mRNA_P-wetherbeei_contig10.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10.3.2
Unique NamemRNA_P-wetherbeei_contig10.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10.3.2 vs. uniprot
Match: A0A7S2R4S1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4S1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.650e-9
Identity = 37/65 (56.92%), Postives = 39/65 (60.00%), Query Frame = 1 
Query: 2494 VPLIVLPLRLPQPRHTTWVGMPSNHRADDDPVLRYVPYFGDNDHGALFPVVKMDGMDVSAYDMVP 2688
            VP   LPL LP PR T W  +  N RADDDPVLRYVPYFGD D           G+DVS YD VP
Sbjct:  142 VPACRLPLVLPLPRSTVWTSIMLNWRADDDPVLRYVPYFGDEDQT---------GLDVSFYDSVP 197
[Close]
BLAST of mRNA_P-wetherbeei_contig10.3.2 vs. uniprot
Match: A0A2D4C4C1_PYTIN (Polycomb-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4C1_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 3.530e-5
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 
Query: 2497 PLIVLPLRLPQPRHTTWVGMPSNHRADDDPVLRYVPYFGDNDHGALFPVVKMDGM 2661
            PL + PLR P  R TT+V  P++ R DDDP+LRYVPYFGD+D G    + + DG+
Sbjct:    3 PLALAPLR-PLSRLTTFVSAPTSVRVDDDPILRYVPYFGDDDRGDAIDLQRYDGV 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2R4S1_9STRA5.650e-956.92Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2D4C4C1_PYTIN3.530e-552.73Polycomb-like protein n=1 Tax=Pythium insidiosum T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10contigP-wetherbeei_contig10:11312..14370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog653948.CCA24598
PFAMsSET
Model size2770
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11430,ko:K17451
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05206,map00310,map05206
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000211
EggNOG OGsCOG2940@1|root,KOG1079@2759|Eukaryota
EC2.1.1.43
Descriptionhistone-lysine N-methyltransferase activity
Cds size2769
COG categoryG
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185848.3568547-CDS-P-wetherbeei_contig10:11311..139641683185848.3568547-CDS-P-wetherbeei_contig10:11311..13964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10 11312..13964 +
