mRNA_P-wetherbeei_contig1163.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1163.3.1
Unique NamemRNA_P-wetherbeei_contig1163.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1163.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1163contigP-wetherbeei_contig1163:1543..3593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra80613
PFAMszf-C3HC4
Model size2052
Max annot lvl4776|Peronosporales
KEGG koko:K10627
Hectar predicted targeting categorychloroplast
Exons1
Evalue1.24e-08
EggNOG OGsCOG5432@1|root,KOG0287@2759|Eukaryota,3QDV4@4776|Peronosporales
EC2.3.2.27
DescriptionRING-type zinc-finger
Cds size1929
COG categoryO
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.8301802-CDS-P-wetherbeei_contig1163:1542..34711683185919.8301802-CDS-P-wetherbeei_contig1163:1542..3471Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1163 1543..3471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.840082-UTR-P-wetherbeei_contig1163:3471..35931683185919.840082-UTR-P-wetherbeei_contig1163:3471..3593Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1163 3472..3593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1163.3.1prot_P-wetherbeei_contig1163.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1163 1543..3471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1163.3.1

>prot_P-wetherbeei_contig1163.3.1 ID=prot_P-wetherbeei_contig1163.3.1|Name=mRNA_P-wetherbeei_contig1163.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=643bp
MLRSKEILSMLLISLPTAFAFRCGALPAFFHSCPFPHSTPRSDMCKGFLD
TPHSTPCNHTFCCRCILAFLPKATDGQCPSCRTKLSVGQLTPNQPLRDII
RLFAVVRNPLIDLVTASSKAQPANSGGNGRNTTSASASAQAAPSVGAGDG
GGSAKRPQRPHRPHYHSLKDKVLKELLQQWRLPTTGGRQDMVDLHRAFVD
LFYAEEAKPEEERRSVAALARQVVGEAEQRRRAEAVTAGAAHIVAALREG
DLGRLPEVHKAAVKDKFAKMVQEVRARRRNLAGQKRPRPEEEEEEEEREN
GRDDGEGGGGGSSSGGSRRSSSGSGSSDGNESNRPATSGAYRVGESDAGA
QDESSGNQNGSGGASSGGGSRGGRSHIAIPSASGDRPAKLQRVDFATVLG
VAGVLVPVSAPWRCLADCILYVNRESGETTTEVPLEVEAERAAMTAAAAS
PAAVAAAASGSAGGSAEEEQRLPKHLVFVPTHSFSPLVQAEGESSGAAAA
MVGAGRHALPQPSPPSPRPPSLTAASAQEHEKTSLFWRGNSAGAGSSSGS
AGVARWTESGDGGGGGGRGGRYDGGGGNCAGRSSGGGGGSGGGGGDHNVI
DMTKDLDDAATEDDEPSLESPARRSKPSLAAAAPASSGSAKAE
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mRNA from alignment at P-wetherbeei_contig1163:1543..3593-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1163.3.1 ID=mRNA_P-wetherbeei_contig1163.3.1|Name=mRNA_P-wetherbeei_contig1163.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2051bp|location=Sequence derived from alignment at P-wetherbeei_contig1163:1543..3593- (Phaeothamnion wetherbeei SAG_119_79)
