mRNA_P-wetherbeei_contig11652.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11652.1.1
Unique NamemRNA_P-wetherbeei_contig11652.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A7S1UHI2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHI2_9STRA)

HSP 1 Score: 256 bits (653), Expect = 4.580e-76
Identity = 115/228 (50.44%), Postives = 165/228 (72.37%), Query Frame = 3
Query:  309 AQIHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAFRGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLE 992
            A I TI+++NR+D P D S + D ++RRLFP W+++SQ PF +  GG +L+ A D + A+A+  + ++ STWR+P+   GRYVRVQ++GF++LH AQ++VFGT+G  RS G+V +V+CGR VTVAV+ P PDP D+  AY+RAV AD  NA++LRQ ET+  E+D+ GRGD  + C LC GG+LCE+C  +  +R +L K+PLGPGGRL  LD +  F+ +  KP L+
Sbjct:    8 AVIQTIKLWNRSDEPADMSQERDKYTRRLFPCWIIISQHPFAEETGGISLQKALDISVARAKFTDVKRLSTWRVPENTTGRYVRVQLQGFNFLHFAQLQVFGTYGLNRSVGQVRHVSCGRDVTVAVIPPAPDPQDIERAYKRAVKADAGNADLLRQFETYALEFDRIGRGDRIKVCELCQGGKLCEICTFKEQYRHELTKMPLGPGGRLATLDEMGDFIANVPKPELD 235          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A7S2FDN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDN5_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.390e-73
Identity = 113/228 (49.56%), Postives = 161/228 (70.61%), Query Frame = 3
Query:  309 AQIHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAFRGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLE 992
            A IH+I+++NR D P DPS + D F +RLFP+++ML Q P+ D +GG++L+ + D + A+ +L + ++C+TW +PD    RYVRVQ+EGF +LH AQ+EVFGT G  +  GR  +V CG+ VTV V+R LPDP D   AY+RAV AD  NA +LRQ ETF  E+DK+G GD+ + C +C GG+LCE+C+L+  ++++L  LPLG GGR+R LD   + L +  KP LE
Sbjct:  131 AVIHSIKIWNRTDEPPDPSFESDMFQQRLFPSYLMLGQEPYLDMIGGDSLQRSLDNSVARMKLTKCQRCTTWHVPDNICARYVRVQLEGFSFLHFAQIEVFGTPGIAKPVGRCGFVQCGKNVTVGVIRALPDPRDTERAYKRAVLADAHNANILRQYETFSLEYDKYGHGDSIKNCLICKGGQLCEVCSLKSVYKEELDTLPLGIGGRIRTLDETIQGLLNAPKPPLE 358          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A7S2D7D3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D7D3_9STRA)

HSP 1 Score: 232 bits (592), Expect = 5.530e-66
Identity = 109/231 (47.19%), Postives = 156/231 (67.53%), Query Frame = 3
Query:  315 IHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDG-VGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAFRGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLEADNK 1004
            I TI+++NR D P D S + D F +RLFP++V++S+ PFDD   G ++LR+A + + AK +L+  ++CSTW +PD    RYVR+Q+EGF++LH AQ EVFGT G  +  GR S    G+Y TVA++RPLPDP D+  AYRRAV  D  +A++LR  E+F  ++DK+GRGDA   C +C  G+LCE+C L+H +RD+   + LG GGR   L  + + L D  KP L+ + K
Sbjct:  171 IQTIKIWNRIDEPPDKSFEADLFQKRLFPSYVIISRDPFDDKETGAKSLRSALNLSVAKMKLSRNQRCSTWHVPDNTCARYVRLQLEGFEFLHFAQFEVFGTPGINKPVGRCSKAIAGKYATVALIRPLPDPMDIDKAYRRAVLCDSHHADILRHFESFALQYDKYGRGDAVTACIVCRLGKLCEICELKHRYRDERKAMGLGIGGRSLTLGEIKQALLDAPKPPLDYEKK 401          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A8J2SRF7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRF7_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.920e-60
Identity = 102/227 (44.93%), Postives = 149/227 (65.64%), Query Frame = 3
Query:  309 AQIHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAFRGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGL 989
