mRNA_P-wetherbeei_contig1012.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1012.3.1
Unique NamemRNA_P-wetherbeei_contig1012.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1012.3.1 vs. uniprot
Match: D7FSY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.840e-21
Identity = 62/123 (50.41%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:  112 GPAQELFPAPLRQGVVCLAASPRRRCLVAVAAEGGAFFLEEGMRTDFPGPMYPAGYTLLDNNTAYAEAEDELDTVVTVGAGGEEV-RSLAREVVVPGKHEVTHEGDS---EDEDAADVNIVGD 468
            G   E    P R+GV+ LA SPRR  L+ +   G  +F EE ++TDFPGP YP+GY L+DNN  Y EAEDELDTVV  G GGE + ++ A EVVVP +HE   + DS   E E+  DV   GD
Sbjct:  390 GGQPERIDTPRREGVLALACSPRRPLLMFLCPTGEVYFKEEVLKTDFPGPWYPSGYVLIDNNVDYLEAEDELDTVVMTGPGGEVLSKTQAHEVVVPWQHEAVAQEDSSLGEKEEPVDVEGGGD 512
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BLAST of mRNA_P-wetherbeei_contig1012.3.1 vs. uniprot
Match: A0A6H5K8W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.050e-20
Identity = 55/107 (51.40%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:  112 GPAQELFPAPLRQGVVCLAASPRRRCLVAVAAEGGAFFLEEGMRTDFPGPMYPAGYTLLDNNTAYAEAEDELDTVVTVGAGGEEV-RSLAREVVVPGKHEVTHEGDS 429
            G   E    P R+GV+ LA SP R  L+ +   G  +F EE ++TDFPGP YP+GY L+DNN  Y EAEDELDTVV  G GGE + ++ A EVVVP +HE   + DS
Sbjct:  732 GGQPERIDTPRREGVLALACSPWRPLLMFLCPTGEVYFKEEVLKTDFPGPWYPSGYVLIDNNVDYLEAEDELDTVVMTGPGGEVLSKTQAHEVVVPWQHEAVAQEDS 838
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BLAST of mRNA_P-wetherbeei_contig1012.3.1 vs. uniprot
Match: A0A836CFM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.080e-16
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:  121 QELFPAPLRQGVVCLAASPR--RRCLVAVAAEGGAFFLEEGMRTDFPGPMYPAGYTLLDNNTAYAEAEDELDTVVTVGAGGEEVRSLAREVVVPGKHEVTHEGDSEDE-DAADVNIVG 465
            Q+L P P   G+V +  + R  +  L+ +  +G  +   E   +DFPGPMYP+GYT++ NN  YAE EDELD V++  A G+ V    REVV PG +EV  +GD++DE D + V+IVG
Sbjct:  375 QQLLPCPNGDGLVSMTLARRHGQPILIVITGQGRVYARRELSASDFPGPMYPSGYTVVRNNIEYAEREDELDLVLSADAAGQTVHVRTREVVEPGPNEVWLDGDADDETDGSGVDIVG 492
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BLAST of mRNA_P-wetherbeei_contig1012.3.1 vs. uniprot
Match: A0A7S2GJU8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJU8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.140e-5
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:  190 LVAVAAEGGAFFLEEGMRTDFPGPMYPAGYTLLDNNTAYAEAEDELDTV 336
            ++A++A G A+ +   M ++FPGPMYP G+ ++DNN  Y EAEDE D V
Sbjct:  206 VLALSALGDAYMVCVNMTSNFPGPMYPPGFVIVDNNRPYIEAEDEFDVV 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1012.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSY9_ECTSI1.840e-2150.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8W8_9PHAE3.050e-2051.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFM5_9STRA1.080e-1644.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GJU8_9STRA3.140e-548.98Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1012contigP-wetherbeei_contig1012:5732..6970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008876498.1
Model size994
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000159
EggNOG OGs2E6ZN@1|root,2SDMU@2759|Eukaryota
Cds size993
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185855.499441-CDS-P-wetherbeei_contig1012:5731..63161683185855.499441-CDS-P-wetherbeei_contig1012:5731..6316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1012 5732..6316 -
1683185855.5070226-CDS-P-wetherbeei_contig1012:6562..69701683185855.5070226-CDS-P-wetherbeei_contig1012:6562..6970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1012 6563..6970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1012.3.1prot_P-wetherbeei_contig1012.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1012 5732..6970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1012.3.1

