mRNA_P-wetherbeei_contig11524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11524.1.1
Unique NamemRNA_P-wetherbeei_contig11524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11524.1.1 vs. uniprot
Match: A0A6H5JN10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN10_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.660e-9
Identity = 55/132 (41.67%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:  670 DEERLLQDEAARLEREMQALHHRRVQVSLTKLEQQLRADADRRRHQREASVAAEVDAAAAALRAGCCRCAAAAAAFREELRGRVERLCAIYEEVSARAEALEAKCDRGEAELRREAARRLAAAAEGDDAAVR 1065
            +EER LQ++A++LE EM A+  RR++V L K+EQQL+ +A  R  QREA +  EV+ +  AL A      +  AA ++ LRG++E+L  +YEEVS R + LE    + E+EL+  A      A E +D  VR
Sbjct:  110 EEERRLQEKASKLELEMSAVQSRRLEVYLVKVEQQLQEEAAMRLVQREARINLEVERSCKALAAERDERVSGVAAVKDNLRGKLEQLSIMYEEVSTRMDNLEKAYAQAESELKDRALADQRKAVEREDRGVR 241
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BLAST of mRNA_P-wetherbeei_contig11524.1.1 vs. uniprot
Match: D7G239_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G239_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.360e-8
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = 1 
Query:  676 ERLLQDEAARLEREMQALHHRRVQVSLTKLEQQLRADADRRRHQREASVAAEVDAAAAALRAGCCRCAAAAAAFREELRGRVERLCAIYEEVSARAEALEAKCDRGEAELRREAARRLAAAAEGDDAAVR 1065
            ER LQ++A++LE EM A+  RR++V L K+EQQL+ +A  R  QREA +  EV+ +  AL A      +  AA ++ LRG++E+L  +YEEVS R   LE    + E EL+  A      AAE +D  VR
Sbjct:  255 ERRLQEKASKLELEMSAVQSRRLEVYLVKVEQQLQEEAAMRLVQREARINLEVERSCKALAAERDERVSGVAAVKDNLRGKLEQLSTMYEEVSTRMNNLEKAYAQAENELKDRALADQRKAAEREDRGVR 384
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN10_9PHAE4.660e-941.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G239_ECTSI3.360e-842.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11524contigP-wetherbeei_contig11524:319..2141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1440
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002240.1
Cds size1266
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.3483763-UTR-P-wetherbeei_contig11524:318..4741683185915.3483763-UTR-P-wetherbeei_contig11524:318..474Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11524 319..474 -
1683185915.3762496-UTR-P-wetherbeei_contig11524:2123..21411683185915.3762496-UTR-P-wetherbeei_contig11524:2123..2141Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11524 2124..2141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.3601866-CDS-P-wetherbeei_contig11524:474..10111683185915.3601866-CDS-P-wetherbeei_contig11524:474..1011Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11524 475..1011 -