            A +H ++++NR D P D ++  D +S RL P W+M SQ+P+ D VGG +L  A   + A+ ++   ++C+TW +P+    RY+RVQ+EGF++LH AQ+EVFG  G + S GR S V CG++ TVA++RPL DPAD+   Y+RA+ +D  NA++LR+ ETF  E+DK+GRG     C +CTGG+ CE C ++  F  +L  L LG  GR+  LD +A  L D  KP L
Sbjct: 1007 ANLHIVKLWNRTDEPPDQTMARDKYSSRLVPCWIMASQKPYSDEVGGSSLINALGQSVARHQITRDKRCTTWHVPENISARYIRVQLEGFNFLHFAQLEVFGIIGVQGSVGRCSRVVCGKHCTVAIIRPLSDPADINRVYKRAILSDAQNADILRERETFALEYDKYGRGGKDMECIICTGGQKCENCLMKERFAGELKDLSLGAAGRVLTLDEMAEMLLDAPKPPL 1233          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A482S3L9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3L9_9ARCH)

HSP 1 Score: 219 bits (558), Expect = 1.240e-57
Identity = 111/230 (48.26%), Postives = 149/230 (64.78%), Query Frame = 3
Query:  306 LAQIHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAF-RGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLE 992
            +A I  I V+NR D PTD +L  D ++ RLFP WVM+ + PF  G    +L+ +   A  KA+L E ++ STWR P  A GRYVR+Q+E ++ L +AQVEVFG +G  R  GR SYV  GR VTVAV+RP  DP DV  AY+RA  AD LNA++LRQ ETF  E+DK+GRG+   + C +C G   CE C +   F+ D++ +P   GGR RRL S++ FL ++ KP L+
Sbjct:  891 IAVIDKIVVWNRTDKPTDRNLPHDLYTARLFPCWVMVGRDPFPTGANVISLKESLRLAVCKAKLTEDKRVSTWRCPSNAQGRYVRIQLERYNTLSVAQVEVFGYWGYSRGVGRCSYVCAGRDVTVAVVRPSHDPRDVEFAYKRAAYADSLNADILRQYETFALEYDKFGRGEVLEKACVICKGMDKCEACIVYETFKKDILNMPPAVGGRRRRLKSISDFLINSNKPELQ 1120          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: D7FVN6_ECTSI (Guanyl nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVN6_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 8.210e-57
Identity = 96/175 (54.86%), Postives = 128/175 (73.14%), Query Frame = 3
Query:  306 LAQIHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAFR 830
            L  +H ++++NR D P DPS++ +F+++RLFP WVM SQ PF D VGG AL  A + A A+A   E ++C  WR PD+ + RYVRVQ++GFD+LH+AQVEVFGT GARRSPG+V++   G+YVT AV+  + D ADV   Y+RAV AD  NAEVLR+ ETF   +D+WGRGDA +
Sbjct:  440 LVHVHQVKIWNRCDEPKDPSMERNFYAKRLFPCWVMASQEPFKDDVGGAALLDAMNTAVARAHFKEEQRCLVWRCPDQTMARYVRVQLQGFDFLHMAQVEVFGTTGARRSPGKVTHCCAGKYVTTAVMAAMQDSADVETVYKRAVQADAFNAEVLREFETFFAAYDQWGRGDAIK 614          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A7S3MIJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIJ8_9STRA)

HSP 1 Score: 196 bits (499), Expect = 5.960e-54
Identity = 101/227 (44.49%), Postives = 137/227 (60.35%), Query Frame = 3
Query:  315 IHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAF-RGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLE 992
            I  I V+NR D P D S   D +S RLFP W+M+ + PF       +L+     A  + +L E ++ STWR P  A GRY+R+Q+E F+ L +A++EV+G +G  R  GRVSY   GR VTVAV+RP  DP DV   Y+RA  AD  NA++LRQ ETF  E+DK+GRG+   R C +C G   CE C     F  D+ ++P   GGR RRL S++ +L  + KP L+
Sbjct:  127 IDKIVVWNRTDEPRDRSEPRDLYSARLFPCWLMVGRDPFIKSADVVSLKENLKNAVCRGKLTENKRASTWRCPANAQGRYIRLQLEKFNTLSVAEIEVYGYWGISRGVGRVSYAVAGRDVTVAVVRPSNDPRDVEYLYKRAAYADSCNADILRQYETFTLEYDKFGRGEVLSRDCCICKGLDKCEACLFYETFDKDIRRMPPVVGGRRRRLKSISEYLITSNKPDLQ 353          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A836CBD3_9STRA (Guanyl nucleotide exchange factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.860e-47
