mRNA_P-wetherbeei_contig11831.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11831.1.1
Unique NamemRNA_P-wetherbeei_contig11831.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A4Q3V8E3_9BURK (PhoD domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A4Q3V8E3_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 9.530e-16
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA 162
            KFVNRQRGYMVCDVTPER ETS   LDKVSV DGKL+ R  L V +GSN ++ A
Sbjct:  193 KFVNRQRGYMVCDVTPERSETSAMSLDKVSVADGKLTKRATLTVPRGSNTLSVA 246
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A2D7ZP22_9CAUL (PhoD domain-containing protein n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A2D7ZP22_9CAUL)

HSP 1 Score: 68.9 bits (167), Expect = 2.070e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA 162
            KF N QRGY++C+VTPER+E + R++DKVS P G +STR KLAV  G  VV  A
Sbjct:   94 KFNNSQRGYLLCEVTPERFEAAFRVIDKVSAPGGTVSTRAKLAVPAGEAVVVPA 147
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A7W6JEW5_9CAUL (Alkaline phosphatase D n=1 Tax=Brevundimonas lenta TaxID=424796 RepID=A0A7W6JEW5_9CAUL)

HSP 1 Score: 72.0 bits (175), Expect = 2.290e-13
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA 162
            KF N QRGY+VCDVTPERW+T  ++LDKVS   G L+TR KLAVA G   + AA
Sbjct:  470 KFNNAQRGYVVCDVTPERWQTEFKVLDKVSERGGTLTTRAKLAVASGDARIVAA 523
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A7X6BNM9_9CAUL (Alkaline phosphatase D n=1 Tax=Brevundimonas alba TaxID=74314 RepID=A0A7X6BNM9_9CAUL)

HSP 1 Score: 71.2 bits (173), Expect = 4.280e-13
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQG 141
            KF N QRGY+VCDVTPERW+T  ++LDKVS  DG L+TR  LAVA G
Sbjct:  470 KFNNAQRGYVVCDVTPERWQTEFKVLDKVSEKDGTLTTRATLAVASG 516
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A519L146_9CAUL (Alkaline phosphatase (Fragment) n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519L146_9CAUL)

HSP 1 Score: 68.9 bits (167), Expect = 6.000e-13
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA 162
            KF N QRGY VCDVTP+ W T  ++LDKVS P G LSTR   AV +GS+ V AA
Sbjct:  150 KFNNAQRGYAVCDVTPDTWRTEFKVLDKVSEPGGTLSTRATYAVERGSSRVVAA 203
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: UPI001411BA24 (alkaline phosphatase D family protein n=1 Tax=Rhizobium sp. CRIBSB TaxID=2683264 RepID=UPI001411BA24)

HSP 1 Score: 70.5 bits (171), Expect = 7.900e-13
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQG 141
            KF N QRGY+VCDVTPERW+T  ++LDKVS   G L+TR KLAVA G
Sbjct:  406 KFNNAQRGYVVCDVTPERWQTEFKVLDKVSERGGTLTTRAKLAVASG 452
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A519QLW7_9CAUL (Alkaline phosphatase n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519QLW7_9CAUL)

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-13
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA 162
            KF N QRGY VCDVTPE W T+ ++LDKVS P G LSTR   AV +GS+ V AA
Sbjct:  465 KFNNAQRGYAVCDVTPETWRTAFKVLDKVSEPGGTLSTRATYAVERGSSRVVAA 518
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: UPI001C6308CE (alkaline phosphatase D family protein n=1 Tax=Brevundimonas sp. PAMC22021 TaxID=2861285 RepID=UPI001C6308CE)

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-13
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQG 141
            KF+N QRGY+VCDVT ERW+T  ++LDKVS  DG LSTR  LA+A G
Sbjct:  467 KFINSQRGYVVCDVTAERWQTEFKVLDKVSEKDGVLSTRKTLAIASG 513
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BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: A0A7W8HYL2_9CAUL (Alkaline phosphatase D n=1 Tax=Brevundimonas basaltis TaxID=472166 RepID=A0A7W8HYL2_9CAUL)

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-13
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQG 141
            KF N QRGY+VCDVTPERW+T  ++LDKVS   G LSTR K AVA G
Sbjct:  469 KFNNAQRGYVVCDVTPERWQTEFKVLDKVSEKGGTLSTRAKFAVANG 515
[Close]
BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Match: UPI00083327AF (alkaline phosphatase D family protein n=1 Tax=Sphingomonas sp. CCH10-B3 TaxID=1768757 RepID=UPI00083327AF)