1683185915.367987-CDS-P-wetherbeei_contig11524:1394..21231683185915.367987-CDS-P-wetherbeei_contig11524:1394..2123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11524 1395..2123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11524.1.1prot_P-wetherbeei_contig11524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11524 475..2123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11524.1.1

>prot_P-wetherbeei_contig11524.1.1 ID=prot_P-wetherbeei_contig11524.1.1|Name=mRNA_P-wetherbeei_contig11524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=422bp
MRRAQVKCDLLPPPPRKQTHSREKPAWNSSTKVFGKPLATAGGSSGPEAA
SLEIGLASSSTDAAPSREEIRCMIERIKERADAAREAAVEAKTDANGGRN
ATLSNAGRSRSCAKAGGSTGTAALAKNVCASRYAGGLPQPSRERRLNASS
SAAVAQAAIGAAATAAATTAAATTAAAATPATVAAFNATTSSAAGSSLTR
DTAASNGSMRRPAELGLDEERLLQDEAARLEREMQALHHRRVQVSLTKLE
QQLRADADRRRHQREASVAAEVDAAAAALRAGCCRCAAAAAAFREELRGR
VERLCAIYEEVSARAEALEAKCDRGEAELRREAARRLAAAAEGDDAAVRA
ELAAARRRELGGLRESRPRGGGGDIGYRDGWMEDNGGGHGGSGGGDSRSG
DNGNGSGGGGGGNDDDARRER*
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mRNA from alignment at P-wetherbeei_contig11524:319..2141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11524.1.1 ID=mRNA_P-wetherbeei_contig11524.1.1|Name=mRNA_P-wetherbeei_contig11524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1823bp|location=Sequence derived from alignment at P-wetherbeei_contig11524:319..2141- (Phaeothamnion wetherbeei SAG_119_79)
AGCCCGAGAAACCTGGGAATGAGACGTGCGCAGGTAAAGTGCGATCTTCT
CCCGCCGCCTCCGAGAAAACAGACACATTCTCGCGAGAAACCTGCTTGGA
ATAGCTCTACCAAAGTTTTTGGCAAGCCCCTTGCGACCGCCGGCGGCAGC
AGCGGGCCGGAAGCGGCCTCATTAGAGATTGGCTTGGCCAGCTCTTCGAC
GGACGCTGCCCCATCTCGCGAGGAGATTCGCTGTATGATCGAGCGCATCA
AGGAGCGTGCCGATGCCGCCCGCGAAGCTGCCGTAGAGGCCAAAACGGAT
GCCAATGGCGGCAGGAATGCAACCTTGTCAAATGCTGGGCGCAGCCGCTC
GTGTGCTAAAGCGGGCGGCTCCACGGGGACAGCCGCGCTCGCCAAGAATG
TGTGCGCGTCTCGCTACGCAGGCGGCTTGCCGCAGCCATCGCGGGAACGG
CGATTAAACGCGTCTAGCAGTGCAGCGGTGGCACAAGCGGCAATAGGGGC
GGCAGCAACAGCAGCGGCCACAACAGCAGCGGCCACAACAGCAGCGGCTG
CAACACCAGCGACAGTAGCGGCATTTAATGCCACTACAAGTAGCGCCGCG
GGCAGCTCTCTGACGCGCGATACCGCCGCCAGCAATGGATCGATGAGAAG
ACCAGCCGAATTGGGATTGGATGAGGAGAGGCTGCTGCAGGATGAGGCGG
CCCGACTCGAACGTGAGATGCAAGCACTGCACCATCGAAGAGTGCAGGTG
CGTTTGCTTGAAAGGAGCCGTGTGTCCTCTCTGCAGCTCCGTTCGAAACC
AAGCTTTTCCTTTTCATTCTTCTCATCTTGGCCTCTTTTTTTGGCCTGCA
ACACCCTTTCTTCTTCTCACCCAAGATTTAAAGGGATTTTCTAAAAACGG
CTAGGTGTTAGAAAGTTCTAGCCTGTGGATTTGGCAGTTTTGGTATTGTA
GGGCCATCGGAGCCGGTCACGGCGGCGTTCAGAGGCTAAGTATCAGATTA
