mRNA_P-wetherbeei_contig11532.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11532.1.1
Unique NamemRNA_P-wetherbeei_contig11532.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11532.1.1 vs. uniprot
Match: D7G1X1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:   14 LPEGLMLTHVRALHEDKDALCSLCCERQYIGRTLVFADSMAGARRRTVLLALLWLAVAALLHAQMQQWQRRCNLDLF 244
            LP  L L  +++L  +KD    L C   Y GRTL+F +++A ARR + LL  L +  A  LHAQMQQ QR  +LD F
Sbjct:  507 LPSTLKLCSIKSLQMEKDVHAYLFCA-MYPGRTLIFVNAIAIARRLSALLCALSVP-ATPLHAQMQQRQRLKSLDRF 581
[Close]
BLAST of mRNA_P-wetherbeei_contig11532.1.1 vs. uniprot
Match: A0A6H5KFI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI4_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.570e-5
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:   14 LPEGLMLTHVRALHEDKDALCSLCCERQYIGRTLVFADSMAGARRRTVLLALLWLAVAALLHAQMQQWQRRCNLDLF 244
            LP  L L  +++L  +KD    L C   Y GRTL+F +++A ARR + LL  L +  A  LHAQMQQ QR  +LD F
Sbjct:  672 LPSTLKLCSIKSLQMEKDVHAYLFCA-MYPGRTLIFVNAIAIARRLSALLCALNVP-ATPLHAQMQQRQRLKSLDRF 746
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11532.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1X1_ECTSI1.140e-545.45DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KFI4_9PHAE1.570e-545.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11532contigP-wetherbeei_contig11532:1890..2139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog84751.XP_007876301.1
Preferred nameMAK5
PFAMsDEAD,Helicase_C
Model size250
Max annot lvl4751|Fungi
KEGG koko:K14805
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Exons1
Evalue1.67e-08
EggNOG OGsCOG0513@1|root,KOG0347@2759|Eukaryota,38CPC@33154|Opisthokonta,3NUN6@4751|Fungi,3UZR3@5204|Basidiomycota,3N3JR@452284|Ustilaginomycotina
EC3.6.4.13
Descriptionhelicase superfamily c-terminal domain
Cds size246
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.8022866-CDS-P-wetherbeei_contig11532:1889..21351683185915.8022866-CDS-P-wetherbeei_contig11532:1889..2135Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11532 1890..2135 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.8111176-UTR-P-wetherbeei_contig11532:2135..21391683185915.8111176-UTR-P-wetherbeei_contig11532:2135..2139Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11532 2136..2139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11532.1.1prot_P-wetherbeei_contig11532.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11532 1890..2135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11532.1.1

>prot_P-wetherbeei_contig11532.1.1 ID=prot_P-wetherbeei_contig11532.1.1|Name=mRNA_P-wetherbeei_contig11532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MLTLPEGLMLTHVRALHEDKDALCSLCCERQYIGRTLVFADSMAGARRRT
VLLALLWLAVAALLHAQMQQWQRRCNLDLFWE
back to top

mRNA from alignment at P-wetherbeei_contig11532:1890..2139-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11532.1.1 ID=mRNA_P-wetherbeei_contig11532.1.1|Name=mRNA_P-wetherbeei_contig11532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=250bp|location=Sequence derived from alignment at P-wetherbeei_contig11532:1890..2139- (Phaeothamnion wetherbeei SAG_119_79)
GCCGATGCTGACATTACCAGAAGGGCTCATGCTGACGCACGTGCGGGCGC
TGCATGAGGACAAGGACGCCCTGTGCTCCCTCTGCTGTGAACGGCAGTAC
ATCGGGCGGACCCTCGTCTTTGCCGACTCCATGGCCGGCGCCCGCCGGCG
GACGGTGCTGCTCGCGCTGCTCTGGCTGGCCGTGGCGGCGCTCCTCCACG
CGCAGATGCAGCAGTGGCAGCGGCGGTGCAACCTGGACCTGTTCTGGGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11532:1890..2139-

>mRNA_P-wetherbeei_contig11532.1.1 ID=mRNA_P-wetherbeei_contig11532.1.1|Name=mRNA_P-wetherbeei_contig11532.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig11532:1890..2139- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACATTACCAGAAGGGCTCATGCTGACGCACGTGCGGGCGCTGCA
TGAGGACAAGGACGCCCTGTGCTCCCTCTGCTGTGAACGGCAGTACATCG
GGCGGACCCTCGTCTTTGCCGACTCCATGGCCGGCGCCCGCCGGCGGACG
GTGCTGCTCGCGCTGCTCTGGCTGGCCGTGGCGGCGCTCCTCCACGCGCA
GATGCAGCAGTGGCAGCGGCGGTGCAACCTGGACCTGTTCTGGGAG
back to top