prot_P-wetherbeei_contig11629.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig11629.1.1
Unique Nameprot_P-wetherbeei_contig11629.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length128
Homology
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.580e-36
Identity = 67/126 (53.17%), Postives = 84/126 (66.67%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKWV 126
            M FC EC+NIL+P+E R+ + L+YACN C +R +A + CVYENNLV+T++ KLDIV + V++DPTLQRS    C  C  +EAVFFQA              DDS KS SLSLIFVC +  C  KWV
Sbjct:    1 MRFCKECNNILHPKENRTTRTLFYACNRCAYREEAGQSCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQA--------------DDSAKSSSLSLIFVCTH--CGKKWV 110          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.660e-35
Identity = 65/128 (50.78%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKE-PCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKWVS 127
            M FC EC+NI++P+E ++ ++L Y+CN C +   A+   CVY NNL+ T+  KLDIVQ  V+DDPTLQRS +  C  C   EAVFFQA              D+  KSQSLSLIFVC N+ C HKWVS
Sbjct:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQA--------------DEGAKSQSLSLIFVCTNRACGHKWVS 237          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A6G0V615_9BILA (DNA-directed RNA polymerase subunit n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V615_9BILA)

HSP 1 Score: 114 bits (284), Expect = 5.220e-30
Identity = 57/125 (45.60%), Postives = 75/125 (60.00%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCP C+N+LYPRE +  +QL Y C +C     A  PC+Y N L+   D    IV D VI+DPTL ++FD  C  C G EAVFFQA++         RRA+D +K     L +VC NK+CVH+W
Sbjct:   23 IKFCPNCNNMLYPREDKDHRQLMYTCRNCDHTELADSPCIYVNKLMHEIDELTQIVAD-VINDPTLPKTFDHVCPKCQGKEAVFFQAQS---------RRAEDEMK-----LYYVCTNKECVHRW 132          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A0R3PPZ8_ANGCS (DNA-directed RNA polymerase subunit n=6 Tax=Strongylida TaxID=6308 RepID=A0A0R3PPZ8_ANGCS)

HSP 1 Score: 111 bits (277), Expect = 4.010e-29
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCPEC+N+LYPRE +  +QL YAC +C  +  A  PC+Y N LV   D    I  D V+ DPTL ++ D PC  CGGT+AVFFQA+T         RRA++ ++     L +VC +  C H+W
Sbjct:    9 IKFCPECNNMLYPREDKEHRQLMYACRNCDHKEVADNPCIYVNKLVHEVDELTQICAD-VVHDPTLPKTEDHPCPRCGGTKAVFFQAQT---------RRAEEEMR-----LYYVCMDTTCSHRW 118          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A6S8ESB1_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8ESB1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.060e-29
Identity = 49/127 (38.58%), Postives = 76/127 (59.84%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKWVS 127
            + FCPEC+N+LYP+E R++K+L   C HC F + A+ P VY + + + +  +LD+V   +  DPTL R++DT C  CGG EAVFF +R+                +   ++L+F+C N  C HKW++
Sbjct:    4 IQFCPECNNMLYPKEDRAEKKLLLTCRHCEFEKPAENPTVYIHKIKKDTAMRLDLVDPALSGDPTLPRTYDTNCEKCGGNEAVFFMSRSGG--------------RDSDMALVFLCVNSACHHKWLN 116          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A0N4UVS3_ENTVE (DNA-directed RNA polymerase subunit n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N4UVS3_ENTVE)

HSP 1 Score: 110 bits (275), Expect = 8.290e-29
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCPEC+N+LYP+E +  +QL YAC +C  ++ A  PC+Y N L    D    IV D VI DPTL ++ D PC  C G EAVFFQA++         RRA++ ++     L +VC N DC H+W
Sbjct:   10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQIADNPCIYVNKLTHEVDELTQIVAD-VIYDPTLPKTEDHPCPKCKGREAVFFQAQS---------RRAEEEMR-----LYYVCTNPDCTHRW 119          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A226DZ96_FOLCA (DNA-directed RNA polymerase subunit n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DZ96_FOLCA)

HSP 1 Score: 110 bits (274), Expect = 1.610e-28
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCPEC+N+LYPRE +  +QL YAC +C +++ A   C+Y N +    D    IV D VI DPTL R+ D PC  C   EAVFFQA+T         RRA+D ++     L +VC N+ C H+W
Sbjct:   21 IKFCPECNNMLYPREDKENRQLLYACRNCDYKQIADNNCIYVNKITHEIDELTHIVSD-VISDPTLPRTEDHPCPKCQSKEAVFFQAQT---------RRAEDEMR-----LYYVCTNQHCTHRW 130          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A1P6CBC0_BRUMA (DNA-directed RNA polymerase subunit n=8 Tax=Spirurina TaxID=6274 RepID=A0A1P6CBC0_BRUMA)