1683185848.3696647-CDS-P-wetherbeei_contig10:14253..143691683185848.3696647-CDS-P-wetherbeei_contig10:14253..14369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10 14254..14369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10.3.2prot_P-wetherbeei_contig10.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10 11312..14369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10.3.2

>prot_P-wetherbeei_contig10.3.2 ID=prot_P-wetherbeei_contig10.3.2|Name=mRNA_P-wetherbeei_contig10.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=923bp
PDPEPKRPRRTAAAIAGLRISDVSEVYHLKSYCGTKSRAIKQEAKREEPD
ATAASASHAAVAQAVSTVDSLYVGEDEADEGGGGDEGGGAGRASPEREIL
SINSSSDEGAFLNIEDDDDAEAPPPPPPTSPRPLALQEAAPRAAARHGTG
ASRKRPRPKTSAPRAPRPSSSPATPAQAAGDKGDAVASGATGAAPVPAVV
ARQPRTAAAVAACRISDVTSAMRSMRYCGLESFGALAPAEMVAAPAPAEK
AASPIAAAAAASAMDDDSKNGDTLGPLPAPPRRSRPAAGGVGAAAAAAAA
AAAAAASKRRRLHREPSLGVQEIFAPPPLSDLEWRPPTPLPVPPNILRLP
SGNAASPLTKTLPLSQYALDGVENADTASAEEDDDDEIELSAADAFASAT
GAAAASTAGAMLVPPVREDGDEDPPAAAAAPAAAPRRLDVRMTARLIEAA
HRARRRLATLHARRCDAVMEASRADIRRMQGVLAAHRASRRTAAALQGSG
AAAAAAGAAAAGRAALAVPYVMLEHPGDPKRRLEAFDTDPLPRGHEASKL
MPRDNRSHGPRFARNKCCAATADAASSCGGGDDTSGPDLGDPLGGDGAAA
SGANKVIAVSDDATITEGSTTSGESELNGGGGGDVDAGDSGDSGNLGGDG
DGTGGNGDNPASIDSSCGPAILNGVNPKASRLVSDDDGAAALNEGSGFPA
ADGGGSSGGRSGGESSGGGGDVGDSGGGGSWGGGGAFSGGGGGGGSSQLQ
FPNVWADAMANDDEDGYGAEDEGEPAADFLAAAGAVGLAAAAADRPYSAP
SDFASASTTAANGPVRLPRSSRVLGTVETRRVPLIVLPLRLPQPRHTTWV
GMPSNHRADDDPVLRYVPYFGDNDHGALFPVVKMDGMDVSAYDMVPDERE
AEIISEVDEETVRAVAAASFGRN
back to top

mRNA from alignment at P-wetherbeei_contig10:11312..14370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10.3.2 ID=mRNA_P-wetherbeei_contig10.3.2|Name=mRNA_P-wetherbeei_contig10.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3059bp|location=Sequence derived from alignment at P-wetherbeei_contig10:11312..14370+ (Phaeothamnion wetherbeei SAG_119_79)
CCAGATCCCGAGCCGAAGCGGCCGCGGCGAACGGCTGCCGCTATCGCTGG
CTTGCGCATCTCGGACGTAAGCGAGGTGTATCACCTCAAGAGTTACTGTG
GGACCAAGTCACGAGCGATCAAGCAAGAGGCCAAAAGGGAGGAGCCCGAT
