prot_P-wetherbeei_contig1174.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1174.3.1
Unique Nameprot_P-wetherbeei_contig1174.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length443
Homology
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA)

HSP 1 Score: 273 bits (698), Expect = 3.950e-84
Identity = 148/318 (46.54%), Postives = 209/318 (65.72%), Query Frame = 0
Query:  114 HFDETPDLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGA---EGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSK-LPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGR-AMTLKQVGERFNVTRERIRQIEARALHKLR 426
            HF + P+LLT ++E+ L +LVQ+RI W+  R +L +  G+ P+L EW+ A G  GG    E   ++VA  D+AK  M+SANLRLV+S+AR++K S  S+ LPL DL+QEG  GLVKAVE++DP++GFRFSTYA+WW+RQT+ RA+ +  RTIRLP+H+HD L  ++R GR L  ELGR A+  ELA R+ +  E+L +      +EP+SLS   G                   + T+G+ V D   +P+++     +++DV+ LL  L+PRE+ VLRMRYGLD G  + TL+ +G    VTRER+RQIE RAL +LR
Sbjct:   88 HFRQAPELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARKHKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSGLRPDKQSL-------TSTVGDSVHDTNPTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYGLDSGGISETLEAIGVSIGVTRERVRQIERRALDRLR 398          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 274 bits (700), Expect = 1.800e-83
Identity = 150/344 (43.60%), Postives = 224/344 (65.12%), Query Frame = 0
Query:   98 PTSQGRKAARMAGKQGHFDET---PDLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHS 438
            P++    A   + + G F ++     LL A++E+ L + VQ  IGW+  R  L+  LGRPP+LEEW+ + G+    + +RR++ R  +AK+ M+S+NLRLV+SIA+RY+   +  L L DLIQEG+ GLV+AVE+FDP+KGF+FSTY++WW++Q ++RAIA+QSRTIRLP H+HDLL+ +++  REL   LGR  T  ELA RM++  E+L +  E  R         V                     + +G+ + D G  P   TE  +L++D+E+L+  LSPRE+ V+RMR+GLD  +  TL+++G  F+VTRER+RQIEARALHKLRQP+ +  +R+++
Sbjct:  146 PSTAASAAGSSSNELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQ--PDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQ---KRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRP-------AVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREYA 477          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 273 bits (698), Expect = 4.090e-83
Identity = 160/324 (49.38%), Postives = 227/324 (70.06%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTT--VGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVEV 441
            DLLTAQ+E+ L + VQ  + W+  R +LE  L RPP+  EW+ A G+D   + ++R++ R+  AK  M+ +NLRLV+SIA+RY  S  + L + DL QEG+ GLVKAVE+FDP++GFRFSTYA+WW++Q+VMRAIA+QSRTIRLP H+HD L+ +R+  REL  +LGR  T  E+A    +  ++L +  +  R E +S      VGG  XXXXXXXXX       ++ + + +TD    P++     L++DD++RLL  LS RE+ V+RMR+GLDDG+A TL+++G+RF VTRERIRQIEARALHKLRQP+ +  ++Q+  E+
Sbjct:  185 DLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVD--TKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYT-SRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSR-ETMSFEQEIRVGGAGXXXXXXXXX-------TVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQYVNEM 497          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S2KJI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 5.850e-83
Identity = 155/374 (41.44%), Postives = 229/374 (61.23%), Query Frame = 0
Query:   75 AQQRKQPVLGNAAIPSTSWDSERPTSQGRKAARMAGKQG-----HFDETP---DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 440
            A   K+ ++    +     D+++  +  R       + G     H+ +T    DLL  ++E+ L + +Q  I W+  R +LE+ L RPP+  EW+ A  LD    G++R++ R+  AK  ++ +NLRLV+SIA+RY   V   +   DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q +MRAIA+QSR IRLP HVHD L+ +RR  +EL   LGR  T  E+A +  +  ++L++ + K +   +S+ T +                      T+G+ + D+G +P D     +L+DDV R+L  LSPRE+AV+RMR+GLDDG+A TL+++G RF+VTRERIRQIEARALHKLRQP+     R HSV+
Sbjct:   48 ADANKEKMISERQLGGAKKDAKQMNNYARSVRATINESGEESISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLD--VPGLKRQIRRSQRAKAALIESNLRLVVSIAKRY---VNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTF-LRKAQQGTISIETPMN--MGAGKGSSSGGGSMGQNDKTMGDLLRDSGPAPVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPY-----RNHSVK 408          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 267 bits (682), Expect = 5.240e-82
Identity = 145/321 (45.17%), Postives = 217/321 (67.60%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 440
            DLL  ++E+ LG+ +Q  + W+  + +L   L R PS  EW+   G+D   + ++  + R+  AK  M+SANLRL +SIA+RYK      L L DL+QEG+FGL+KA ERFDPDKGF+FSTYA+WW++Q++MRAIA+QSRTIRLP HVHDLL+ I+RA REL  ELGR  T  EL+ R+ +  +++ +Y E  R+  +S+  ++                   + +T+ + + D    P+D T++ +L++++ +LL  LSPRE+ V+R+R+GLDDGRA TL+++G+ F VTRER+RQIE+RAL KLRQP+ +  +R ++ E
