mRNA_P-wetherbeei_contig1166.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1166.3.1
Unique NamemRNA_P-wetherbeei_contig1166.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1166.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1166contigP-wetherbeei_contig1166:2813..4706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1894
Hectar predicted targeting categoryother localisation
Exons1
Cds size1182
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185921.0470803-UTR-P-wetherbeei_contig1166:2812..34091683185921.0470803-UTR-P-wetherbeei_contig1166:2812..3409Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1166 2813..3409 -
1683185921.068671-UTR-P-wetherbeei_contig1166:4591..47061683185921.068671-UTR-P-wetherbeei_contig1166:4591..4706Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1166 4592..4706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185921.0592458-CDS-P-wetherbeei_contig1166:3409..45911683185921.0592458-CDS-P-wetherbeei_contig1166:3409..4591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1166 3410..4591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1166.3.1prot_P-wetherbeei_contig1166.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1166 3410..4591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1166.3.1

>prot_P-wetherbeei_contig1166.3.1 ID=prot_P-wetherbeei_contig1166.3.1|Name=mRNA_P-wetherbeei_contig1166.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=394bp
MGDDDDDYEEDEPFSPRSKVPRRDGAAAGPSSRRKRANLPSPPTRALRRR
RQNWDADGDAEAEVEEDDADSDASTVDAEPPWTTPRRCFRVVPRYPKDDD
ESGVDGGEGYDSSEPGDAGSYGEEESGGGGGSEHIAGAGYSEAMDMDDSE
GEGRIIAAAQRRYRTAESGGCYSYGTERSDANDGGRHSDSSWSSGTSRAS
GASGASAVSGSSGASSRCGSGGGGGSSSGGGGSSGRSGTVRVDGDNTASY
GGPRRNFRVIHGPSLQQQPQQKQAHDPCRRGAAVAEVASCGYPDADGATD
GTTDNDDDDMEEEALPLVAAMLRMLRNGGLPSPAASTASTEDGVRSVSWA
DAAPHHYGGFNGSGCGGNGHLSSYSSPGGWRSSNGDRDCDNGH*
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mRNA from alignment at P-wetherbeei_contig1166:2813..4706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1166.3.1 ID=mRNA_P-wetherbeei_contig1166.3.1|Name=mRNA_P-wetherbeei_contig1166.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1894bp|location=Sequence derived from alignment at P-wetherbeei_contig1166:2813..4706- (Phaeothamnion wetherbeei SAG_119_79)
ACGCAAGGAGAAGCGCCCCCGGCAGCAGCAGCAGCAGCAGCTGGAAAAGG
GAGCAGCAGACGCCGGCGGCAGCGGTAGCGGCGCTGGCGGCGGCAGCGCC
GGGAGAAAAAGTCGGATGGGCGACGACGACGACGACTATGAGGAGGATGA
GCCGTTCTCGCCGCGGTCGAAGGTGCCCCGCAGGGACGGAGCGGCGGCCG
GTCCGTCGTCACGCCGCAAGCGCGCAAACCTGCCGTCGCCGCCGACGCGG
GCGCTAAGACGGCGCCGCCAGAACTGGGACGCTGACGGTGATGCCGAGGC
GGAGGTAGAGGAGGACGATGCCGACTCGGACGCGTCGACCGTCGACGCTG
AACCTCCGTGGACGACGCCACGGCGCTGCTTTCGCGTGGTGCCGCGCTAC
CCCAAAGACGACGATGAGAGCGGCGTGGATGGCGGCGAGGGTTACGACTC
TTCAGAACCCGGCGACGCCGGCAGCTACGGCGAGGAAGAAAGCGGCGGTG
GCGGCGGCAGCGAGCACATCGCAGGCGCCGGATACAGTGAGGCAATGGAC
ATGGATGACAGTGAGGGAGAGGGAAGAATAATCGCCGCGGCACAGCGTCG
CTACCGTACCGCCGAGTCCGGCGGCTGCTACAGCTATGGGACGGAGCGCA
