mRNA_P-wetherbeei_contig1164.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1164.3.1
Unique NamemRNA_P-wetherbeei_contig1164.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1164.3.1 vs. uniprot
Match: UPI002022A89E (FAD-binding oxidoreductase n=1 Tax=Natronobacterium sp. WLHS5 TaxID=2932267 RepID=UPI002022A89E)

HSP 1 Score: 49.7 bits (117), Expect = 9.790e-5
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  151 DDASVKALEETLRGKLILPFPESDEYDDARELWNLDITELRPAAIIQAQGASD 309
            D+  ++  +E LRG LI  FP+S+EY+DAR +WN  I E  PA I++  GASD
Sbjct:   15 DENDLREFDEDLRGDLI--FPDSEEYEDARNVWNGLINEY-PAVIVRVNGASD 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1164.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI002022A89E9.790e-549.06FAD-binding oxidoreductase n=1 Tax=Natronobacteriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1164contigP-wetherbeei_contig1164:1507..2059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1283299.AUKG01000002_gene3706
PFAMsBBE,FAD_binding_4
Model size309
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue9.76e-05
EggNOG OGsCOG0277@1|root,COG0277@2|Bacteria,2GK5U@201174|Actinobacteria,4CRYD@84995|Rubrobacteria
DescriptionPFAM FAD linked oxidase domain protein
Cds size171
COG categoryC
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.0816984-UTR-P-wetherbeei_contig1164:1506..16441683185920.0816984-UTR-P-wetherbeei_contig1164:1506..1644Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1164 1507..1644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185920.0897238-CDS-P-wetherbeei_contig1164:1644..17491683185920.0897238-CDS-P-wetherbeei_contig1164:1644..1749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1164 1645..1749 +
1683185920.0969043-CDS-P-wetherbeei_contig1164:1993..20591683185920.0969043-CDS-P-wetherbeei_contig1164:1993..2059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1164 1994..2059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1164.3.1prot_P-wetherbeei_contig1164.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1164 1645..2059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1164.3.1

>prot_P-wetherbeei_contig1164.3.1 ID=prot_P-wetherbeei_contig1164.3.1|Name=mRNA_P-wetherbeei_contig1164.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
MLTRDDASVKALEETLRGKLILPFPESDEYDDARELWNLDITELRPAAII
QAQGASD
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mRNA from alignment at P-wetherbeei_contig1164:1507..2059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1164.3.1 ID=mRNA_P-wetherbeei_contig1164.3.1|Name=mRNA_P-wetherbeei_contig1164.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=553bp|location=Sequence derived from alignment at P-wetherbeei_contig1164:1507..2059+ (Phaeothamnion wetherbeei SAG_119_79)
TGTAAATCGAATGGCGCGAGGGTGAAGAGACAGAATACACAGAGCACCAG
AGACTTCACAAGAACGGCTTAGAAGCAGCATTGCGAAAGTGGCAACAGTT
GTGACAAAAATTGGAAGACCGCACTCCGTCGTGACAAAATGTTGACCCGC
GACGACGCTTCCGTAAAAGCGCTCGAAGAGACCCTGCGCGGGAAGCTGAT
TCTTCCCTTTCCCGAAAGCGATGAGTACGACGACGCTCGCGAGGTGAGTG
GACGGAAAATGCAAACGAAGTTTCTTCTTGTCTGCCACTTCATTAATTTC
AGCGTCAGGGACGCCATCAAGCCTCCAGGCGCTGTGCTATCGCTGCCGCC
TATTCCTCTTCCTGTACTCGTTGATCGCTGTTATGACTTTGAAGAGGCCT
TCCTGTCCCAGTGGCATTCCTTTTTATGCTCATCTGTCCCTTCCCTCCCT
TCTCCTGTCGGAACGGCTGTGCCATGACCCATTCCAGTTGTGGAACTTGG
ACATCACAGAGCTTCGGCCGGCCGCCATCATCCAGGCGCAAGGCGCCAGC
GAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1164:1507..2059+

>mRNA_P-wetherbeei_contig1164.3.1 ID=mRNA_P-wetherbeei_contig1164.3.1|Name=mRNA_P-wetherbeei_contig1164.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig1164:1507..2059+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGACCCGCGACGACGCTTCCGTAAAAGCGCTCGAAGAGACCCTGCG
CGGGAAGCTGATTCTTCCCTTTCCCGAAAGCGATGAGTACGACGACGCTC
GCGAGTTGTGGAACTTGGACATCACAGAGCTTCGGCCGGCCGCCATCATC
CAGGCGCAAGGCGCCAGCGAC
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