HSP 1 Score: 109 bits (273), Expect = 1.670e-28
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCPEC+N+LYP+E +  +QL YAC +C  ++ ++ PC+Y N L+   D    IV D V+ DPTL ++ D PC +C G EAVFFQA++         RRA++ ++     L +VC N  C H+W
Sbjct:   10 IKFCPECNNMLYPKEDKENRQLLYACRNCDHKQLSENPCIYVNKLMHEVDELTQIVAD-VVHDPTLPKTEDHPCPMCRGREAVFFQAQS---------RRAEEEMR-----LYYVCMNPTCAHRW 119          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A1D2MG47_ORCCI (DNA-directed RNA polymerase subunit n=2 Tax=Collembola TaxID=30001 RepID=A0A1D2MG47_ORCCI)

HSP 1 Score: 108 bits (271), Expect = 3.350e-28
Identity = 54/125 (43.20%), Postives = 74/125 (59.20%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCPEC+N+LYPRE +  +QL YAC +C +++ A   C+Y N +    D    IV D VI DPTL R+ D PC  C   EAVFFQA+T         RRA++ ++     L +VC N+ C H+W
Sbjct:   10 IKFCPECNNMLYPREDKENRQLLYACRNCDYKQLADNNCIYVNKITHEIDELTHIVSD-VISDPTLPRTEDHPCPKCQSKEAVFFQAQT---------RRAEEEMR-----LYYVCTNQHCTHRW 119          
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Match: A0A1I7XG92_HETBA (DNA-directed RNA polymerase subunit n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XG92_HETBA)

HSP 1 Score: 106 bits (265), Expect = 2.720e-27
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 0
Query:    1 MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSDTKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRRADDSLKSQSLSLIFVCCNKDCVHKW 125
            + FCPEC+N+LYPRE +  +QL Y+C +C  ++ A  PC+Y N L+   D    IV D V+ DPTL ++ D PC  CG  +AVFFQA+T         RRA++ ++     L +VC +  C H+W
Sbjct:   10 IKFCPECNNMLYPREDKEHRQLLYSCRNCEHKQVADNPCIYVNKLMHEVDELTQIVAD-VVHDPTLPKTEDHPCPKCGYNQAVFFQAQT---------RRAEEEMR-----LYYVCMDSTCGHRW 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11629.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYP5_9STRA1.580e-3653.17DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
D8LE56_ECTSI5.660e-3550.78TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6G0V615_9BILA5.220e-3045.60DNA-directed RNA polymerase subunit n=1 Tax=Halice... [more]
A0A0R3PPZ8_ANGCS4.010e-2944.00DNA-directed RNA polymerase subunit n=6 Tax=Strong... [more]
A0A6S8ESB1_9STRA5.060e-2938.58DNA-directed RNA polymerase subunit n=1 Tax=Aplano... [more]
A0A0N4UVS3_ENTVE8.290e-2944.00DNA-directed RNA polymerase subunit n=2 Tax=Oxyuri... [more]
A0A226DZ96_FOLCA1.610e-2844.00DNA-directed RNA polymerase subunit n=1 Tax=Folsom... [more]
A0A1P6CBC0_BRUMA1.670e-2841.60DNA-directed RNA polymerase subunit n=8 Tax=Spirur... [more]
A0A1D2MG47_ORCCI3.350e-2843.20DNA-directed RNA polymerase subunit n=2 Tax=Collem... [more]
A0A1I7XG92_HETBA2.720e-2741.60DNA-directed RNA polymerase subunit n=1 Tax=Hetero... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..56
e-value: 7.9E-5
score: 32.1
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..30
e-value: 4.7E-7
score: 29.6
NoneNo IPR availableGENE3D2.20.25.10coord: 1..43
e-value: 7.1E-16
score: 59.6
NoneNo IPR availableGENE3D2.20.25.10coord: 45..126
e-value: 6.0E-13
score: 50.5
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 1..125
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 52..125
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..45
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..125
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 70..126
score: 8.653128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11629contigP-wetherbeei_contig11629:783..1900 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11629.1.1mRNA_P-wetherbeei_contig11629.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig11629 783..1900 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig11629.1.1 ID=prot_P-wetherbeei_contig11629.1.1|Name=mRNA_P-wetherbeei_contig11629.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MSFCPECSNILYPREMRSQKQLYYACNHCTFRRKAKEPCVYENNLVRTSD
TKLDIVQDGVIDDPTLQRSFDTPCAVCGGTEAVFFQARTALGFYLFIKRR
ADDSLKSQSLSLIFVCCNKDCVHKWVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001222Znf_TFIIS