mRNA_P-wetherbeei_contig1139.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1139.3.2
Unique NamemRNA_P-wetherbeei_contig1139.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1139.3.2 vs. uniprot
Match: A0A2D4CAR1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAR1_PYTIN)

HSP 1 Score: 69.3 bits (168), Expect = 8.360e-9
Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 3 
Query: 1095 YAAARREMAAFLAAEREMFVPLVAAWRKDRPILVVADRYALAAFDACEALDLPYVINNAGPLLDIDGTAASAAXXXXXXXXXXXXXXXXXTLVPAPLSGPASHAGRSLWDRLRGRHLRLLRALAAREAACAVDAFRMSQGLPPVLAK 1535
            YAA  R  A+F   +R MF  L+  +  DRP LVV DRY  A FDAC AL LPYV+N+   L+DID   A                      +PAP S    H    L   L G H RL   L+  +    ++  R   GLP +  K
Sbjct:  113 YAATLRYYASF---QRPMFSALMDDFEDDRPDLVVIDRYTFAGFDACHALQLPYVVNSPSMLMDIDSPPAH---------------------IPAPFSNYTMHTASVLERCLNGLH-RLRFRLSMVQVFKDINTVRREHGLPAIQTK 234
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BLAST of mRNA_P-wetherbeei_contig1139.3.2 vs. uniprot
Match: A0A485KYT5_9STRA (Aste57867_13696 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYT5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.070e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 3 
Query: 1089 GPYAAARREMAAFLAAEREMFVPLVAAWRKDRPILVVADRYALAAFDACEALDLPYVINNAGPLLDID 1292
            G Y +    +  + + +  MF PLV  + +D P +VV DRY  A  DAC+A+ +PYV+NN   LLDID
Sbjct: 1461 GVYTSYWGALQHYASFQTPMFHPLVEDYTEDPPSIVVVDRYTFAGMDACDAVGIPYVVNNPFLLLDID 1528
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1139.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D4CAR1_PYTIN8.360e-936.05Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A485KYT5_9STRA4.070e-542.65Aste57867_13696 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1139contigP-wetherbeei_contig1139:1339..3512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T005005
PFAMsUDPGT
Model size1579
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue4.14e-09
EggNOG OGsKOG1192@1|root,KOG1192@2759|Eukaryota,1MCXE@121069|Pythiales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_000540.1
DescriptionUDP-glucosyl transferase family protein. Source PGD
Cds size1173
COG categoryCG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.3306367-CDS-P-wetherbeei_contig1139:1338..17081683185909.3306367-CDS-P-wetherbeei_contig1139:1338..1708Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1139 1339..1708 -
1683185909.3449836-CDS-P-wetherbeei_contig1139:2305..31081683185909.3449836-CDS-P-wetherbeei_contig1139:2305..3108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1139 2306..3108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.352147-UTR-P-wetherbeei_contig1139:3108..35121683185909.352147-UTR-P-wetherbeei_contig1139:3108..3512Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1139 3109..3512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1139.3.2prot_P-wetherbeei_contig1139.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1139 1339..3108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1139.3.2