TTACTTTCATTTTTGTATGGTCGTGTGTTACGTAGCCAATGGGAGCGACA
GAATGAGGACCTGCTTCAGACGCTATTTTTCTTTCCCTTGCGCCTTTTCT
TCTGTTTTGGTGCCGCGTTGCTCCCACCAGGTGTCTTTGACCAAACTGGA
GCAGCAGCTGCGCGCCGACGCCGACCGCCGGCGCCACCAGCGGGAGGCCT
CCGTCGCCGCCGAGGTCGATGCCGCCGCCGCCGCCCTCCGCGCCGGCTGC
TGCCGTTGTGCCGCCGCCGCCGCGGCGTTTCGGGAAGAGCTTCGTGGACG
CGTCGAGCGGCTCTGTGCCATCTACGAGGAGGTTTCGGCCCGCGCAGAGG
CGTTGGAGGCGAAGTGCGACAGGGGCGAGGCGGAGCTGCGGCGGGAGGCA
GCGCGGCGGCTGGCGGCGGCGGCGGAGGGCGACGATGCAGCAGTCCGGGC
CGAGCTGGCGGCAGCGAGGCGGCGGGAGCTGGGAGGTTTGAGAGAAAGTC
GTCCGAGAGGTGGCGGCGGCGACATCGGTTATCGCGACGGCTGGATGGAA
GACAATGGCGGCGGTCACGGTGGCAGTGGTGGCGGCGACTCGAGAAGTGG
CGACAATGGAAACGGCAGCGGCGGTGGCGGCGGTGGCAATGATGACGACG
CTCGGAGAGAACGATAGGATCACATGGGCAGCGAAAGCGAAGCAAAAGAT
TGATGCCGGCATTAACAGCTCTTGTGCGTGCCAGCAGATACCTGTTTATA
GACAGATCCAAAGCGACGAAGCAAGGCACGGAAGACCCTGTGCACCACGA
GGTCAATAATTAACCTTCTTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11524:319..2141-

>mRNA_P-wetherbeei_contig11524.1.1 ID=mRNA_P-wetherbeei_contig11524.1.1|Name=mRNA_P-wetherbeei_contig11524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1266bp|location=Sequence derived from alignment at P-wetherbeei_contig11524:319..2141- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACGTGCGCAGGTAAAGTGCGATCTTCTCCCGCCGCCTCCGAGAAA
ACAGACACATTCTCGCGAGAAACCTGCTTGGAATAGCTCTACCAAAGTTT
TTGGCAAGCCCCTTGCGACCGCCGGCGGCAGCAGCGGGCCGGAAGCGGCC
TCATTAGAGATTGGCTTGGCCAGCTCTTCGACGGACGCTGCCCCATCTCG
CGAGGAGATTCGCTGTATGATCGAGCGCATCAAGGAGCGTGCCGATGCCG
CCCGCGAAGCTGCCGTAGAGGCCAAAACGGATGCCAATGGCGGCAGGAAT
GCAACCTTGTCAAATGCTGGGCGCAGCCGCTCGTGTGCTAAAGCGGGCGG
CTCCACGGGGACAGCCGCGCTCGCCAAGAATGTGTGCGCGTCTCGCTACG
CAGGCGGCTTGCCGCAGCCATCGCGGGAACGGCGATTAAACGCGTCTAGC
AGTGCAGCGGTGGCACAAGCGGCAATAGGGGCGGCAGCAACAGCAGCGGC
CACAACAGCAGCGGCCACAACAGCAGCGGCTGCAACACCAGCGACAGTAG
CGGCATTTAATGCCACTACAAGTAGCGCCGCGGGCAGCTCTCTGACGCGC
GATACCGCCGCCAGCAATGGATCGATGAGAAGACCAGCCGAATTGGGATT
GGATGAGGAGAGGCTGCTGCAGGATGAGGCGGCCCGACTCGAACGTGAGA
TGCAAGCACTGCACCATCGAAGAGTGCAGGTGTCTTTGACCAAACTGGAG
CAGCAGCTGCGCGCCGACGCCGACCGCCGGCGCCACCAGCGGGAGGCCTC
CGTCGCCGCCGAGGTCGATGCCGCCGCCGCCGCCCTCCGCGCCGGCTGCT
GCCGTTGTGCCGCCGCCGCCGCGGCGTTTCGGGAAGAGCTTCGTGGACGC
GTCGAGCGGCTCTGTGCCATCTACGAGGAGGTTTCGGCCCGCGCAGAGGC
GTTGGAGGCGAAGTGCGACAGGGGCGAGGCGGAGCTGCGGCGGGAGGCAG
CGCGGCGGCTGGCGGCGGCGGCGGAGGGCGACGATGCAGCAGTCCGGGCC
GAGCTGGCGGCAGCGAGGCGGCGGGAGCTGGGAGGTTTGAGAGAAAGTCG
TCCGAGAGGTGGCGGCGGCGACATCGGTTATCGCGACGGCTGGATGGAAG
ACAATGGCGGCGGTCACGGTGGCAGTGGTGGCGGCGACTCGAGAAGTGGC
GACAATGGAAACGGCAGCGGCGGTGGCGGCGGTGGCAATGATGACGACGC
TCGGAGAGAACGATAG
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