Identity = 87/144 (60.42%), Postives = 110/144 (76.39%), Query Frame = 3
Query:  309 AQIHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAV 740
            A+I T+RV+NR+D P DPS   D ++RRLFP WVM+S+ P+ +G GG+AL+AA   + A+ RL   R+CSTWRLPD+   RYVR+Q+EGF++LHLAQVEV GT GARRSPGRV +   GRYVT  V+R LPDP DV  AY+RAV
Sbjct:  453 ARIDTVRVWNRSDEPDDPSFGADLYARRLFPCWVMVSRTPYAEGTGGDALKAALAQSQARVRLTAQRRCSTWRLPDQTSARYVRIQLEGFNFLHLAQVEVLGTKGARRSPGRVCHAVAGRYVTAVVVRALPDPEDVEVAYKRAV 596          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: W4H9F4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9F4_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.540e-38
Identity = 90/233 (38.63%), Postives = 126/233 (54.08%), Query Frame = 3
Query:  315 IHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKA-VGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAF--RGCALCTGGRLCELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLEADNK 1004
            +  I+V+NR D P D S + D F+ RLFP W+++S+ PFDD VG  +L+A    + A A+ A+  + + W LP    VGRY+R+Q++G  YLHLAQV+VFG + A    G VS V C + VT+ V+RPLP        Y +A+ ADP NA +LRQ + +   +  +GRG+A     C LC   R CE+C            LPL   G    L      +   E P L  D +
Sbjct: 1157 LERIKVWNRTDQPVDTSRRRDEFTSRLFPFWILVSEVPFDDSVGSASLKAGRAQSNASAQFADNHRLTEWVLPSTGTVGRYIRIQVKGKRYLHLAQVDVFGVYNAFNYVGHVSTVQCAKNVTLVVMRPLPSATSTHDHYLKAIQADPDNATILRQYDAYAKCFQLYGRGEALTHEKCRLCRAIRQCEVCEFYTSTPSS--DLPLTTLGEKLGLAEATDVILSREPPRLTFDKR 1387          
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Match: A0A024UUX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUX4_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.150e-38
Identity = 82/189 (43.39%), Postives = 115/189 (60.85%), Query Frame = 3
Query:  315 IHTIRVYNRNDSPTDPSLQPDFFSRRLFPAWVMLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKA-VGRYVRVQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPADVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAF--RGCALCTGGRLCELC 872
            +  I+V+NR D P D S + D F+RRLFP W+M+S+ PFDD +G  +L+A  D + A A+  E  + + W LP    VGRY+R+Q++G  YLH+AQVEVFG + A    G VS V C + VT+ V+RPL     +   Y +A+ ADP NA +LRQ E +   +  +GRG+      C LC   R CE+C
Sbjct: 1160 LERIKVWNRTDQPVDTSRRRDEFTRRLFPFWIMVSEVPFDDTMGRASLKAGRDHSNASAQFTEDHRLTEWVLPSTGTVGRYIRIQVKGKRYLHVAQVEVFGVYNAFNYVGHVSSVQCAKNVTLVVMRPLSSATSIHDHYIKAIQADPDNATILRQYEAYAKCFQLYGRGEGLTVEKCRLCRATRRCEVC 1348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11652.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1UHI2_9STRA4.580e-7650.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2FDN5_9STRA2.390e-7349.56Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2D7D3_9STRA5.530e-6647.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SRF7_9STRA2.920e-6044.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482S3L9_9ARCH1.240e-5748.26Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FVN6_ECTSI8.210e-5754.86Guanyl nucleotide exchange factor n=1 Tax=Ectocarp... [more]
A0A7S3MIJ8_9STRA5.960e-5444.49Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A836CBD3_9STRA3.860e-4760.42Guanyl nucleotide exchange factor n=1 Tax=Tribonem... [more]
