mRNA_P-wetherbeei_contig1161.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1161.2.1
Unique NamemRNA_P-wetherbeei_contig1161.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: D8LJU6_ECTSI (Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.270e-49
Identity = 86/130 (66.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 NFDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFV--VSVCEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMYS 384
            NFDKDGNG IDE ELG+VMRSLGYSPT QQLK+MM  VD +  G I F+EFV  + + EVETDF KEI EAFKFFDKDG+GE+TP ELA IMRGLG  LSD+EI +L+K A      VI++DEF+  MYS
Sbjct:   25 NFDKDGNGNIDELELGVVMRSLGYSPTNQQLKEMMAKVDTDQSGGISFDEFVAMMQLGEVETDFTKEINEAFKFFDKDGDGEVTPAELAEIMRGLGDKLSDDEIELLVKVAXXXXXXVISIDEFISFMYS 154          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A835YVF8_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.440e-49
Identity = 84/130 (64.62%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 NFDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSV--CEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMYS 384
            NFDKDGNGEID +ELGIVMRSLGYSPT +QL+DM+K           F EFV  +  CE+ TDFE EI+ AF+FFDKDG+G+IT  ELAS+MRGLGANLSD EI +L+KEAD NGDG I+L EF   +YS
Sbjct:   22 NFDKDGNGEIDLKELGIVMRSLGYSPTDKQLRDMLKQAXXXXXXXXTFNEFVEMMRRCELSTDFEMEIKGAFEFFDKDGDGDITSEELASVMRGLGANLSDQEIALLVKEADKNGDGAISLHEFTTFLYS 151          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: D8LH46_ECTSI (Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH46_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 5.030e-47
Identity = 78/129 (60.47%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    4 FDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSV--CEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMYS 384
            FDKDG+GEID  EL  VM SLGYSPT +QL+DMM  VD++G+G+I F EFV  +  C+V+TDF+++IREAFKFFD+DG+G I   EL +IMR LGA L+D+EI++L++EAD +GDG ++++EFL+IMYS
Sbjct:   27 FDKDGSGEIDLDELRTVMTSLGYSPTNKQLEDMMAKVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINEFLKIMYS 155          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A835YUT0_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 7.810e-44
Identity = 78/129 (60.47%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 NFDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSV--CEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMY 381
            NFDKD +GEIDE ELG VMRSLGY+PT +QL DMM  VDI+G+G I F+EFV+ +  CEVETDF++EI EAFK FDKDG+G I   EL +IM+GLGANLSD EI +L++E             FL+IMY
Sbjct:   26 NFDKDQSGEIDEYELGTVMRSLGYNPTDEQLHDMMLKVDIDGNGSISFDEFVIMMRKCEVETDFDREITEAFKVFDKDGSGSIDKEELTAIMKGLGANLSDQEIELLVREXXXXXXXXXXXXXFLKIMY 154          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A6H5JMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.240e-42
Identity = 77/123 (62.60%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 NFDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFV--VSVCEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDE 363
            NFDKD +G IDE ELG+VMRSLGYSPT +QLK++M  VD +G+G I FEEFV  + + EVETDF+KEI EAFKFFDKDG+GE+T  ELA IMRGLG  L+D+EI +L+K        VI++DE
Sbjct:   88 NFDKDCSGNIDESELGVVMRSLGYSPTNEQLKEIMAKVDTDGNGGISFEEFVAMMQLGEVETDFKKEINEAFKFFDKDGDGEVTRAELAEIMRGLGDTLTDDEIDLLVKVXXXXXXXVISIDE 210          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A835Z1Q3_9STRA (Calmodulin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.050e-39
Identity = 73/129 (56.59%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 NFDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSV--CEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMY 381
            NFDKDGNGEIDE EL  VMRSLGY+PT +QL DMM  +D++G+      EFV  +  CEVETDF++E+REAF+ FD+DG+G I   EL  IM+         +I +L++EAD +GDG INLDEF+RIMY
Sbjct:   27 NFDKDGNGEIDEIELSTVMRSLGYNPTDEQLHDMMLNIDLDGN------EFVTMMRKCEVETDFDREVREAFQVFDRDGSGAIDKAELTVIMKA--------KIELLVREADVDGDGAINLDEFIRIMY 141          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A197JTC6_9FUNG (EF-hand n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JTC6_9FUNG)

HSP 1 Score: 131 bits (330), Expect = 8.890e-37
Identity = 67/129 (51.94%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    4 FDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSVCE--VETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMYS 384
            FDKDG+G I  +ELG VMRSLG +PT+  L+DM+  VD +G+G I F EF+  +    V+TD E+EI+EAFK FDKDGNG I+  EL  ++  LG  L+D+E+  ++ EAD +GDG IN +EF+R+M S
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEADLQDMVNEVDADGNGTIDFPEFLTMMARKMVDTDSEEEIKEAFKVFDKDGNGYISAAELRHVLTNLGERLTDSEVDEMIHEADVDGDGQINYEEFVRMMMS 148          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A4V1IYQ4_9FUNG (Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 RepID=A0A4V1IYQ4_9FUNG)

