
TGAATTCTGCGGGGGGCTCGAGACGACGCTGGCGCATTATGACTTTGTGT
CGGAACTGACAACGCCGGAAGCGATGCGAGCGGACACCGTGGCGCTGCTG
CACGCGGTCGGCGTGAACGAGCTGACTGTGCCCGGCTTCAACCAGCTGTT
CCCGCTCCTGCCGCCGCCGGAAGAGCCAGAACCTGACGATGTCCCGCCAT
CACGTCACGTTCGCCGGCTGGTCGACTTTGCGCTGTTCTCGCCATCCTCG
CCGGCGCCGCAATTCTCGCGTGCGCTCACAGCAACTGAGGCGGAAGCGAC
GTCGGCGGAGATTACAGCGACGACAGAGCCGGCTGCGGCGCCACTTGTCG
GTGTAGTGAGAAACAGCGTGCATGAGCACGCGACCCATGCCAAGGCATCC
CTCTGCAACTATTACACGGACGCCGCTATGGTATTGGTTATTGAGGAGTT
CTACCGCCGGGACTATGATCTCTTCGGCATGACGCCGGTAGATATTTGTG
GATTCTAG
back to top