HSP 1 Score: 70.5 bits (171), Expect = 8.010e-13
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 KFVNRQRGYMVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA 162
            KF N QRGY+VCDVT ERW++  R+LDK+S P G L+TR KLAVA G   + AA
Sbjct:  478 KFNNAQRGYVVCDVTRERWQSEFRVLDKISAPGGVLTTRIKLAVAAGEPKLVAA 531
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11831.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q3V8E3_9BURK9.530e-1670.37PhoD domain-containing protein n=1 Tax=Burkholderi... [more]
A0A2D7ZP22_9CAUL2.070e-1359.26PhoD domain-containing protein n=1 Tax=Phenylobact... [more]
A0A7W6JEW5_9CAUL2.290e-1362.96Alkaline phosphatase D n=1 Tax=Brevundimonas lenta... [more]
A0A7X6BNM9_9CAUL4.280e-1368.09Alkaline phosphatase D n=1 Tax=Brevundimonas alba ... [more]
A0A519L146_9CAUL6.000e-1361.11Alkaline phosphatase (Fragment) n=1 Tax=Brevundimo... [more]
UPI001411BA247.900e-1368.09alkaline phosphatase D family protein n=1 Tax=Rhiz... [more]
A0A519QLW7_9CAUL8.000e-1362.96Alkaline phosphatase n=1 Tax=Brevundimonas sp. Tax... [more]
UPI001C6308CE8.000e-1365.96alkaline phosphatase D family protein n=1 Tax=Brev... [more]
A0A7W8HYL2_9CAUL8.000e-1368.09Alkaline phosphatase D n=1 Tax=Brevundimonas basal... [more]
UPI00083327AF8.010e-1361.11alkaline phosphatase D family protein n=1 Tax=Sphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11831contigP-wetherbeei_contig11831:2..166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1331060.RLDS_10440
PFAMsPhoD,PhoD_N
Model size165
Max annot lvl204457|Sphingomonadales
KEGG rclassRC00017
KEGG koko:K01113
KEGG ReactionR04620
KEGG Pathwayko00790,ko01100,ko02020,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.93e-07
EggNOG OGsCOG3540@1|root,COG3540@2|Bacteria,1MWAF@1224|Proteobacteria,2TS7J@28211|Alphaproteobacteria,2K1BX@204457|Sphingomonadales
EC3.1.3.1
DescriptionAlkaline phosphatase
Cds size138
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.7333014-UTR-P-wetherbeei_contig11831:1..281683185927.7333014-UTR-P-wetherbeei_contig11831:1..28Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11831 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.7482793-CDS-P-wetherbeei_contig11831:28..1661683185927.7482793-CDS-P-wetherbeei_contig11831:28..166Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11831 29..166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11831.1.1prot_P-wetherbeei_contig11831.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11831 29..166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11831.1.1

>prot_P-wetherbeei_contig11831.1.1 ID=prot_P-wetherbeei_contig11831.1.1|Name=mRNA_P-wetherbeei_contig11831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
MVCDVTPERWETSVRILDKVSVPDGKLSTRTKLAVAQGSNVVTAA*
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mRNA from alignment at P-wetherbeei_contig11831:2..166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11831.1.1 ID=mRNA_P-wetherbeei_contig11831.1.1|Name=mRNA_P-wetherbeei_contig11831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig11831:2..166+ (Phaeothamnion wetherbeei SAG_119_79)
AAGTTCGTCAACCGGCAGCGGGGCTATATGGTCTGCGATGTGACGCCGGA
GCGTTGGGAAACATCCGTCCGCATTCTGGACAAGGTCTCGGTCCCTGACG
GCAAGCTCTCGACGCGCACCAAGCTGGCGGTCGCGCAGGGATCGAATGTG
GTGACGGCTGCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11831:2..166+

>mRNA_P-wetherbeei_contig11831.1.1 ID=mRNA_P-wetherbeei_contig11831.1.1|Name=mRNA_P-wetherbeei_contig11831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig11831:2..166+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTGCGATGTGACGCCGGAGCGTTGGGAAACATCCGTCCGCATTCT
GGACAAGGTCTCGGTCCCTGACGGCAAGCTCTCGACGCGCACCAAGCTGG
CGGTCGCGCAGGGATCGAATGTGGTGACGGCTGCCTAG
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