mRNA_P-wetherbeei_contig11619.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11619.3.1
Unique NamemRNA_P-wetherbeei_contig11619.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11619.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11619contigP-wetherbeei_contig11619:1129..2120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size937
Hectar predicted targeting categoryother localisation
Exons2
Cds size570
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.1464748-UTR-P-wetherbeei_contig11619:1128..11791683185919.1464748-UTR-P-wetherbeei_contig11619:1128..1179Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11619 1129..1179 +
1683185919.1738176-UTR-P-wetherbeei_contig11619:1804..21201683185919.1738176-UTR-P-wetherbeei_contig11619:1804..2120Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11619 1805..2120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185919.155818-CDS-P-wetherbeei_contig11619:1179..16341683185919.155818-CDS-P-wetherbeei_contig11619:1179..1634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11619 1180..1634 +
1683185919.1644478-CDS-P-wetherbeei_contig11619:1689..18041683185919.1644478-CDS-P-wetherbeei_contig11619:1689..1804Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11619 1690..1804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11619.3.1prot_P-wetherbeei_contig11619.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11619 1180..1804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11619.3.1

>prot_P-wetherbeei_contig11619.3.1 ID=prot_P-wetherbeei_contig11619.3.1|Name=mRNA_P-wetherbeei_contig11619.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MMMTGGPGPAVAAAAEAGRRASPTVGAQPVQLRGGYILERSTVTPQAPGP
ELQADRQPQRQQAPQWQIQQQHLQQQQHLQQQQLQQQLQQQQLQQQRQQQ
QQWQQQQQQQQPQQQQAAPARHPQSLADHSPHAQHQRYLLELQQQQQQQQ
QQAEPLTGASAPVPAPAWLTRGPAQLPSTGTAPAALSRN*
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mRNA from alignment at P-wetherbeei_contig11619:1129..2120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11619.3.1 ID=mRNA_P-wetherbeei_contig11619.3.1|Name=mRNA_P-wetherbeei_contig11619.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=992bp|location=Sequence derived from alignment at P-wetherbeei_contig11619:1129..2120+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTACGGCGATGTCAGCCGCGCGGGCGCCGGCGGCGGCAGGGGCGC
AATGATGATGACCGGCGGCCCCGGCCCCGCCGTCGCTGCCGCGGCGGAGG
CGGGTCGCCGGGCGAGCCCAACGGTGGGTGCCCAGCCGGTCCAGCTGCGC
GGGGGCTACATCCTGGAGAGATCAACAGTGACGCCGCAGGCGCCCGGGCC
GGAGCTTCAGGCAGACCGCCAGCCGCAGCGCCAGCAGGCTCCACAGTGGC
AGATACAGCAGCAGCATCTGCAGCAGCAACAACACCTGCAGCAACAGCAG
CTGCAACAGCAGCTGCAGCAGCAGCAGTTGCAGCAACAGCGTCAGCAACA
GCAGCAGTGGCAGCAACAGCAGCAGCAGCAACAGCCGCAGCAGCAGCAGG
CCGCGCCGGCTCGGCATCCGCAGTCTCTGGCGGACCATTCCCCGCATGCA
CAGCACCAGCGCTATCTGCTCGAGCTACAGCAGCAACAGCAGCAGCAGCA
GCAGCAGCAACAACAACAACAGCAGCAGCGGCCGCAGCAGCAGCAGCAGG
CCGGCTTTCAGGGCGGAACCGCTGACTGGGGCATCAGCCCCGGTGCCAGC
ACCAGCCTGGCTGACCCGTGGGCCAGCGCAGCTACCGTCGACCGGTACGG
CGCCCGCCGCCCTCTCTCGTAATTAAGCGGAGAAGGAAACGCGGCACGCT
GCCCGCCGGCCCGGTGCCACGGCGGCAGCGGCAAACGGAGAACGGAGGAA
AAGAAAGGCATCAGATGGATCCGCCAGAAGTCCAGCGCTTGATGACAACG
TTGGTTGCCGACGGCGGCAAACCTGTGGCGCGATGGCACCATTCCTGGGT
GGCTCGGAGCCACCTCATGCAATTTTTTTTTGTGGACTTCAACGTGGAAA
CATTGGGGGAATTAGGAAGAGGGCGGCTGGCCAGCCGGTTGGTTCTGGCA
AAGGCCTTTCGCGTTCCAATCCATGAGTCTCGTAGCTCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11619:1129..2120+

>mRNA_P-wetherbeei_contig11619.3.1 ID=mRNA_P-wetherbeei_contig11619.3.1|Name=mRNA_P-wetherbeei_contig11619.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig11619:1129..2120+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGATGACCGGCGGCCCCGGCCCCGCCGTCGCTGCCGCGGCGGAGGC
GGGTCGCCGGGCGAGCCCAACGGTGGGTGCCCAGCCGGTCCAGCTGCGCG
GGGGCTACATCCTGGAGAGATCAACAGTGACGCCGCAGGCGCCCGGGCCG
GAGCTTCAGGCAGACCGCCAGCCGCAGCGCCAGCAGGCTCCACAGTGGCA
GATACAGCAGCAGCATCTGCAGCAGCAACAACACCTGCAGCAACAGCAGC
TGCAACAGCAGCTGCAGCAGCAGCAGTTGCAGCAACAGCGTCAGCAACAG
CAGCAGTGGCAGCAACAGCAGCAGCAGCAACAGCCGCAGCAGCAGCAGGC
CGCGCCGGCTCGGCATCCGCAGTCTCTGGCGGACCATTCCCCGCATGCAC
AGCACCAGCGCTATCTGCTCGAGCTACAGCAGCAACAGCAGCAGCAGCAG
CAGCAGGCGGAACCGCTGACTGGGGCATCAGCCCCGGTGCCAGCACCAGC
CTGGCTGACCCGTGGGCCAGCGCAGCTACCGTCGACCGGTACGGCGCCCG
CCGCCCTCTCTCGTAATTAA
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