CAACTCTCGAGGACGACGGCGATGTGGAGGACTGGCCCAAGAAGGCTCTA
GGAGTCGATCTGGCTGAGATCGAGCGTAAACTGAGGTGGTGAGCGACGAT
TGCACGCGGGTCCGACTTTCTGATGCTAAGATCAAAGGAAATATTAAGTA
TGCTGCTTATTTCGTTGCCGACGGCATTCGCTTTTCGATGTGGCGCTCTT
CCCGCCTTTTTTCACAGTTGCCCTTTTCCTCATTCCACTCCTCGTAGCGA
CATGTGCAAGGGCTTCCTGGACACGCCGCATAGCACGCCGTGCAACCACA
CGTTCTGCTGCCGGTGCATCCTGGCCTTCCTGCCCAAGGCCACGGACGGC
CAATGCCCGTCCTGCCGCACCAAGCTGTCGGTCGGGCAGCTGACGCCCAA
CCAGCCCCTGCGGGATATCATCCGCCTCTTTGCGGTTGTCCGCAATCCGC
TCATCGATCTCGTTACAGCTTCAAGCAAGGCACAACCTGCCAACAGCGGC
GGCAATGGCCGCAACACCACTTCTGCTTCTGCCTCGGCTCAGGCAGCCCC
GTCGGTCGGCGCGGGCGACGGCGGCGGCAGCGCAAAGCGGCCGCAACGGC
CGCACCGCCCGCACTACCACTCTCTCAAGGACAAGGTGCTCAAGGAGCTG
CTGCAGCAGTGGCGCCTGCCGACGACCGGCGGCCGGCAGGACATGGTCGA
CCTCCACCGCGCTTTCGTGGACCTCTTCTACGCAGAGGAGGCTAAGCCCG
AGGAAGAGCGCCGGTCGGTGGCGGCGCTGGCGCGGCAAGTCGTCGGCGAG
GCGGAGCAGCGACGGCGGGCGGAGGCGGTGACAGCAGGCGCAGCGCATAT
CGTGGCGGCGTTGCGGGAGGGGGACTTGGGGCGGCTTCCGGAGGTTCACA
AGGCGGCGGTGAAGGATAAGTTTGCCAAGATGGTGCAGGAGGTTCGGGCG
CGACGCCGCAATCTGGCCGGGCAGAAGCGGCCACGGCCGGAGGAAGAAGA
GGAAGAGGAGGAGAGAGAAAACGGGCGAGATGACGGGGAGGGCGGCGGCG
GCGGGAGCAGCAGCGGCGGCAGCAGGAGAAGCAGCAGCGGCAGCGGAAGC
AGCGACGGGAACGAAAGCAACAGACCTGCCACCAGCGGCGCCTACCGCGT
CGGAGAGAGCGATGCAGGCGCCCAAGACGAAAGTTCCGGCAATCAGAATG
GCTCTGGCGGCGCGAGCAGCGGCGGCGGCAGTCGCGGCGGTCGCAGCCAT
ATCGCCATCCCAAGTGCTAGCGGCGATCGGCCGGCCAAGCTGCAGCGGGT
GGACTTCGCCACCGTCCTCGGCGTCGCCGGCGTGCTCGTCCCTGTCTCGG
CGCCGTGGCGCTGCCTCGCGGACTGCATTCTGTACGTTAACCGGGAGTCG
GGTGAGACAACGACAGAGGTGCCGCTGGAGGTGGAGGCGGAGCGCGCCGC
AATGACCGCCGCCGCCGCTTCTCCCGCCGCCGTGGCCGCTGCGGCGTCGG
GTTCAGCCGGAGGGAGCGCGGAAGAGGAGCAGCGGCTGCCGAAGCACCTC
GTCTTCGTTCCGACGCATAGCTTTTCGCCACTGGTACAGGCGGAGGGAGA
GAGCAGCGGGGCGGCGGCGGCGATGGTGGGAGCAGGGCGCCACGCGTTGC
CACAGCCGTCTCCGCCGTCGCCGCGGCCGCCGTCACTCACAGCGGCTTCC
GCGCAGGAGCACGAGAAGACTTCTCTGTTTTGGCGCGGCAACAGCGCTGG
CGCTGGCTCCTCGTCGGGATCTGCGGGTGTGGCGCGGTGGACGGAAAGTG
GCGACGGCGGCGGCGGCGGTGGCAGAGGCGGCAGATATGACGGAGGTGGC
GGGAATTGTGCTGGTCGCTCCAGCGGCGGCGGCGGCGGCAGCGGTGGTGG
CGGTGGCGACCACAACGTCATTGACATGACGAAAGATCTGGATGACGCCG
CGACGGAAGACGATGAGCCGTCGTTGGAGAGTCCGGCCCGCCGCAGCAAA
CCTTCTCTTGCGGCGGCGGCCCCGGCATCATCGGGTTCAGCAAAGGCAGA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1163:1543..3593-

