mRNA_P-wetherbeei_contig11718.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11718.1.1
Unique NamemRNA_P-wetherbeei_contig11718.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11718.1.1 vs. uniprot
Match: A0A835YUW4_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.070e-5
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1 
Query:   67 SSGGDPNKRNAATLWPPLALAAHRGREAVMRELLARGADPEKSVDGGYTPLMLCCSCGSAELSCHKVPASPSSAGGVCGHLRAAEALLEAGARVETRSDQCFTPLAIAAY 396
            S+G D N RN   LW P+ +A   G   V++ELL RGADP +      T  +L                        CGH+ AA+ LLEAGA V  ++ Q +T + +AAY
Sbjct:   40 SAGSDINARNEC-LWAPIHVACRAGHATVVQELLKRGADPMRHDQSAGTATVL-----------------------PCGHVEAAQHLLEAGALVSAKTKQGYTSIMMAAY 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11718.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUW4_9STRA1.070e-535.45Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11718contigP-wetherbeei_contig11718:3..1825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LJW6
PFAMsAnk,Ank_2,NACHT
Model size1558
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.37e-18
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_009930.1
Descriptionspectrin binding
Cds size1557
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.7997327-CDS-P-wetherbeei_contig11718:2..2081683185923.7997327-CDS-P-wetherbeei_contig11718:2..208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11718 3..208 +
1683185923.8079515-CDS-P-wetherbeei_contig11718:348..10511683185923.8079515-CDS-P-wetherbeei_contig11718:348..1051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11718 349..1051 +
1683185923.815143-CDS-P-wetherbeei_contig11718:1177..18251683185923.815143-CDS-P-wetherbeei_contig11718:1177..1825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11718 1178..1825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11718.1.1prot_P-wetherbeei_contig11718.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11718 3..1825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11718.1.1

>prot_P-wetherbeei_contig11718.1.1 ID=prot_P-wetherbeei_contig11718.1.1|Name=mRNA_P-wetherbeei_contig11718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=519bp
MVAPDVWTAAMAGDTEGVRVYLSSGGDPNKRNAATLWPPLALAAHRGREA
VMRELLARGADPEKSVDGGYTPLMLCCSCGSAELSCHKVPASPSSAGGVC
GHLRAAEALLEAGARVETRSDQCFTPLAIAAYQGHIDLVRHLLDRGARTE