>prot_P-wetherbeei_contig1012.3.1 ID=prot_P-wetherbeei_contig1012.3.1|Name=mRNA_P-wetherbeei_contig1012.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=331bp
AASGAAAAASAAVSGGGGSTSGGGGVSGGSGGGGGFAGPAQELFPAPLRQ
GVVCLAASPRRRCLVAVAAEGGAFFLEEGMRTDFPGPMYPAGYTLLDNNT
AYAEAEDELDTVVTVGAGGEEVRSLAREVVVPGKHEVTHEGDSEDEDAAD
VNIVGDDDGDDGNGEAADGRTGSGAFAAVYRRLEDFGPDELVAVPVDLSA
PPRHLDAAGGTAAGGGDWEGAALNGGAAAAAAATAADTESATAATPAPAA
GPPSLVARLLPPPAALQNGAVRPGQVTAAAAAAQAQRRATVASYLAEMEE
DRVRLTEEAERQEQRRLERERLKRKRKAQEA
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mRNA from alignment at P-wetherbeei_contig1012:5732..6970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1012.3.1 ID=mRNA_P-wetherbeei_contig1012.3.1|Name=mRNA_P-wetherbeei_contig1012.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1239bp|location=Sequence derived from alignment at P-wetherbeei_contig1012:5732..6970- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCAGCGGGGCGGCTGCCGCCGCTTCCGCTGCCGTGAGCGGCGGGGG
CGGTAGTACCAGCGGCGGCGGCGGCGTCAGCGGCGGCAGTGGTGGCGGCG
GCGGCTTTGCAGGGCCGGCCCAGGAGCTGTTCCCGGCGCCGCTCCGGCAG
GGCGTGGTCTGCCTGGCGGCGAGCCCGCGGCGACGTTGCCTGGTGGCCGT
CGCCGCGGAGGGCGGCGCGTTCTTTCTGGAGGAAGGTATGCGGACTGACT
TTCCGGGGCCGATGTACCCAGCCGGGTACACGCTGCTCGACAACAATACG
GCGTACGCCGAGGCGGAGGACGAGCTCGATACGGTGGTGACGGTCGGCGC
CGGCGGGGAGGAGGTCCGAAGCCTGGCGCGGGAGGTGGTGGTGCCGGGCA
AGCATGAGGTGAGCGAGCTCCCGGGGGTTAAGCGTAGATTCCGCGCCCCA
TTCGTTCGGTCCTTCCTTGCTCCCTTCCTTGGGAGCATTTACTTGTCGTT
TCCGCTTTTTGTAGGGCTGAGATTGCCGTTCCGGCTGCACTATGTTACGC
CTCCTGTTATCTGAGAAGACAGCAGCTTTTGATAAGAAGAGAAAGTTGTC
GGGAGCGAATTTTCTATCTATGATTACTTATCTTTTTGCATGTATGTGTT
TCAGGTGACTCATGAGGGCGATTCAGAAGATGAAGACGCCGCCGACGTCA
ACATCGTCGGTGATGACGACGGCGACGACGGCAACGGCGAGGCGGCCGAC
GGCCGTACTGGCAGTGGCGCTTTTGCCGCCGTGTACCGAAGGTTAGAAGA
CTTTGGGCCCGACGAACTGGTGGCGGTGCCGGTAGATCTTTCCGCGCCGC
CTCGGCATCTCGATGCCGCGGGCGGCACGGCTGCCGGCGGCGGCGACTGG
GAAGGAGCAGCGTTGAACGGTGGGGCTGCCGCTGCGGCGGCAGCGACGGC
GGCGGACACAGAGTCGGCGACGGCAGCGACGCCGGCGCCAGCTGCAGGGC
CGCCGTCGCTGGTGGCGCGGCTACTGCCGCCACCGGCGGCACTGCAGAAC
GGTGCCGTCCGGCCGGGGCAGGTGACGGCAGCGGCCGCCGCAGCGCAGGC
GCAACGGCGGGCGACGGTGGCGTCCTACCTGGCGGAAATGGAGGAAGACC
GCGTCCGGCTGACCGAGGAAGCCGAGCGGCAGGAGCAGCGGCGGCTGGAG
CGGGAGCGGCTCAAGCGGAAGCGCAAAGCGCAGGAAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1012:5732..6970-

>mRNA_P-wetherbeei_contig1012.3.1 ID=mRNA_P-wetherbeei_contig1012.3.1|Name=mRNA_P-wetherbeei_contig1012.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=993bp|location=Sequence derived from alignment at P-wetherbeei_contig1012:5732..6970- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCAGCGGGGCGGCTGCCGCCGCTTCCGCTGCCGTGAGCGGCGGGGG
CGGTAGTACCAGCGGCGGCGGCGGCGTCAGCGGCGGCAGTGGTGGCGGCG
GCGGCTTTGCAGGGCCGGCCCAGGAGCTGTTCCCGGCGCCGCTCCGGCAG
GGCGTGGTCTGCCTGGCGGCGAGCCCGCGGCGACGTTGCCTGGTGGCCGT
CGCCGCGGAGGGCGGCGCGTTCTTTCTGGAGGAAGGTATGCGGACTGACT
TTCCGGGGCCGATGTACCCAGCCGGGTACACGCTGCTCGACAACAATACG
GCGTACGCCGAGGCGGAGGACGAGCTCGATACGGTGGTGACGGTCGGCGC
CGGCGGGGAGGAGGTCCGAAGCCTGGCGCGGGAGGTGGTGGTGCCGGGCA
AGCATGAGGTGACTCATGAGGGCGATTCAGAAGATGAAGACGCCGCCGAC
GTCAACATCGTCGGTGATGACGACGGCGACGACGGCAACGGCGAGGCGGC
CGACGGCCGTACTGGCAGTGGCGCTTTTGCCGCCGTGTACCGAAGGTTAG
AAGACTTTGGGCCCGACGAACTGGTGGCGGTGCCGGTAGATCTTTCCGCG
CCGCCTCGGCATCTCGATGCCGCGGGCGGCACGGCTGCCGGCGGCGGCGA
CTGGGAAGGAGCAGCGTTGAACGGTGGGGCTGCCGCTGCGGCGGCAGCGA
CGGCGGCGGACACAGAGTCGGCGACGGCAGCGACGCCGGCGCCAGCTGCA
GGGCCGCCGTCGCTGGTGGCGCGGCTACTGCCGCCACCGGCGGCACTGCA
GAACGGTGCCGTCCGGCCGGGGCAGGTGACGGCAGCGGCCGCCGCAGCGC
AGGCGCAACGGCGGGCGACGGTGGCGTCCTACCTGGCGGAAATGGAGGAA
GACCGCGTCCGGCTGACCGAGGAAGCCGAGCGGCAGGAGCAGCGGCGGCT
GGAGCGGGAGCGGCTCAAGCGGAAGCGCAAAGCGCAGGAAGCA
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