GCCACTGCTGCCAGCGCGTCTCATGCTGCCGTTGCTCAGGCCGTCTCCAC
GGTCGATTCACTGTATGTTGGGGAGGACGAAGCAGATGAGGGTGGGGGAG
GCGATGAAGGAGGCGGCGCAGGCCGCGCCTCCCCCGAGCGCGAAATTCTG
TCGATCAACTCCTCGTCGGACGAGGGAGCCTTCCTGAACATCGAGGATGA
CGACGATGCGGAAGCGCCACCACCGCCGCCTCCAACATCACCGCGCCCGC
TCGCATTGCAGGAGGCGGCGCCTCGTGCCGCAGCCCGCCACGGTACGGGA
GCTTCTCGAAAGCGTCCACGGCCCAAGACCTCTGCGCCGAGGGCCCCTCG
GCCCTCAAGCTCCCCAGCAACGCCGGCTCAGGCCGCCGGCGACAAGGGCG
ATGCCGTGGCCTCGGGCGCCACGGGAGCTGCTCCTGTTCCCGCGGTCGTG
GCTCGTCAGCCGCGCACAGCGGCCGCTGTCGCCGCGTGTCGCATCTCGGA
CGTGACGTCCGCGATGCGCTCCATGCGGTACTGCGGCCTCGAGAGCTTTG
GGGCGCTCGCGCCGGCCGAGATGGTTGCGGCCCCGGCCCCGGCTGAGAAA
GCAGCCTCGCCCATCGCAGCGGCGGCGGCGGCTTCGGCAATGGACGACGA
TTCGAAGAACGGAGACACGTTAGGCCCGCTGCCGGCGCCGCCGAGGCGTT
CGCGGCCGGCTGCAGGAGGGGTGGGAGCAGCGGCGGCGGCTGCTGCAGCG
GCGGCTGCTGCAGCGGCGTCCAAGCGCAGGCGCCTACATCGGGAGCCCTC
TCTCGGCGTGCAGGAGATTTTTGCTCCCCCGCCGCTGAGTGACCTGGAAT
GGCGGCCCCCGACGCCGCTTCCGGTGCCACCCAACATCCTCCGCCTCCCG
TCAGGCAATGCAGCGTCACCCCTAACCAAGACGCTTCCACTGTCACAATA
CGCGCTGGACGGCGTCGAAAATGCTGACACGGCGTCAGCTGAGGAGGATG
ACGATGACGAAATTGAGCTCTCGGCTGCCGATGCATTCGCATCGGCCACT
GGCGCCGCTGCTGCATCGACGGCGGGTGCAATGCTGGTACCGCCTGTAAG
AGAAGACGGGGATGAGGATCCGCCGGCGGCGGCGGCGGCGCCAGCGGCAG
CGCCGAGGCGTCTGGATGTCCGCATGACAGCGCGGCTGATTGAGGCGGCT
CATCGGGCACGACGGCGGCTGGCGACGTTGCACGCCCGCCGCTGCGACGC
CGTCATGGAGGCGAGCCGCGCTGACATCCGCCGCATGCAGGGAGTGCTGG
CGGCACACCGCGCATCCCGCCGCACTGCCGCGGCGTTGCAGGGATCAGGA
GCGGCGGCTGCGGCGGCGGGAGCAGCGGCGGCGGGTCGAGCGGCATTGGC
GGTACCATACGTGATGCTGGAGCATCCTGGCGACCCGAAGAGGCGGCTCG
AAGCGTTTGACACAGACCCATTGCCGCGCGGCCACGAGGCATCGAAGCTG
ATGCCGCGCGACAACCGCAGCCACGGCCCCCGATTTGCGCGCAACAAATG
CTGTGCCGCCACGGCCGATGCGGCCAGTTCTTGCGGCGGCGGCGACGATA
CATCCGGTCCAGATCTTGGCGATCCATTGGGCGGCGATGGGGCTGCGGCT
TCCGGGGCCAACAAAGTCATTGCAGTTTCGGACGATGCGACAATCACGGA
AGGCAGCACCACATCAGGGGAAAGCGAGTTGAACGGCGGCGGTGGCGGCG
ACGTCGACGCTGGCGACAGCGGCGACAGCGGCAATTTAGGCGGCGATGGC
GATGGCACAGGGGGCAATGGTGACAACCCTGCCAGTATTGACAGCAGCTG
CGGCCCTGCCATTCTCAATGGCGTCAATCCGAAGGCCAGCAGATTGGTAA
GCGATGACGATGGGGCTGCGGCTTTGAATGAAGGTAGCGGTTTTCCAGCA
GCCGATGGCGGCGGCAGCAGCGGCGGGAGAAGCGGCGGCGAAAGCAGCGG