ARNKQRHSPLSLAAQMGHAAVVELLLTRGANIESRTDIDLTPLAVAAQEG
RAAVVAALLARGADIAAANDLGFTPLALAADMGHLEVVRLLAAAGGDTAS
RNDAQQTPLALAAAAGHAPVVAALLSGLSGAAAAAGGTISSSDAANAATF
AATTVLRLLLDSGADPNAANNKGFTPLMRSCEHGHAGCAALLLAGGGAAA
IGAASGAGNTALLLACWRGHASLAAALLQAGAAAEDRNAQGFTPLLLACQ
GGHDATAAALLAAGTDVTAVTTQGFTALMLAAQCGNTRLISLLVAAGADA
NAKQDGTGDTALGLAAHFGHAAAIEALLAAGADKTSRDADGAGIGDEFDP
AVSSERRRECGLLLWGAEW
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mRNA from alignment at P-wetherbeei_contig11718:3..1825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11718.1.1 ID=mRNA_P-wetherbeei_contig11718.1.1|Name=mRNA_P-wetherbeei_contig11718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1823bp|location=Sequence derived from alignment at P-wetherbeei_contig11718:3..1825+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGCCCGACGTGTGGACCGCGGCCATGGCCGGCGACACCGAGGG
CGTGCGGGTGTATTTGAGCTCCGGCGGCGATCCCAACAAGCGCAACGCCG
CCACCCTCTGGCCGCCGTTAGCGTTGGCGGCTCATCGAGGACGTGAGGCG
GTGATGCGAGAGCTCTTGGCGCGCGGTGCCGACCCAGAGAAGTCCGTCGA
CGGCGGGTGAGCTGGATATTATTTGAAAACGCCCCACTTTGGATGGCCGA
AGCTGAGCGAGAAAATCGCCGAGTGTTGCAACTCCGTCATCATAAGCACC
AAAAACAAACGCGTGTCCGCTTTTTCTTGGAAATCCCCAAATTCAGGTAC
ACGCCACTGATGCTCTGCTGCAGCTGCGGGAGCGCCGAGCTCTCTTGCCA
CAAGGTGCCGGCCTCCCCGTCGTCTGCTGGCGGCGTATGCGGCCACCTTC
GTGCGGCCGAGGCCCTCCTCGAGGCCGGCGCGCGCGTCGAGACTCGCTCC
GACCAGTGCTTCACGCCGCTCGCGATCGCAGCCTACCAGGGACACATCGA
CCTGGTGCGCCACCTGCTCGACCGCGGCGCCAGGACGGAGGCCCGCAACA
AGCAGCGGCACTCGCCGCTCTCGCTGGCGGCGCAGATGGGCCACGCCGCC
GTCGTCGAGCTGCTGCTCACCCGCGGCGCCAATATTGAGTCCCGGACGGA
CATTGACCTGACACCGCTGGCGGTCGCCGCCCAGGAGGGCCGCGCCGCCG
TCGTGGCGGCGCTCTTGGCACGCGGCGCTGACATCGCCGCGGCGAACGAT
CTGGGGTTCACGCCGCTGGCGCTGGCGGCGGATATGGGTCACCTGGAGGT
GGTGCGGCTGCTGGCGGCGGCAGGCGGTGACACGGCCAGCCGCAACGACG
CCCAGCAAACGCCGTTGGCGCTTGCCGCCGCCGCCGGCCACGCCCCAGTC
GTGGCTGCGCTGCTCAGTGGCCTGAGCGGCGCCGCTGCGGCCGCAGGAGG
AACAATTAGCTCATCGGATGCTGCCAATGCTGCCACGTTCGCCGCCACCG
TCATTATCGGCGAGCCCCCCGCCGCCGCCAGTGTCGCCACCGCCGCTGCG
ACCGCGGCAGGCGTCAACGTTCCCGACGACAGTGGCGTGACGCCGGCGTC
GGCGGCGGCGGCGGCGGGCCACGAGACCGTCCTGCGGCTCCTTCTCGACT
CTGGCGCGGACCCCAATGCCGCAAACAACAAGGGATTCACGCCGCTGATG
CGCTCGTGCGAACACGGCCATGCCGGCTGTGCCGCGCTGCTCCTCGCGGG
CGGCGGGGCAGCGGCGATCGGAGCCGCGTCCGGCGCCGGCAACACGGCAC
TCCTTCTGGCCTGCTGGCGCGGCCACGCCTCGCTGGCGGCGGCGCTTCTG
CAAGCCGGGGCGGCGGCGGAGGACCGCAACGCGCAGGGGTTCACGCCACT
GCTGCTGGCGTGCCAGGGTGGCCATGATGCCACCGCCGCCGCGCTCCTGG
