mRNA_P-wetherbeei_contig11837.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11837.1.1
Unique NamemRNA_P-wetherbeei_contig11837.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11837.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11837contigP-wetherbeei_contig11837:218..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009038045.1
Preferred nameBRF1
PFAMsBRF1,TFIIB,TF_Zn_Ribbon
Model size227
Max annot lvl2759|Eukaryota
KEGG koko:K15196
Hectar predicted targeting categoryother localisation
GOsGO:0000126,GO:0000976,GO:0000992,GO:0000994,GO:0000995,GO:0001006,GO:0001016,GO:0001025,GO:0001032,GO:0001067,GO:0001112,GO:0001120,GO:0001156,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032091,GO:0032196,GO:0032774,GO:0032991,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043487,GO:0043488,GO:0043496,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045945,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070063,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090074,GO:0090304,GO:0090576,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Exons2
Evalue0.000997
EggNOG OGsCOG1405@1|root,KOG1598@2759|Eukaryota
DescriptionRNA polymerase III type 3 promoter DNA binding
Cds size225
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.8812726-CDS-P-wetherbeei_contig11837:217..2981683185927.8812726-CDS-P-wetherbeei_contig11837:217..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11837 218..298 -
1683185927.8899658-CDS-P-wetherbeei_contig11837:462..6061683185927.8899658-CDS-P-wetherbeei_contig11837:462..606Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11837 463..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11837.1.1prot_P-wetherbeei_contig11837.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11837 218..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11837.1.1

>prot_P-wetherbeei_contig11837.1.1 ID=prot_P-wetherbeei_contig11837.1.1|Name=mRNA_P-wetherbeei_contig11837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
DDDALSEINEEEAAHYILTDEEIIAKDTFWAKDNADYLVQKAEKDHLAAK
TKASMGGSSADGKGGGGEEDKRKRG
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mRNA from alignment at P-wetherbeei_contig11837:218..606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11837.1.1 ID=mRNA_P-wetherbeei_contig11837.1.1|Name=mRNA_P-wetherbeei_contig11837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=389bp|location=Sequence derived from alignment at P-wetherbeei_contig11837:218..606- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGATGCTCTGAGCGAGATTAACGAGGAGGAAGCCGCCCACTACAT
CCTGACGGACGAGGAGATCATCGCGAAGGACACCTTCTGGGCGAAGGACA
ACGCGGACTACCTCGTCCAGAAGGCTGAAAAGGACCATCTAGCGGTAAGA
GAAGGGGACCGCACGCTTGAATCGTCTCGGAATGGTTGGAGAGGTACTGT
GCTGACGTCTTCCGTATTGAATGAGGTGAAGTTCTTATACCTGTTAGATG
TTGTAGTATAAAGACAGCAAACGCTCTTGCAAACTGGACTGCTTTGAATC
CGTTGCAGGCCAAGACCAAGGCGAGCATGGGCGGAAGCAGTGCCGACGGC
AAAGGCGGCGGCGGTGAAGAGGACAAGCGGAAGCGGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11837:218..606-

>mRNA_P-wetherbeei_contig11837.1.1 ID=mRNA_P-wetherbeei_contig11837.1.1|Name=mRNA_P-wetherbeei_contig11837.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig11837:218..606- (Phaeothamnion wetherbeei SAG_119_79)
GACGACGATGCTCTGAGCGAGATTAACGAGGAGGAAGCCGCCCACTACAT
CCTGACGGACGAGGAGATCATCGCGAAGGACACCTTCTGGGCGAAGGACA
ACGCGGACTACCTCGTCCAGAAGGCTGAAAAGGACCATCTAGCGGCCAAG
ACCAAGGCGAGCATGGGCGGAAGCAGTGCCGACGGCAAAGGCGGCGGCGG
TGAAGAGGACAAGCGGAAGCGGGGG
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