HSP 1 Score: 130 bits (326), Expect = 3.600e-36
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    4 FDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSVCEV--ETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIMYS 384
            FDKDG+G I  +ELG VMRSLG +PT+ +L+DM+  VD +G+G I F EF+  +      TD E+EIREAFK FDKD NG I+  EL  +M  LG  L+D E+  +++EAD +GDG IN DEF+++M S
Sbjct:   20 FDKDGDGTITAKELGTVMRSLGQNPTEAELQDMVNEVDADGNGTIDFPEFLTMMARKMKNTDSEEEIREAFKVFDKDSNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKMMMS 148          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A7K5Z4Y6_9AVES (CALMS protein (Fragment) n=2 Tax=Pteroclidae TaxID=56295 RepID=A0A7K5Z4Y6_9AVES)

HSP 1 Score: 127 bits (320), Expect = 2.920e-35
Identity = 64/127 (50.39%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    4 FDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSVCEV--ETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIM 378
            FD+DG+G I  +ELG VMRSLG +PT+ +L++M+  VD +GDG + F EF+  +  +  +TD E+EIREAF+ FDKDGNG I+  EL  +M  LG  L+D E+  ++KEAD N DG +N +EF+R+M
Sbjct:   20 FDRDGDGCITTKELGTVMRSLGQNPTEAELQNMVGEVDADGDGTVDFPEFLSLMARMMRDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMM 146          
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Match: A0A670JEP2_PODMU (Calmodulin-A-like n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670JEP2_PODMU)

HSP 1 Score: 127 bits (320), Expect = 2.920e-35
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    4 FDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEEFVVSVCEV--ETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDNEIHMLLKEADSNGDGVINLDEFLRIM 378
            FDKDG+G I  +ELG VMRSLG++PT+ +L+ M+  VD NG G + F EF+  + +   ++D E+EIREAF+ FDKDGNG I+  EL  ++  LG  L+D E+  ++KEAD +GDG +N +EF+R+M
Sbjct:   20 FDKDGDGAITTKELGTVMRSLGHNPTEAELQSMIDQVDANGSGTVDFAEFLSLMAKQSKDSDSEEEIREAFRVFDKDGNGYISTAELRHVLTNLGEKLTDEEVDEMIKEADVDGDGRVNYEEFVRVM 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1161.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJU6_ECTSI1.270e-4966.15Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosu... [more]
A0A835YVF8_9STRA9.440e-4964.62Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
D8LH46_ECTSI5.030e-4760.47Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835YUT0_9STRA7.810e-4460.47Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5JMF0_9PHAE9.240e-4262.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1Q3_9STRA4.050e-3956.59Calmodulin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A197JTC6_9FUNG8.890e-3751.94EF-hand n=2 Tax=Mortierellaceae TaxID=4854 RepID=A... [more]
A0A4V1IYQ4_9FUNG3.600e-3651.94Calmodulin n=2 Tax=Zoopagomycota TaxID=1913638 Rep... [more]
A0A7K5Z4Y6_9AVES2.920e-3550.39CALMS protein (Fragment) n=2 Tax=Pteroclidae TaxID... [more]
A0A670JEP2_PODMU2.920e-3549.61Calmodulin-A-like n=1 Tax=Podarcis muralis TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1161contigP-wetherbeei_contig1161:2106..3458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJU6
PFAMsEF-hand_1,EF-hand_5,EF-hand_7
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.08e-50
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
DescriptionCalcium-binding protein
Cds size387
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185918.8512485-CDS-P-wetherbeei_contig1161:2105..21471683185918.8512485-CDS-P-wetherbeei_contig1161:2105..2147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1161 2106..2147 +
1683185918.8624432-CDS-P-wetherbeei_contig1161:2464..25861683185918.8624432-CDS-P-wetherbeei_contig1161:2464..2586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1161 2465..2586 +
1683185918.87148-CDS-P-wetherbeei_contig1161:3050..30991683185918.87148-CDS-P-wetherbeei_contig1161:3050..3099Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1161 3051..3099 +
1683185918.8803256-CDS-P-wetherbeei_contig1161:3284..34581683185918.8803256-CDS-P-wetherbeei_contig1161:3284..3458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1161 3285..3458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1161.2.1prot_P-wetherbeei_contig1161.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1161 2106..3458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1161.2.1