W4H9F4_9STRA2.540e-3838.63Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UUX4_9STRA6.150e-3843.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11652contigP-wetherbeei_contig11652:62..2116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVN6
Preferred nameHERC1
PFAMsHECT,RCC1,SPRY,WD40
Model size1716
Max annot lvl2759|Eukaryota
KEGG koko:K10594
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0008150,GO:0012505,GO:0016020,GO:0019899,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051020,GO:0065007,GO:0065009,GO:0098772
Exons2
Evalue2.73e-43
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
Cds size1143
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.7376707-UTR-P-wetherbeei_contig11652:61..4711683185920.7376707-UTR-P-wetherbeei_contig11652:61..471Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11652 62..471 +
1683185920.7685633-UTR-P-wetherbeei_contig11652:1953..21161683185920.7685633-UTR-P-wetherbeei_contig11652:1953..2116Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11652 1954..2116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.7528808-CDS-P-wetherbeei_contig11652:471..6601683185920.7528808-CDS-P-wetherbeei_contig11652:471..660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11652 472..660 +
1683185920.7604032-CDS-P-wetherbeei_contig11652:999..19531683185920.7604032-CDS-P-wetherbeei_contig11652:999..1953Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11652 1000..1953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11652.1.1prot_P-wetherbeei_contig11652.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11652 472..1953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11652.1.1

>prot_P-wetherbeei_contig11652.1.1 ID=prot_P-wetherbeei_contig11652.1.1|Name=mRNA_P-wetherbeei_contig11652.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=381bp
MLSQRPFDDGVGGEALRAAADAATAKARLAEPRQCSTWRLPDKAVGRYVR
VQIEGFDYLHLAQVEVFGTFGARRSPGRVSYVACGRYVTVAVLRPLPDPA
DVAAAYRRAVAADPLNAEVLRQLETFVPEWDKWGRGDAFRGCALCTGGRL
CELCALRHDFRDDLMKLPLGPGGRLRRLDSVARFLYDTEKPGLEADNKFT
RGGSGGDENDGSDSSSDEEEGEKPAGVLRKRRGSGGEKDDSKDVKGGKGS
KINSGSKRGLLGMLRGRHRRSNGRGKNGEAAAAGKDGDGDGRTSGGEDDG
ADGQGSRAGGAGADAGRPVEGGDGSDSDESTRSISEGSGDRSGGGGAASG
GRNGSGGRKGGADARGARRRGKKKSVTPGG*
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mRNA from alignment at P-wetherbeei_contig11652:62..2116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11652.1.1 ID=mRNA_P-wetherbeei_contig11652.1.1|Name=mRNA_P-wetherbeei_contig11652.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2055bp|location=Sequence derived from alignment at P-wetherbeei_contig11652:62..2116+ (Phaeothamnion wetherbeei SAG_119_79)
TGTTCAGCTTTCACAGGCAGCTTCTTCATGCATCTAGTGGCACGAAAACA GAAGCATCTACAGCAGCCTCTCCAATTCCTCATGCCTCGTGTGTCGACCA TACCTTTCTCTATCTCTTTGGTGCTGCCCTCCGCTTCAGTTCCCGCCCAC TCTTGATCAAAGACCTCGCTGCCGCCGCCGCCACCGTCCCCATCGGCGCC GACCCTGATCTTTTCTTCCTGTCATCGCTGACGCAAAAACTTCTAGTTAT TTCCTCTTTTACTCCCTGTTATTACCCCAAACGGTCTCCACCCGCCGCCT CCTGCCTCGCACAGATCCACACGATCCGGGTCTACAACAGGAACGACTCC CCAACGGACCCGTCACTCCAGCCGGACTTTTTTAGCCGCCGCCTCTTCCC GGCCTGGGTCATGCTCTCACAACGGCCCTTCGATGATGGCGTCGGCGGCG AGGCGCTGCGGGCGGCGGCTGACGCGGCGACAGCCAAGGCACGGCTGGCG