mRNA_P-wetherbeei_contig11441.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11441.4.1
Unique NamemRNA_P-wetherbeei_contig11441.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: A0A835Z0Q7_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.570e-14
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   23 NDGRLTAVLWATREQVALATLYG-QVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNYV 253
            +D       WAT++QV  A  +G  V+ QD TFGTN++GL   +IV V+G+ +TR+ CQ  + +EDT AF+W F +YV
Sbjct:   72 DDCSFKRAFWATQDQVERAMEFGLDVIQQDCTFGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYV 149          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: A0A836CA74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA74_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.680e-14
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   23 NDGRLTAVLWATREQVALATLYG-QVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNYV 253
            +D       WAT++QV  A  +G  V+ QD TFGTN++GL   +IV V+G+ +TR+ CQ  + +EDT AF+W F +YV
Sbjct:  197 DDCSFKRAFWATQDQVERAMEFGLDVIQQDCTFGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYV 274          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: A0A835Z7W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.360e-13
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   23 NDGRLTAVLWATREQVALATLYG-QVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNYV 253
            +D       WAT++QV  A  +G  V+ QD T GTN++GL   +IV V+G+ +TR+ CQ  + +EDT AF+W F +YV
Sbjct:  249 DDCSFKRAFWATQDQVERAMEFGLDVIQQDCTLGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYV 326          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: A0A4S8LN89_DENBC (MULE domain-containing protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8LN89_DENBC)

HSP 1 Score: 68.6 bits (166), Expect = 1.290e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNYVD 256
            D  G +T +LW + EQV LAT+YG V+I DN++G      P F ++ +DG   +R +   F R E+   FTW   +Y+D
Sbjct:  160 DEHGTVTGILWQSPEQVKLATVYGDVIICDNSYGRVDNLYPLFTMIVIDGFNCSRNILYCFHRNENIETFTWILQSYLD 238          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: A0A6P5RNT9_PRUAV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RNT9_PRUAV)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-11
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNY 250
            D++ RLT   WA          YG VV+ D TF TNR+GLPF  ++ V+  G+T V+   F+ KE T +F W F+ +
Sbjct:   61 DSNDRLTRCFWADATSRRAYGFYGDVVVLDTTFNTNRYGLPFAPMLGVNNHGQTIVLACAFLSKETTESFIWMFEEF 137          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: UPI0014829422 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Prunus dulcis TaxID=3755 RepID=UPI0014829422)

HSP 1 Score: 67.4 bits (163), Expect = 2.910e-11
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNY 250
            D++ RLT   WA          YG VV+ D TF TNR+GLPF  ++ V+  G+T V+   F+ KE T +F W F+ +
Sbjct:   61 DSNDRLTRCFWADATSRRAYGFYGDVVVLDTTFNTNRYGLPFAPMLGVNNHGQTIVLACAFLSKETTESFIWMFEEF 137          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: UPI0009AB7934 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB7934)

HSP 1 Score: 67.4 bits (163), Expect = 3.290e-11
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNY 250
            D++ RLT   WA          YG VV+ D TF TNR+GLPF  I+ V+  G+T V+   F+ KE T +F W F+ +
Sbjct:   98 DSNDRLTRCFWADATSRRGYGFYGDVVVLDTTFNTNRYGLPFAPILGVNNHGQTIVLACAFLSKETTESFIWMFEEF 174          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: UPI00148296AA (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Prunus dulcis TaxID=3755 RepID=UPI00148296AA)

HSP 1 Score: 67.4 bits (163), Expect = 3.330e-11
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNY 250
            D++ RLT   WA          YG VV+ D TF TNR+GLPF  ++ V+  G+T V+   F+ KE T +F W F+ +
Sbjct:   61 DSNDRLTRCFWADATSRRAYGFYGDVVVLDTTFNTNRYGLPFAPMLGVNNHGQTIVLACAFLSKETTESFIWMFEEF 137          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: A0A4Y1S164_PRUDU (Protein FAR1-RELATED SEQUENCE n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1S164_PRUDU)

HSP 1 Score: 67.4 bits (163), Expect = 3.350e-11
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNY 250
            D++ RLT   WA          YG VV+ D TF TNR+GLPF  ++ V+  G+T V+   F+ KE T +F W F+ +
Sbjct:  289 DSNDRLTRCFWADATSRRAYGFYGDVVVLDTTFNTNRYGLPFAPMLGVNNHGQTIVLACAFLSKETTESFIWMFEEF 365          
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Match: UPI00046DB766 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 n=2 Tax=Prunus mume TaxID=102107 RepID=UPI00046DB766)