Sbjct:   69 DLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVD--EDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYK---HRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSV-LSMEQSLNNARKGSAASLGGK-----SDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7R9ZH78_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH78_9STRA)

HSP 1 Score: 267 bits (683), Expect = 2.340e-81
Identity = 149/327 (45.57%), Postives = 211/327 (64.53%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLST------TVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 440
            DLL   +EI L + +Q  + W+ +R  LEA L RPP+  EW++          M+R++ R+  AK  +  +NLRLV+SIA+RY+      L   DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q++MRAIA+Q RTIRLP H+HD L+ IR+  R+L  ELGR  +  E+AGR+D+  E++ + ++K     +S+ T      T G                     T+G+ V D  Q+P D  E  +L+DD++RL+  L+ RE+AV+RMR+GLDDG+A TL+++G RF+VTRERIRQIEARALHKLRQP+     R HSV+
Sbjct:  136 DLLKKNEEIILAREIQILVAWEKKREDLEANLMRPPTYAEWAEDIREGMTVPEMKRQIRRSLRAKSALTESNLRLVISIAKRYQ---NRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLNVIRKVERDLSNELGREPSNEEVAGRVDLKPEKVEF-LKKVSKHSLSMETQLNSSKTKGSGAGTGGSKGTGGASSSERQFTLGDTVKDPKQAPMDMAEYGMLRDDMKRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPY-----RNHSVK 453          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: B8C130_THAPS (RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C130_THAPS)

HSP 1 Score: 261 bits (667), Expect = 8.780e-81
Identity = 144/322 (44.72%), Postives = 214/322 (66.46%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVEV 441
            DLL   +EI L + +Q  I W+  R +LE  L RPP+ +EW+ A         +++++ R+  AK  +  +NLRLV+SIA+RY+      L + DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q +MRAIA+Q+RTIRLP H+HD L  +R+A R+LQ ELGR AT  E+A ++ M  +++ + +++     +S+   +G                   S TI + + D  Q P D  + R+LQDDV RL+  L+ RE+AV+RMR+GLDDG+A TL+++G++F+VTRERIRQIEARALHKLRQP+ + +V+ ++ E+
Sbjct:   14 DLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEPGMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQ---GRGLNMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIHDQLSIVRKAERDLQNELGRDATKEEVAAKVGMKPDKIEF-LKRASVGSISMEQELG-------------TSGSERSFTIQDTLGDPDQKPVDMAQYRMLQDDVGRLICTLNAREQAVIRMRFGLDDGKAKTLEEIGKKFSVTRERIRQIEARALHKLRQPYRNHTVKCYANEL 318          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 259 bits (663), Expect = 7.830e-80
Identity = 145/321 (45.17%), Postives = 215/321 (66.98%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 440
            DLL  ++EI L + ++  I W+  R +L   L R PSL EW+   G+D   + ++  + R+  AK  M+SANLRL +SIA+RY+   +  L L DLIQEG+FGL+KA ERFDP+KGF+FSTYA+WW++Q++MRAIA+QSRTIRLP HVHD L+ ++RA REL  ELGR  T  ELA R+ +  +++ +Y  +D A+ V    ++                   + +T+ + + D    P+D T+  +L++++ +LL  LSPRE+ V+R+R+GLDDGRA TL+++G+ F VTRER+RQIE+RAL KLRQP+ +  +R ++ E
Sbjct:   28 DLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVD--EDTLKLIMIRSARAKSTMISANLRLAVSIAKRYR---RRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFY--RDAAQSV---LSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A7S4VUL7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUL7_9STRA)

HSP 1 Score: 262 bits (669), Expect = 8.320e-79
Identity = 155/324 (47.84%), Postives = 221/324 (68.21%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSL------STTVGGXXXXXXXXXXXXXXXXXTSLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQH 437
            +LL   +EI LG+ +Q  + W+ +R  LEA L RPP+  EW+ +   D     M+R++ R+  AK  +  +NLRLV+SIA+RY+      L + DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q VMRAIA+Q+RTIRLP H+HD L+ IR+A R+L  ELGR  T  E++ ++    +++ + +++     +S+      S T G     XXXXXXXXXXXX    T+ + + D  Q P D    ++L+DDV RL+  L+ RE+AV+RMR+GLDDG+A TL+++G RF+VTRERIRQIEARALHKLRQP+ + SV+ +
Sbjct:  176 ELLNKNEEIILGREIQILVKWEEQRELLEAQLLRPPTYAEWAASIRSDMSVPEMKRQIRRSLRAKAALTESNLRLVISIAKRYQ---NRGLSMQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQAVMRAIADQARTIRLPVHIHDQLNQIRKAERDLHNELGREPTKEEISEKIGFKADKVEF-LKRAAMGSISMEMELRSSKTKGSGASTXXXXXXXXXXXXERGFTLEDTLKDPDQKPADIAATQMLKDDVSRLICTLNTREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVKSY 495          
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Match: A0A6S8QQK8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QQK8_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.260e-77
Identity = 151/324 (46.60%), Postives = 218/324 (67.28%), Query Frame = 0