CGGCGGCGGTGATGTCGGCGACAGTGGCGGCGGCGGCAGCTGGGGCGGTG
GCGGTGCTTTCAGTGGCGGCGGCGGCGGCGGCGGCAGCAGCCAGCTGCAA
TTTCCCAACGTATGGGCCGACGCGATGGCCAACGACGACGAGGACGGCTA
TGGCGCCGAGGACGAGGGAGAACCCGCCGCGGACTTTCTTGCTGCAGCCG
GCGCCGTTGGGCTCGCAGCGGCGGCGGCAGACAGGCCTTACAGCGCGCCG
TCCGACTTCGCCTCCGCGTCGACAACGGCGGCTAATGGTCCCGTGCGGCT
CCCTCGCTCCAGCCGCGTGCTTGGGACCGTGGAGACTCGCCGCGTGCCTC
TGATCGTGCTGCCGCTGCGGCTTCCACAGCCGCGCCATACGACGTGGGTG
GGCATGCCGAGCAACCATCGTGCGGACGACGATCCGGTGCTGCGCTACGT
GCCCTACTTCGGCGACAACGACCACGGTGCCCTTTTCCCCGTTGTGAAGA
TGGGTCGACATTTTTTCTCTTCATTTGTTGCTCCTTGTTGCATATAGCGG
GGGCTTCTTTTGCTTTTTGGGGTTCGATTGGCTCGCCTGTGTCCTGCTGC
CGTACGAAACAAATCTATTGTTTCCAAGAAGATACTCTGGGTTTTGCATC
GGATGTCACCGTGCTCTGTCATGTCTTGCGCCGGACATTTTGCTGTCCTC
CGTCGCTGTGGCTTGCTTCTACTTAACCAGGTATAACCCGCAACCTGACC
GTTCTTTCTCTCGTGCCCTCGCGCAATTTCTACCTGTTGCAGATGGCATG
GATGTGAGCGCTTACGACATGGTTCCGGATGAGAGAGAGGCTGAGATAAT
CTCAGAAGTCGACGAGGAAACCGTCCGTGCTGTCGCTGCGGCATCCTTTG
GCAGGAACA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10:11312..14370+

>mRNA_P-wetherbeei_contig10.3.2 ID=mRNA_P-wetherbeei_contig10.3.2|Name=mRNA_P-wetherbeei_contig10.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2769bp|location=Sequence derived from alignment at P-wetherbeei_contig10:11312..14370+ (Phaeothamnion wetherbeei SAG_119_79)
CCAGATCCCGAGCCGAAGCGGCCGCGGCGAACGGCTGCCGCTATCGCTGG
CTTGCGCATCTCGGACGTAAGCGAGGTGTATCACCTCAAGAGTTACTGTG
GGACCAAGTCACGAGCGATCAAGCAAGAGGCCAAAAGGGAGGAGCCCGAT
GCCACTGCTGCCAGCGCGTCTCATGCTGCCGTTGCTCAGGCCGTCTCCAC
GGTCGATTCACTGTATGTTGGGGAGGACGAAGCAGATGAGGGTGGGGGAG
GCGATGAAGGAGGCGGCGCAGGCCGCGCCTCCCCCGAGCGCGAAATTCTG
TCGATCAACTCCTCGTCGGACGAGGGAGCCTTCCTGAACATCGAGGATGA
CGACGATGCGGAAGCGCCACCACCGCCGCCTCCAACATCACCGCGCCCGC
TCGCATTGCAGGAGGCGGCGCCTCGTGCCGCAGCCCGCCACGGTACGGGA
GCTTCTCGAAAGCGTCCACGGCCCAAGACCTCTGCGCCGAGGGCCCCTCG
GCCCTCAAGCTCCCCAGCAACGCCGGCTCAGGCCGCCGGCGACAAGGGCG
ATGCCGTGGCCTCGGGCGCCACGGGAGCTGCTCCTGTTCCCGCGGTCGTG
GCTCGTCAGCCGCGCACAGCGGCCGCTGTCGCCGCGTGTCGCATCTCGGA
CGTGACGTCCGCGATGCGCTCCATGCGGTACTGCGGCCTCGAGAGCTTTG
GGGCGCTCGCGCCGGCCGAGATGGTTGCGGCCCCGGCCCCGGCTGAGAAA
