mRNA_P-wetherbeei_contig11545.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11545.1.1
Unique NamemRNA_P-wetherbeei_contig11545.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11545.1.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 7.090e-8
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:    1 WEATNGRVEAALEKLDGVADVVMLTP--FGSAVGTTITNVTVANWSTSAVAPGDWTKTVAPGDALRFLDDVDNATELYLGVTALAYGNGTDETVFSLN 288
            ++AT+GRV+ AL+ + GV  V  L+P   G   G  I NVT+ N S S  A GD +KT+APGD   F        + Y  V++L Y   +D T  +LN
Sbjct: 11157 FDATDGRVDVALQAMIGVGKVATLSPVALGGTGGVDIGNVTLFNNSASVEAAGDLSKTLAPGDTAVF----GIVEQQYFEVSSLTYSAVSDVTTLALN 11250
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BLAST of mRNA_P-wetherbeei_contig11545.1.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-7
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:    1 WEATNGRVEAALEKLDGVADVVMLTP--FGSAVGTTITNVTVANWSTSAVAPGDWTKTVAPGDALRFLDDVDNATELYLGVTALAYGNGTDETVFSLN 288
            ++AT+GRV+ AL+ + GV  V  L+P   G + G  I NVT+ N S    A GD +KT+APGD   F        + Y  V++L+Y   +D T   LN
Sbjct: 3682 FDATDGRVDVALQAMIGVGKVATLSPVALGGSGGVDIGNVTLFNNSALVEAAGDLSKTLAPGDTAVF----GIVEQQYFEVSSLSYSEVSDVTTLILN 3775
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11545.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA6_ECTSI7.090e-839.80Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
A0A6H5JYH1_9PHAE3.370e-738.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11545contigP-wetherbeei_contig11545:3..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNA6
PFAMsFilamin,PA14,fn3
Model size289
Max annot lvl2759|Eukaryota
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-08
EggNOG OGsKOG0613@1|root,KOG0613@2759|Eukaryota
EC2.7.11.1
Descriptioncytoskeletal protein binding
Cds size288
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.2099826-CDS-P-wetherbeei_contig11545:2..2901683185916.2099826-CDS-P-wetherbeei_contig11545:2..290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11545 3..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11545.1.1prot_P-wetherbeei_contig11545.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11545 3..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11545.1.1

>prot_P-wetherbeei_contig11545.1.1 ID=prot_P-wetherbeei_contig11545.1.1|Name=mRNA_P-wetherbeei_contig11545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
WEATNGRVEAALEKLDGVADVVMLTPFGSAVGTTITNVTVANWSTSAVAP
GDWTKTVAPGDALRFLDDVDNATELYLGVTALAYGNGTDETVFSLN
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mRNA from alignment at P-wetherbeei_contig11545:3..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11545.1.1 ID=mRNA_P-wetherbeei_contig11545.1.1|Name=mRNA_P-wetherbeei_contig11545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig11545:3..290+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGAGGCGACCAACGGGCGGGTGGAGGCGGCGCTGGAGAAGCTCGACGG
CGTGGCGGATGTTGTTATGCTGACGCCGTTCGGCAGCGCTGTCGGCACGA
CGATCACTAACGTCACCGTGGCAAACTGGTCGACGTCGGCGGTGGCACCG
GGCGACTGGACTAAGACGGTGGCGCCGGGCGACGCTTTGCGCTTCTTGGA
TGACGTTGACAATGCCACGGAGCTCTATCTGGGCGTCACGGCGCTGGCGT
ACGGCAACGGCACGGACGAAACCGTCTTCAGCCTCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11545:3..290+

>mRNA_P-wetherbeei_contig11545.1.1 ID=mRNA_P-wetherbeei_contig11545.1.1|Name=mRNA_P-wetherbeei_contig11545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig11545:3..290+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGAGGCGACCAACGGGCGGGTGGAGGCGGCGCTGGAGAAGCTCGACGG
CGTGGCGGATGTTGTTATGCTGACGCCGTTCGGCAGCGCTGTCGGCACGA
CGATCACTAACGTCACCGTGGCAAACTGGTCGACGTCGGCGGTGGCACCG
GGCGACTGGACTAAGACGGTGGCGCCGGGCGACGCTTTGCGCTTCTTGGA
TGACGTTGACAATGCCACGGAGCTCTATCTGGGCGTCACGGCGCTGGCGT
ACGGCAACGGCACGGACGAAACCGTCTTCAGCCTCAAC
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