Query:  120 DLLTAQDEIKLGKLVQKRIGWDGERTKLEAALGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIARRYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTVMRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDMAEERLSYYMEKDRAEPVSLSTTVGGXXXXXXXXXXXXXXXXXT---SLTIGERVTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTLKQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVE 440
            +LL   +EI L + +Q  IGW+G+R +LEA L RPP+  EW+           M++++ R+  AK  +  +NLRLV+SIA+RY+      L   DL QEGT GL +A E+FDP++GFRFSTYA+WW++Q++MRAIA+Q+RTIRLP H+HD L  + +A R+LQ  LGR  T  E+A ++++  ER+ + +++   + +S+ T +G       XXXXXXXXXXX      T+ + + D  Q P    E  +L+DD+ RL+  L+ RE+AV+RMR+GLDDG+  TL+++G +F+VTRERIRQIEARALHKLRQP+     R H V+
Sbjct:  140 ELLKKNEEIILAREIQVLIGWEGKREELEAKLLRPPTYAEWASNVQSGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKRYQ---NRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQARTIRLPVHIHDQLALMNKAERDLQQSLGRDPTKEEIAAKIEVKPERIEF-LKRSALKAISIETELGSGKTKGSXXXXXXXXXXXXXGRQFTLQDTLKDPEQKPDFMAENNMLKDDISRLICTLNSREQAVIRMRFGLDDGKPKTLEEIGRKFSVTRERIRQIEARALHKLRQPY-----RNHGVK 454          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1174.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM85_9STRA3.950e-8446.54RNA polymerase sigma-70 factor n=1 Tax=Tribonema m... [more]
A0A7S2WX55_9STRA1.800e-8343.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1B782_9STRA4.090e-8349.38Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2KJI8_9STRA5.850e-8341.44Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A835ZES3_9STRA5.240e-8245.17RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7R9ZH78_9STRA2.340e-8145.57Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8C130_THAPS8.780e-8144.72RNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A835ZBY3_9STRA7.830e-8045.17RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S4VUL7_9STRA8.320e-7947.84Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6S8QQK8_9STRA1.260e-7746.60Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 214..227
score: 66.87
coord: 238..246
score: 71.33
coord: 399..414
score: 54.31
coord: 414..425
score: 62.47
coord: 378..390
score: 51.17
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 214..227
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 399..425
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 362..438
e-value: 6.1E-28
score: 98.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 261..312
e-value: 4.9E-12
score: 47.7
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 375..427
e-value: 5.5E-20
score: 70.6
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 183..428
e-value: 4.7E-33
score: 112.1
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 187..259
e-value: 2.8E-19
score: 68.7
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 271..330
e-value: 3.7E-10
score: 39.8
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 156..260
e-value: 6.4E-40
score: 139.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..75
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 117..429
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 117..429
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 368..426
e-value: 4.6583E-12
score: 58.655
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 118..260
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 340..431
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 258..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1174contigP-wetherbeei_contig1174:5009..6838 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1174.3.1mRNA_P-wetherbeei_contig1174.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1174 4019..7713 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1174.3.1 ID=prot_P-wetherbeei_contig1174.3.1|Name=mRNA_P-wetherbeei_contig1174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=443bp
MDGAARRDHMRRRRSMHTRVLVGLGLLACGAAFAPPVSTPLAAARQRAAA
AAATTETIERRPRRTVPRRQQTDEAQQRKQPVLGNAAIPSTSWDSERPTS
QGRKAARMAGKQGHFDETPDLLTAQDEIKLGKLVQKRIGWDGERTKLEAA
LGRPPSLEEWSQACGLDGGAEGMRRRVARTDAAKERMVSANLRLVMSIAR
RYKFSVQSKLPLGDLIQEGTFGLVKAVERFDPDKGFRFSTYASWWVRQTV
MRAIAEQSRTIRLPSHVHDLLHHIRRAGRELQAELGRPATLSELAGRMDM
AEERLSYYMEKDRAEPVSLSTTVGGASASKPGGGGGSSGGGGTSLTIGER
VTDAGQSPQDFTEKRLLQDDVERLLWKLSPRERAVLRMRYGLDDGRAMTL
KQVGERFNVTRERIRQIEARALHKLRQPFISCSVRQHSVEVL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR036388WH-like_DNA-bd_sf
IPR007630RNA_pol_sigma70_r4
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR007624RNA_pol_sigma70_r3
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3/r4-like