GCGACGCCAACGACGGCGGCCGCCACAGCGACTCGAGCTGGTCGTCGGGG
ACCTCGCGCGCCAGCGGCGCCAGCGGCGCCAGCGCTGTCAGCGGCAGTAG
TGGCGCCAGCAGCCGGTGCGGCAGCGGCGGTGGTGGCGGCAGCAGCAGTG
GTGGTGGCGGCAGCAGCGGCCGCAGCGGCACCGTCAGGGTAGACGGCGAC
AACACTGCCAGCTACGGCGGCCCACGCCGTAACTTCCGCGTCATCCACGG
ACCATCATTGCAGCAGCAGCCACAGCAGAAGCAGGCGCATGATCCCTGCA
GAAGGGGCGCGGCGGTGGCGGAGGTGGCGTCCTGCGGCTATCCGGACGCC
GACGGCGCCACAGACGGGACGACTGACAACGACGACGACGACATGGAGGA
GGAGGCGCTGCCGCTCGTCGCAGCCATGCTGCGGATGCTCCGAAACGGCG
GGCTGCCGTCGCCGGCCGCATCGACCGCGTCGACGGAGGACGGCGTGCGG
TCCGTGTCGTGGGCGGACGCGGCGCCGCACCATTACGGCGGCTTCAACGG
CTCGGGCTGCGGCGGCAACGGCCACTTGTCTTCCTACTCGAGCCCTGGCG
GGTGGCGGTCATCCAATGGTGATCGCGACTGCGACAATGGGCACTGACTG
TGTGGAGTGAGCCGGGTCGCTGCAGCTGACTCAGCGGGGCGAGGGGCACA
TGCCGGCAGGTGCCGTTACATCGCTCGCTTTCGGCGCTTGGCGTTGCCTG
CTCGCAAGCCGAAGTGTGCACGACAGTGCGCGGCATTGGGCCGGGCGAGG
GAAGGGCCCTTGACAGAAAAGTAAAAATTTGGGGTTTCTTTCCTGCGGCT
TACATTCTGGCCGGCCGGGGCCTTCATTGGAACTTAGGAAACGAGGGGGA
TGGTGCGATTCATTTGTTACGAAGCCGAGGCCTTCATTGGAACTTAGGAA
ACGAGGGGGATAGCGCGATTCATTTGTTACGACACCTTTGAGTGCTGCTC
GCTAAAGGGAGACACCTCCGTTGGGAAAGGAGAGTAGCAGGGCAGGCAAG
CGCGGAGGGAAAACTACGGACATGAGGGCGGAAAGAATGGTATGAGAGGC
AAACCGCGGGTGCTACGCCGGCGGACGAGGAAATGTTCCATTTCCTCAAT
GCCTCGTGCATATTGTCCGGCGCGGTCATTAAGGGAAGCATTTTCCTTTC
TCCTATGGGATTTCTACTACACATCCACGGCGCGCATGAAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1166:2813..4706-

>mRNA_P-wetherbeei_contig1166.3.1 ID=mRNA_P-wetherbeei_contig1166.3.1|Name=mRNA_P-wetherbeei_contig1166.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1182bp|location=Sequence derived from alignment at P-wetherbeei_contig1166:2813..4706- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGACGACGACGACGACTATGAGGAGGATGAGCCGTTCTCGCCGCG
GTCGAAGGTGCCCCGCAGGGACGGAGCGGCGGCCGGTCCGTCGTCACGCC
GCAAGCGCGCAAACCTGCCGTCGCCGCCGACGCGGGCGCTAAGACGGCGC
CGCCAGAACTGGGACGCTGACGGTGATGCCGAGGCGGAGGTAGAGGAGGA
CGATGCCGACTCGGACGCGTCGACCGTCGACGCTGAACCTCCGTGGACGA
CGCCACGGCGCTGCTTTCGCGTGGTGCCGCGCTACCCCAAAGACGACGAT
GAGAGCGGCGTGGATGGCGGCGAGGGTTACGACTCTTCAGAACCCGGCGA
CGCCGGCAGCTACGGCGAGGAAGAAAGCGGCGGTGGCGGCGGCAGCGAGC
ACATCGCAGGCGCCGGATACAGTGAGGCAATGGACATGGATGACAGTGAG
GGAGAGGGAAGAATAATCGCCGCGGCACAGCGTCGCTACCGTACCGCCGA
GTCCGGCGGCTGCTACAGCTATGGGACGGAGCGCAGCGACGCCAACGACG
GCGGCCGCCACAGCGACTCGAGCTGGTCGTCGGGGACCTCGCGCGCCAGC
GGCGCCAGCGGCGCCAGCGCTGTCAGCGGCAGTAGTGGCGCCAGCAGCCG
GTGCGGCAGCGGCGGTGGTGGCGGCAGCAGCAGTGGTGGTGGCGGCAGCA
GCGGCCGCAGCGGCACCGTCAGGGTAGACGGCGACAACACTGCCAGCTAC
GGCGGCCCACGCCGTAACTTCCGCGTCATCCACGGACCATCATTGCAGCA
GCAGCCACAGCAGAAGCAGGCGCATGATCCCTGCAGAAGGGGCGCGGCGG
TGGCGGAGGTGGCGTCCTGCGGCTATCCGGACGCCGACGGCGCCACAGAC
GGGACGACTGACAACGACGACGACGACATGGAGGAGGAGGCGCTGCCGCT
CGTCGCAGCCATGCTGCGGATGCTCCGAAACGGCGGGCTGCCGTCGCCGG
CCGCATCGACCGCGTCGACGGAGGACGGCGTGCGGTCCGTGTCGTGGGCG
GACGCGGCGCCGCACCATTACGGCGGCTTCAACGGCTCGGGCTGCGGCGG
CAACGGCCACTTGTCTTCCTACTCGAGCCCTGGCGGGTGGCGGTCATCCA
ATGGTGATCGCGACTGCGACAATGGGCACTGA
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