GCAGCCTCGCCCATCGCAGCGGCGGCGGCGGCTTCGGCAATGGACGACGA
TTCGAAGAACGGAGACACGTTAGGCCCGCTGCCGGCGCCGCCGAGGCGTT
CGCGGCCGGCTGCAGGAGGGGTGGGAGCAGCGGCGGCGGCTGCTGCAGCG
GCGGCTGCTGCAGCGGCGTCCAAGCGCAGGCGCCTACATCGGGAGCCCTC
TCTCGGCGTGCAGGAGATTTTTGCTCCCCCGCCGCTGAGTGACCTGGAAT
GGCGGCCCCCGACGCCGCTTCCGGTGCCACCCAACATCCTCCGCCTCCCG
TCAGGCAATGCAGCGTCACCCCTAACCAAGACGCTTCCACTGTCACAATA
CGCGCTGGACGGCGTCGAAAATGCTGACACGGCGTCAGCTGAGGAGGATG
ACGATGACGAAATTGAGCTCTCGGCTGCCGATGCATTCGCATCGGCCACT
GGCGCCGCTGCTGCATCGACGGCGGGTGCAATGCTGGTACCGCCTGTAAG
AGAAGACGGGGATGAGGATCCGCCGGCGGCGGCGGCGGCGCCAGCGGCAG
CGCCGAGGCGTCTGGATGTCCGCATGACAGCGCGGCTGATTGAGGCGGCT
CATCGGGCACGACGGCGGCTGGCGACGTTGCACGCCCGCCGCTGCGACGC
CGTCATGGAGGCGAGCCGCGCTGACATCCGCCGCATGCAGGGAGTGCTGG
CGGCACACCGCGCATCCCGCCGCACTGCCGCGGCGTTGCAGGGATCAGGA
GCGGCGGCTGCGGCGGCGGGAGCAGCGGCGGCGGGTCGAGCGGCATTGGC
GGTACCATACGTGATGCTGGAGCATCCTGGCGACCCGAAGAGGCGGCTCG
AAGCGTTTGACACAGACCCATTGCCGCGCGGCCACGAGGCATCGAAGCTG
ATGCCGCGCGACAACCGCAGCCACGGCCCCCGATTTGCGCGCAACAAATG
CTGTGCCGCCACGGCCGATGCGGCCAGTTCTTGCGGCGGCGGCGACGATA
CATCCGGTCCAGATCTTGGCGATCCATTGGGCGGCGATGGGGCTGCGGCT
TCCGGGGCCAACAAAGTCATTGCAGTTTCGGACGATGCGACAATCACGGA
AGGCAGCACCACATCAGGGGAAAGCGAGTTGAACGGCGGCGGTGGCGGCG
ACGTCGACGCTGGCGACAGCGGCGACAGCGGCAATTTAGGCGGCGATGGC
GATGGCACAGGGGGCAATGGTGACAACCCTGCCAGTATTGACAGCAGCTG
CGGCCCTGCCATTCTCAATGGCGTCAATCCGAAGGCCAGCAGATTGGTAA
GCGATGACGATGGGGCTGCGGCTTTGAATGAAGGTAGCGGTTTTCCAGCA
GCCGATGGCGGCGGCAGCAGCGGCGGGAGAAGCGGCGGCGAAAGCAGCGG
CGGCGGCGGTGATGTCGGCGACAGTGGCGGCGGCGGCAGCTGGGGCGGTG
GCGGTGCTTTCAGTGGCGGCGGCGGCGGCGGCGGCAGCAGCCAGCTGCAA
TTTCCCAACGTATGGGCCGACGCGATGGCCAACGACGACGAGGACGGCTA
TGGCGCCGAGGACGAGGGAGAACCCGCCGCGGACTTTCTTGCTGCAGCCG
GCGCCGTTGGGCTCGCAGCGGCGGCGGCAGACAGGCCTTACAGCGCGCCG
TCCGACTTCGCCTCCGCGTCGACAACGGCGGCTAATGGTCCCGTGCGGCT
CCCTCGCTCCAGCCGCGTGCTTGGGACCGTGGAGACTCGCCGCGTGCCTC
TGATCGTGCTGCCGCTGCGGCTTCCACAGCCGCGCCATACGACGTGGGTG
GGCATGCCGAGCAACCATCGTGCGGACGACGATCCGGTGCTGCGCTACGT
GCCCTACTTCGGCGACAACGACCACGGTGCCCTTTTCCCCGTTGTGAAGA
TGGATGGCATGGATGTGAGCGCTTACGACATGGTTCCGGATGAGAGAGAG
GCTGAGATAATCTCAGAAGTCGACGAGGAAACCGTCCGTGCTGTCGCTGC
GGCATCCTTTGGCAGGAAC
back to top