HSP 1 Score: 66.6 bits (161), Expect = 6.210e-11
Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 2
Query:   20 DNDGRLTAVLWATREQVALATLYGQVVIQDNTFGTNRFGLPFFVIVCVDGEGRTRVVCQGFMRKEDTAAFTWAFDNY 250
            D  GRLT + WA          YG V++ D T+ TNR+GL F  ++ V+  G+T ++   F+ KE T +F W FD +
Sbjct:   51 DPSGRLTNLFWADSTSRRAYKFYGDVIVFDTTYNTNRYGLVFAPLIGVNNHGQTIILACAFLSKETTESFVWLFDQF 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11441.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0Q7_9STRA6.570e-1444.87SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CA74_9STRA6.680e-1444.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7W2_9STRA4.360e-1343.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4S8LN89_DENBC1.290e-1139.24MULE domain-containing protein n=1 Tax=Dendrothele... [more]
A0A6P5RNT9_PRUAV1.630e-1140.26Protein FAR1-RELATED SEQUENCE n=1 Tax=Prunus avium... [more]
UPI00148294222.910e-1140.26protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Prunu... [more]
UPI0009AB79343.290e-1141.56protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Prunu... [more]
UPI00148296AA3.330e-1140.26protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Prunu... [more]
A0A4Y1S164_PRUDU3.350e-1140.26Protein FAR1-RELATED SEQUENCE n=1 Tax=Prunus dulci... [more]
UPI00046DB7666.210e-1137.66protein FAR1-RELATED SEQUENCE 5-like isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11441contigP-wetherbeei_contig11441:1736..2154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.7911723-CDS-P-wetherbeei_contig11441:1735..19121683185911.7911723-CDS-P-wetherbeei_contig11441:1735..1912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11441 1736..1912 +
1683185911.8014677-CDS-P-wetherbeei_contig11441:2073..21541683185911.8014677-CDS-P-wetherbeei_contig11441:2073..2154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11441 2074..2154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11441.4.1prot_P-wetherbeei_contig11441.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11441 1736..2154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11441.4.1

>prot_P-wetherbeei_contig11441.4.1 ID=prot_P-wetherbeei_contig11441.4.1|Name=mRNA_P-wetherbeei_contig11441.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
RTCSPRRQRRPPDCGALGDEGAGGTGHTVWPGRHPGQHFRYKQIWASVLC
HRLRGRRGQDQGRLPRLHAQGGYRGVHLGLRQLRGL
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mRNA from alignment at P-wetherbeei_contig11441:1736..2154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11441.4.1 ID=mRNA_P-wetherbeei_contig11441.4.1|Name=mRNA_P-wetherbeei_contig11441.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=419bp|location=Sequence derived from alignment at P-wetherbeei_contig11441:1736..2154+ (Phaeothamnion wetherbeei SAG_119_79)
CGAACGTGCTCACCTCGTCGACAACGACGGCCGCCTGACTGCGGTGCTCT GGGCGACGAGGGAGCAGGTGGCACTGGCCACACTGTATGGCCAGGTCGTC ATCCAGGACAACACTTTCGGTACAAACAGATTTGGGCTTCCGTTCTTTGT CATCGTCTGCGTGGACGGCGAGGGCAGGTTAGGGCTGTTGCAGCGATTAT ACGCTGCGCCCGACCACATTGTTGCTTCGAAGCGTATGTGTGTGTTGAAC TTGCCTGTGCCTGTTCCTCCTGTCCAGCCATGTTACTGCCAGAGTTTTGT GACCGCTTTCGACGGTACTTTCATTTCATCGTGTACAGGACCAGGGTCGT CTGCCAAGGCTTCATGCGCAAGGAGGATACCGCGGCGTTCACTTGGGCCT TCGACAACTACGTGGATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11441:1736..2154+

>mRNA_P-wetherbeei_contig11441.4.1 ID=mRNA_P-wetherbeei_contig11441.4.1|Name=mRNA_P-wetherbeei_contig11441.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig11441:1736..2154+ (Phaeothamnion wetherbeei SAG_119_79)
CGAACGTGCTCACCTCGTCGACAACGACGGCCGCCTGACTGCGGTGCTCT
GGGCGACGAGGGAGCAGGTGGCACTGGCCACACTGTATGGCCAGGTCGTC
ATCCAGGACAACACTTTCGGTACAAACAGATTTGGGCTTCCGTTCTTTGT
CATCGTCTGCGTGGACGGCGAGGGCAGGACCAGGGTCGTCTGCCAAGGCT
TCATGCGCAAGGAGGATACCGCGGCGTTCACTTGGGCCTTCGACAACTAC
GTGGATTG
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