GAGCCGCGGCAGTGCAGCACATGGCGGCTGCCGGACAAGGCAGTGGGGCG GTACGTGCGCGTGCAGATCGAGGGCTTCGACTACCTCCACCTGGCCCAGG TGAAGAGAACGAGGCAGCAAACGGCGGGGGCATTGGCTTGACGAAAGATA AGGAGGATCGACTTCGGAGAAAAGGAGGAGGAGCAGGTGCGGATGAAGGC GTTGTTTCGCTTTGACTTCTTCAGTGCACTTTCTTCCGTCCTTGGTTTTA CGGTTGTCAAGTTATGAGTAATAACATTGGACTAGGTTCGTGTTTCAAAC CCCCGATTGGATGCCATGTCTAACCATTTCATGCAACCCGTCTTTTTCTC ACTTTCCAATATTGTACCGGCCTCTTCCCTCCCTCTCCTTTCTTTCGCTT TTGCAAAACGAACCACTCCACAAACCACCAACAAACAGGTGGAAGTCTTC GGCACCTTCGGCGCACGGCGCAGCCCTGGACGTGTCTCCTACGTGGCCTG CGGCCGCTACGTCACCGTTGCCGTCCTTCGGCCGCTGCCGGACCCGGCCG ACGTTGCCGCCGCCTACCGCCGCGCCGTCGCCGCCGACCCTTTGAACGCA GAAGTCTTGCGGCAGCTGGAGACGTTCGTGCCCGAATGGGACAAGTGGGG CCGTGGCGATGCCTTTCGCGGTTGCGCGCTCTGCACGGGCGGCCGGCTCT GCGAATTGTGCGCGCTGCGGCACGACTTCCGCGACGACCTGATGAAGCTG CCGCTGGGGCCCGGCGGCCGGCTACGGCGGCTCGACAGCGTGGCACGGTT CTTGTACGACACGGAGAAGCCCGGGCTGGAGGCAGACAACAAGTTTACCC GTGGCGGCAGCGGTGGCGATGAAAACGACGGCAGCGACAGCAGCAGCGAC GAGGAAGAAGGCGAGAAGCCCGCCGGGGTGCTGCGAAAGCGGCGAGGAAG CGGCGGCGAGAAGGATGATAGTAAGGATGTTAAGGGCGGTAAAGGCAGCA AGATCAACAGCGGCAGCAAGCGTGGCCTGCTGGGGATGCTGCGCGGCAGG CACCGCCGCAGTAACGGTCGCGGCAAGAACGGGGAAGCCGCTGCCGCCGG CAAAGATGGTGATGGCGATGGAAGAACGAGTGGAGGCGAAGACGACGGCG CCGACGGCCAGGGCAGTCGCGCCGGCGGTGCAGGGGCCGATGCCGGACGA CCAGTGGAGGGCGGAGATGGCTCCGATTCGGACGAGAGCACTCGTTCGAT CAGTGAGGGCAGCGGCGACCGATCAGGAGGCGGCGGTGCCGCCAGCGGCG GCCGAAACGGCAGCGGCGGTCGGAAGGGCGGTGCCGACGCCCGTGGCGCT CGGCGACGCGGTAAGAAGAAGTCTGTGACGCCCGGCGGATAACGGCTGTG TTCCATCATCGAAGCCCAAACCTATATGGCCTGATAAGAAGGCCGATATA CTAAACTGTGACCCCAAAACTTCCTTCACAACACACCAGAGGATGCCCTG CAGTGACTCTGCTGGCATCCTGATGTCGAACGACGTCGAACAGGCGAAAA TGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11652:62..2116+

>mRNA_P-wetherbeei_contig11652.1.1 ID=mRNA_P-wetherbeei_contig11652.1.1|Name=mRNA_P-wetherbeei_contig11652.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1143bp|location=Sequence derived from alignment at P-wetherbeei_contig11652:62..2116+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTCACAACGGCCCTTCGATGATGGCGTCGGCGGCGAGGCGCTGCG
GGCGGCGGCTGACGCGGCGACAGCCAAGGCACGGCTGGCGGAGCCGCGGC
AGTGCAGCACATGGCGGCTGCCGGACAAGGCAGTGGGGCGGTACGTGCGC
GTGCAGATCGAGGGCTTCGACTACCTCCACCTGGCCCAGGTGGAAGTCTT
CGGCACCTTCGGCGCACGGCGCAGCCCTGGACGTGTCTCCTACGTGGCCT
GCGGCCGCTACGTCACCGTTGCCGTCCTTCGGCCGCTGCCGGACCCGGCC
GACGTTGCCGCCGCCTACCGCCGCGCCGTCGCCGCCGACCCTTTGAACGC
AGAAGTCTTGCGGCAGCTGGAGACGTTCGTGCCCGAATGGGACAAGTGGG
GCCGTGGCGATGCCTTTCGCGGTTGCGCGCTCTGCACGGGCGGCCGGCTC
TGCGAATTGTGCGCGCTGCGGCACGACTTCCGCGACGACCTGATGAAGCT
GCCGCTGGGGCCCGGCGGCCGGCTACGGCGGCTCGACAGCGTGGCACGGT
TCTTGTACGACACGGAGAAGCCCGGGCTGGAGGCAGACAACAAGTTTACC
CGTGGCGGCAGCGGTGGCGATGAAAACGACGGCAGCGACAGCAGCAGCGA
CGAGGAAGAAGGCGAGAAGCCCGCCGGGGTGCTGCGAAAGCGGCGAGGAA
GCGGCGGCGAGAAGGATGATAGTAAGGATGTTAAGGGCGGTAAAGGCAGC
AAGATCAACAGCGGCAGCAAGCGTGGCCTGCTGGGGATGCTGCGCGGCAG
GCACCGCCGCAGTAACGGTCGCGGCAAGAACGGGGAAGCCGCTGCCGCCG
GCAAAGATGGTGATGGCGATGGAAGAACGAGTGGAGGCGAAGACGACGGC
GCCGACGGCCAGGGCAGTCGCGCCGGCGGTGCAGGGGCCGATGCCGGACG
ACCAGTGGAGGGCGGAGATGGCTCCGATTCGGACGAGAGCACTCGTTCGA
TCAGTGAGGGCAGCGGCGACCGATCAGGAGGCGGCGGTGCCGCCAGCGGC
GGCCGAAACGGCAGCGGCGGTCGGAAGGGCGGTGCCGACGCCCGTGGCGC
TCGGCGACGCGGTAAGAAGAAGTCTGTGACGCCCGGCGGATAA
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