>prot_P-wetherbeei_contig1161.2.1 ID=prot_P-wetherbeei_contig1161.2.1|Name=mRNA_P-wetherbeei_contig1161.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
NFDKDGNGEIDEQELGIVMRSLGYSPTQQQLKDMMKTVDINGDGVIGFEE
FVVSVCEVETDFEKEIREAFKFFDKDGNGEITPTELASIMRGLGANLSDN
EIHMLLKEADSNGDGVINLDEFLRIMYS*
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mRNA from alignment at P-wetherbeei_contig1161:2106..3458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1161.2.1 ID=mRNA_P-wetherbeei_contig1161.2.1|Name=mRNA_P-wetherbeei_contig1161.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1353bp|location=Sequence derived from alignment at P-wetherbeei_contig1161:2106..3458+ (Phaeothamnion wetherbeei SAG_119_79)
AACTTTGACAAAGACGGCAATGGAGAAATTGACGAGCAAGAGGTGAGCCG TCTCCCTTCTTGATGAATCAATCGGTGTGGATGTGCGCGGCCGCCTCGGA TGCCGGCAGGCGGAACGACTTGGGAGACGGAGCGTGGCCAGCGGACGGCT GCCGCGAAATATCGGCTTTTAACTCTATCCATAGTAGCGGCGAGGAGTGC AGTCCCTTCTAGTGCTCCCCTCCCGTACCGTTTTCGAACTTCTCCGGTGC ATTTTCACCGGTGCTGACAAGTTTCCCGCCTCCATTTTTCCGGCCTTCTC TCATGCTGGCGCGGCTGCCTTGTTGCCTTTTTCCGGTTGCTCGTGAATGG CGGTTGCAGCTGGGCATCGTGATGCGATCGCTGGGCTACTCGCCGACGCA GCAGCAGCTGAAGGACATGATGAAGACAGTCGACATCAACGGCGATGGCG TCATCGGCTTCGAGGAGTTCGTGGTTAGTGTGTCATCTTAAACTGCATGT CTCACATCAGAATACACAGGAAGAGAACGCGTGGCCGAATTAAATCGCTG CTGATGGCTTTGCTGCGCTCGTCCTTTTTGGGGAGATGTGAGGGTTGAGA CACTGCTCCTTTGATGAAACCCCTTTGTGCAGTCCTCTGCCAAAAAGCAC GCCCTTTCCTCCTGTATACACTCTCTGACACGTTTCGCTCCACGCGTGGC CCGTCGTCTCCTTGTAACGGCGCCTCGCCCTCCGCGACGCGCTTTGTACA GAAAATGATGAAGAGGTTAGTCCAATACCATTCCATGGCCGTAGTTGTGT GCAAACATGACCACGTCAGGGAATTTGACTGGTGCGGAAATGAGGTGCTC TCTTTCCCCCGTATAGCAGCCGTCCTCTTCTGCCCTTGCTATCGGGATCT GACCTCGCCTTCCCCCTCTTCTTGCTCTCCGTGGTTGTACTGCAGATGCG AAGTGGAGACGGACTTTGAGAAGGAGATAAGGGAAGCCTTCAAGGTATCT GCCTCGTTTTTCGAACCCAGTTTCCCTATTGCTCTATCCGCCTCTCTCTT CTCCAAATGAATGGCTTTCCGGAAATGGCTTTCCTCATGAACACGTGGCC GCCCTGCAACTGCTCTTCCATTCCTCCATCGTCCACCGGAATGGAAACGG AAACGGAACGAAATCTCGCGGCGGAGCAGTTCTTCGACAAGGATGGGAAT GGAGAGATCACACCGACTGAGTTGGCCAGCATCATGCGGGGCCTCGGGGC GAACCTCTCGGACAACGAGATCCACATGCTGCTGAAGGAGGCCGACAGCA ACGGCGACGGCGTCATTAACCTCGACGAGTTTCTCCGCATCATGTACTCA TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1161:2106..3458+

>mRNA_P-wetherbeei_contig1161.2.1 ID=mRNA_P-wetherbeei_contig1161.2.1|Name=mRNA_P-wetherbeei_contig1161.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1161:2106..3458+ (Phaeothamnion wetherbeei SAG_119_79)
AACTTTGACAAAGACGGCAATGGAGAAATTGACGAGCAAGAGCTGGGCAT
CGTGATGCGATCGCTGGGCTACTCGCCGACGCAGCAGCAGCTGAAGGACA
TGATGAAGACAGTCGACATCAACGGCGATGGCGTCATCGGCTTCGAGGAG
TTCGTGGTTAGTGTATGCGAAGTGGAGACGGACTTTGAGAAGGAGATAAG
GGAAGCCTTCAAGTTCTTCGACAAGGATGGGAATGGAGAGATCACACCGA
CTGAGTTGGCCAGCATCATGCGGGGCCTCGGGGCGAACCTCTCGGACAAC
GAGATCCACATGCTGCTGAAGGAGGCCGACAGCAACGGCGACGGCGTCAT
TAACCTCGACGAGTTTCTCCGCATCATGTACTCATAG
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