mRNA_P-wetherbeei_contig11508.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11508.1.1
Unique NamemRNA_P-wetherbeei_contig11508.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11508.1.1 vs. uniprot
Match: A0A7S2YMT1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMT1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.280e-7
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  127 IDEENFLQPEWRSLDRRLRNRRTREVGE--GPRGRSNLKKSEEDFWLEAGLY 276
            ID+E+ LQP W+ ++ R++NRR R   E  G  GR+N+KK++E+ WL+ GLY
Sbjct:   63 IDDEDELQPMWKGMESRVKNRRPRTRAETGGKTGRTNIKKTDEEMWLKEGLY 114
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BLAST of mRNA_P-wetherbeei_contig11508.1.1 vs. uniprot
Match: A0A7S2IA71_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IA71_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.380e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  127 IDEENFLQPEWRSLDRRLRNRRTREVGE--GPRGRSNLKKSEEDFWLEAGLY 276
            I  ++ LQP WR ++ R+  RRT  + E  G  GR N++K+EED WLEAG+Y
Sbjct:   97 ISSDDELQPMWRDMESRVLKRRTYTIAESGGKVGRRNIRKTEEDVWLEAGMY 148
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BLAST of mRNA_P-wetherbeei_contig11508.1.1 vs. uniprot
Match: K0RA15_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RA15_THAOC)

HSP 1 Score: 50.4 bits (119), Expect = 5.040e-5
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:  127 IDEENFLQPEWRSLDRRLRNRR--TREVGEGPRGRSNLKKSEEDFWLEAGLYVPHPARPGLPDNEWSEKAG 333
            ID    +QP WR ++ R+  RR  T E  +G  GR N++KS+ED WL+AG+Y          D+   ++ G
Sbjct:  102 IDNYEDVQPAWREMESRVTKRRSLTLEERQGVSGRRNVRKSDEDLWLQAGVYNSSKEEASNSDSNDDQEEG 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11508.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S2YMT1_9STRA7.280e-748.08Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2IA71_9STRA1.380e-548.08Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0RA15_THAOC5.040e-536.62Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11508contigP-wetherbeei_contig11508:2..381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0RA15
Model size380
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.54e-05
EggNOG OGs2BY4Z@1|root,2TAAW@2759|Eukaryota,2XHBS@2836|Bacillariophyta
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-00_001090.1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.6341262-CDS-P-wetherbeei_contig11508:1..3401683185914.6341262-CDS-P-wetherbeei_contig11508:1..340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11508 2..340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.6505625-UTR-P-wetherbeei_contig11508:340..3811683185914.6505625-UTR-P-wetherbeei_contig11508:340..381Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11508 341..381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11508.1.1prot_P-wetherbeei_contig11508.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11508 2..340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11508.1.1

>prot_P-wetherbeei_contig11508.1.1 ID=prot_P-wetherbeei_contig11508.1.1|Name=mRNA_P-wetherbeei_contig11508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
APRRRITPSLLARRWHWDGGRVRDWTVDNKGGDVQEGEGGASIDEENFLQ
PEWRSLDRRLRNRRTREVGEGPRGRSNLKKSEEDFWLEAGLYVPHPARPG
LPDNEWSEKAGN*
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mRNA from alignment at P-wetherbeei_contig11508:2..381+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11508.1.1 ID=mRNA_P-wetherbeei_contig11508.1.1|Name=mRNA_P-wetherbeei_contig11508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=380bp|location=Sequence derived from alignment at P-wetherbeei_contig11508:2..381+ (Phaeothamnion wetherbeei SAG_119_79)
GCACCGCGTCGACGCATAACTCCCTCTCTTCTCGCACGGCGCTGGCACTG
GGACGGTGGCCGCGTTCGGGACTGGACTGTTGATAACAAGGGCGGCGACG
TTCAGGAAGGCGAAGGTGGCGCGAGCATCGACGAGGAGAATTTTCTCCAG
CCGGAATGGCGCTCGCTCGACCGCCGCCTGCGCAACCGGAGGACGCGGGA
GGTCGGAGAGGGGCCGCGGGGCCGGTCGAACCTGAAGAAGAGCGAGGAGG
ACTTCTGGCTGGAGGCCGGGCTTTACGTTCCGCACCCGGCACGCCCGGGC
CTGCCGGACAATGAATGGAGTGAGAAGGCCGGCAACTGATGGACGTTCTG
GATGTATGTAATGTATATACCAAATACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11508:2..381+

>mRNA_P-wetherbeei_contig11508.1.1 ID=mRNA_P-wetherbeei_contig11508.1.1|Name=mRNA_P-wetherbeei_contig11508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig11508:2..381+ (Phaeothamnion wetherbeei SAG_119_79)
GCACCGCGTCGACGCATAACTCCCTCTCTTCTCGCACGGCGCTGGCACTG
GGACGGTGGCCGCGTTCGGGACTGGACTGTTGATAACAAGGGCGGCGACG
TTCAGGAAGGCGAAGGTGGCGCGAGCATCGACGAGGAGAATTTTCTCCAG
CCGGAATGGCGCTCGCTCGACCGCCGCCTGCGCAACCGGAGGACGCGGGA
GGTCGGAGAGGGGCCGCGGGGCCGGTCGAACCTGAAGAAGAGCGAGGAGG
ACTTCTGGCTGGAGGCCGGGCTTTACGTTCCGCACCCGGCACGCCCGGGC
CTGCCGGACAATGAATGGAGTGAGAAGGCCGGCAACTGA
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