CCGCCGGCACCGACGTGACTGCCGTAACCACCCAGGGCTTTACCGCGCTG
ATGCTGGCGGCGCAGTGCGGCAACACGAGGCTCATTTCCCTGCTGGTCGC
CGCCGGCGCTGACGCGAACGCCAAGCAGGATGGCACAGGCGACACTGCAC
TGGGTCTGGCGGCACACTTCGGCCATGCGGCGGCAATCGAGGCGCTGCTG
GCGGCCGGCGCCGACAAGACATCGCGCGACGCCGACGGCGCCGGGATCGG
CGACGAGTTCGACCCGGCCGTCAGCTCGGAGCGGCGGCGGGAGTGCGGCC
TGCTGCTGTGGGGAGCGGAGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11718:3..1825+

>mRNA_P-wetherbeei_contig11718.1.1 ID=mRNA_P-wetherbeei_contig11718.1.1|Name=mRNA_P-wetherbeei_contig11718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1557bp|location=Sequence derived from alignment at P-wetherbeei_contig11718:3..1825+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGCCCGACGTGTGGACCGCGGCCATGGCCGGCGACACCGAGGG
CGTGCGGGTGTATTTGAGCTCCGGCGGCGATCCCAACAAGCGCAACGCCG
CCACCCTCTGGCCGCCGTTAGCGTTGGCGGCTCATCGAGGACGTGAGGCG
GTGATGCGAGAGCTCTTGGCGCGCGGTGCCGACCCAGAGAAGTCCGTCGA
CGGCGGGTACACGCCACTGATGCTCTGCTGCAGCTGCGGGAGCGCCGAGC
TCTCTTGCCACAAGGTGCCGGCCTCCCCGTCGTCTGCTGGCGGCGTATGC
GGCCACCTTCGTGCGGCCGAGGCCCTCCTCGAGGCCGGCGCGCGCGTCGA
GACTCGCTCCGACCAGTGCTTCACGCCGCTCGCGATCGCAGCCTACCAGG
GACACATCGACCTGGTGCGCCACCTGCTCGACCGCGGCGCCAGGACGGAG
GCCCGCAACAAGCAGCGGCACTCGCCGCTCTCGCTGGCGGCGCAGATGGG
CCACGCCGCCGTCGTCGAGCTGCTGCTCACCCGCGGCGCCAATATTGAGT
CCCGGACGGACATTGACCTGACACCGCTGGCGGTCGCCGCCCAGGAGGGC
CGCGCCGCCGTCGTGGCGGCGCTCTTGGCACGCGGCGCTGACATCGCCGC
GGCGAACGATCTGGGGTTCACGCCGCTGGCGCTGGCGGCGGATATGGGTC
ACCTGGAGGTGGTGCGGCTGCTGGCGGCGGCAGGCGGTGACACGGCCAGC
CGCAACGACGCCCAGCAAACGCCGTTGGCGCTTGCCGCCGCCGCCGGCCA
CGCCCCAGTCGTGGCTGCGCTGCTCAGTGGCCTGAGCGGCGCCGCTGCGG
CCGCAGGAGGAACAATTAGCTCATCGGATGCTGCCAATGCTGCCACGTTC
GCCGCCACCACCGTCCTGCGGCTCCTTCTCGACTCTGGCGCGGACCCCAA
TGCCGCAAACAACAAGGGATTCACGCCGCTGATGCGCTCGTGCGAACACG
GCCATGCCGGCTGTGCCGCGCTGCTCCTCGCGGGCGGCGGGGCAGCGGCG
ATCGGAGCCGCGTCCGGCGCCGGCAACACGGCACTCCTTCTGGCCTGCTG
GCGCGGCCACGCCTCGCTGGCGGCGGCGCTTCTGCAAGCCGGGGCGGCGG
CGGAGGACCGCAACGCGCAGGGGTTCACGCCACTGCTGCTGGCGTGCCAG
GGTGGCCATGATGCCACCGCCGCCGCGCTCCTGGCCGCCGGCACCGACGT
GACTGCCGTAACCACCCAGGGCTTTACCGCGCTGATGCTGGCGGCGCAGT
GCGGCAACACGAGGCTCATTTCCCTGCTGGTCGCCGCCGGCGCTGACGCG
AACGCCAAGCAGGATGGCACAGGCGACACTGCACTGGGTCTGGCGGCACA
CTTCGGCCATGCGGCGGCAATCGAGGCGCTGCTGGCGGCCGGCGCCGACA
AGACATCGCGCGACGCCGACGGCGCCGGGATCGGCGACGAGTTCGACCCG
GCCGTCAGCTCGGAGCGGCGGCGGGAGTGCGGCCTGCTGCTGTGGGGAGC
GGAGTGG
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