>mRNA_P-wetherbeei_contig1163.3.1 ID=mRNA_P-wetherbeei_contig1163.3.1|Name=mRNA_P-wetherbeei_contig1163.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1929bp|location=Sequence derived from alignment at P-wetherbeei_contig1163:1543..3593- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTAAGATCAAAGGAAATATTAAGTATGCTGCTTATTTCGTTGCCGAC
GGCATTCGCTTTTCGATGTGGCGCTCTTCCCGCCTTTTTTCACAGTTGCC
CTTTTCCTCATTCCACTCCTCGTAGCGACATGTGCAAGGGCTTCCTGGAC
ACGCCGCATAGCACGCCGTGCAACCACACGTTCTGCTGCCGGTGCATCCT
GGCCTTCCTGCCCAAGGCCACGGACGGCCAATGCCCGTCCTGCCGCACCA
AGCTGTCGGTCGGGCAGCTGACGCCCAACCAGCCCCTGCGGGATATCATC
CGCCTCTTTGCGGTTGTCCGCAATCCGCTCATCGATCTCGTTACAGCTTC
AAGCAAGGCACAACCTGCCAACAGCGGCGGCAATGGCCGCAACACCACTT
CTGCTTCTGCCTCGGCTCAGGCAGCCCCGTCGGTCGGCGCGGGCGACGGC
GGCGGCAGCGCAAAGCGGCCGCAACGGCCGCACCGCCCGCACTACCACTC
TCTCAAGGACAAGGTGCTCAAGGAGCTGCTGCAGCAGTGGCGCCTGCCGA
CGACCGGCGGCCGGCAGGACATGGTCGACCTCCACCGCGCTTTCGTGGAC
CTCTTCTACGCAGAGGAGGCTAAGCCCGAGGAAGAGCGCCGGTCGGTGGC
GGCGCTGGCGCGGCAAGTCGTCGGCGAGGCGGAGCAGCGACGGCGGGCGG
AGGCGGTGACAGCAGGCGCAGCGCATATCGTGGCGGCGTTGCGGGAGGGG
GACTTGGGGCGGCTTCCGGAGGTTCACAAGGCGGCGGTGAAGGATAAGTT
TGCCAAGATGGTGCAGGAGGTTCGGGCGCGACGCCGCAATCTGGCCGGGC
AGAAGCGGCCACGGCCGGAGGAAGAAGAGGAAGAGGAGGAGAGAGAAAAC
GGGCGAGATGACGGGGAGGGCGGCGGCGGCGGGAGCAGCAGCGGCGGCAG
CAGGAGAAGCAGCAGCGGCAGCGGAAGCAGCGACGGGAACGAAAGCAACA
GACCTGCCACCAGCGGCGCCTACCGCGTCGGAGAGAGCGATGCAGGCGCC
CAAGACGAAAGTTCCGGCAATCAGAATGGCTCTGGCGGCGCGAGCAGCGG
CGGCGGCAGTCGCGGCGGTCGCAGCCATATCGCCATCCCAAGTGCTAGCG
GCGATCGGCCGGCCAAGCTGCAGCGGGTGGACTTCGCCACCGTCCTCGGC
GTCGCCGGCGTGCTCGTCCCTGTCTCGGCGCCGTGGCGCTGCCTCGCGGA
CTGCATTCTGTACGTTAACCGGGAGTCGGGTGAGACAACGACAGAGGTGC
CGCTGGAGGTGGAGGCGGAGCGCGCCGCAATGACCGCCGCCGCCGCTTCT
CCCGCCGCCGTGGCCGCTGCGGCGTCGGGTTCAGCCGGAGGGAGCGCGGA
AGAGGAGCAGCGGCTGCCGAAGCACCTCGTCTTCGTTCCGACGCATAGCT
TTTCGCCACTGGTACAGGCGGAGGGAGAGAGCAGCGGGGCGGCGGCGGCG
ATGGTGGGAGCAGGGCGCCACGCGTTGCCACAGCCGTCTCCGCCGTCGCC
GCGGCCGCCGTCACTCACAGCGGCTTCCGCGCAGGAGCACGAGAAGACTT
CTCTGTTTTGGCGCGGCAACAGCGCTGGCGCTGGCTCCTCGTCGGGATCT
GCGGGTGTGGCGCGGTGGACGGAAAGTGGCGACGGCGGCGGCGGCGGTGG
CAGAGGCGGCAGATATGACGGAGGTGGCGGGAATTGTGCTGGTCGCTCCA
GCGGCGGCGGCGGCGGCAGCGGTGGTGGCGGTGGCGACCACAACGTCATT
GACATGACGAAAGATCTGGATGACGCCGCGACGGAAGACGATGAGCCGTC
GTTGGAGAGTCCGGCCCGCCGCAGCAAACCTTCTCTTGCGGCGGCGGCCC
CGGCATCATCGGGTTCAGCAAAGGCAGAA
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