>prot_P-wetherbeei_contig1139.3.2 ID=prot_P-wetherbeei_contig1139.3.2|Name=mRNA_P-wetherbeei_contig1139.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=391bp
MSSSTTTISTFRRIALAPFFVTRCLSATLLVVLAAPSSLLQTRRSPSTTP
STPPKPIVKTVTVTLRRPFETHSQTRASRTPSRLESSSLAPSICFVGLPF
ESHVEPLLYLAAELAARGYRASLAVPEGPFSRWATAWAAARNLPGLSILP
LVPPPPAAPPKPDPAAAAAAAAAASPGQNSEATTSAASASNAAGVEGNGG
VYGGNGGGWRDWWGLGWLAGMVPELLGWGPYAAARREMAAFLAAEREMFV
PLVAAWRKDRPILVVADRYALAAFDACEALDLPYVINNAGPLLDIDGTAA
SAATAAAAAAAGPLAAAAPPTLVPAPLSGPASHAGRSLWDRLRGRHLRLL
RALAAREAACAVDAFRMSQGLPPVLAKPVAAAATAAAAGTA
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mRNA from alignment at P-wetherbeei_contig1139:1339..3512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1139.3.2 ID=mRNA_P-wetherbeei_contig1139.3.2|Name=mRNA_P-wetherbeei_contig1139.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2174bp|location=Sequence derived from alignment at P-wetherbeei_contig1139:1339..3512- (Phaeothamnion wetherbeei SAG_119_79)
GTCTGTGGCCGGGTGGACGCCGCACAATCGTTTACAAAGGACGGCGACGT
CGTCGACAAGGCGTTGTCTGATAGGTGAGAATTTCTCGCTTCGCCCTAAG
CAGAGCTCTTCCTCATGCCTCGTCGCCAAAGGGGCGCAAAGACTTACATT
TCCAGCGCGTTCTTGTTCGCGGTTTCGTTTCGCGAGAGCGGTAGTCTGTT
GGCAGGGGTTTCTGAGGCCTGGATGGCTGTTTTAGCGGGTTGGGTACTTG
CAGCGTCTTCAGGAGGGGAAGGGCCCTCGCCTGCGTTTCATACAACGCGT
CCCTCCGTTTGTACGGCGATGTGCATCATTTTTCCCCTTCTCTCTGCCGT
CTCCTTTTTCCTTCTGAGTCCCTTTCACTAGCTCAAAAGCTACGTAAACG
ATCCATGTCTTCCTCGACAACCACAATCTCCACGTTCAGAAGAATTGCTC
TCGCGCCTTTCTTTGTGACGCGCTGCCTCTCCGCAACCCTTCTCGTCGTC
CTGGCCGCCCCTTCGTCTCTCCTCCAAACACGTCGTTCTCCATCCACTAC
CCCCTCCACGCCACCAAAACCCATCGTAAAAACCGTCACGGTTACTCTAC
GGCGGCCTTTCGAAACCCACTCCCAAACGCGCGCATCCCGGACCCCTTCT
CGTCTGGAAAGCAGCTCCCTGGCGCCGTCCATCTGCTTTGTAGGACTCCC
GTTCGAGAGCCACGTCGAGCCGCTGCTGTACCTCGCAGCGGAGCTGGCAG
CCCGTGGCTACCGCGCGTCGCTCGCCGTGCCCGAGGGCCCCTTCTCCCGC
TGGGCGACGGCGTGGGCGGCGGCGCGGAACCTCCCGGGCCTCTCCATCCT
GCCGCTCGTGCCGCCGCCACCGGCTGCCCCGCCAAAGCCGGATCCGGCCG
CCGCCGCCGCCGCCGCCGCAGCGGCGTCGCCGGGGCAAAACTCTGAAGCG
ACGACGTCTGCGGCGTCAGCGTCGAACGCGGCAGGAGTCGAGGGGAACGG
TGGTGTCTATGGCGGCAACGGCGGCGGCTGGCGGGACTGGTGGGGGCTGG
GGTGGCTAGCAGGCATGGTGCCGGAGCTGCTGGGATGGGGGCCGTACGCG
GCGGCGCGGCGTGAGATGGCGGCGTTCTTGGCGGCCGAGCGCGAGATGTT
TGTGCCGCTGGTCGCGGCATGGCGGAAGGACCGGCCGATTCTTGTTGTCG
CTGACAGGTACGCTTGGGGCACAGGGAGTAATGGAGGAAGCCAGGGCGCT
TTCTTTGCGCGATATTGCGGCTGCGGTACTCCTGTCCGTCGTTTCGAGTT
GTTTGGCGATTGTGGGTGTTGTGTGCTAGCGCGAGTTTGAAGGGCTCTCC
TGAAGTGCTTTTTTCTTGTACAATCTTCGGCGGCTTTCCGTGCTTTTGCC
CTGTTTCGCGCTCTCATGTCGTAAGGTTGTGCATCGTTTGAGGCCAGATT
TCTGTGCTCTCCAGCCTCATGCGTTCCCCAGCCTTATGAATTCTGATTGC
ATTGACAGAACCCTGCATTCGACGATTCACTTTTGAGTTCGGAGGGATGG
TGTCGTCACGAGTAGAAAAGTTGAAAACCGCGTTATCAGGCTCTGTGACT
AGACTTACTTCCCTCCCTTCCCCCGGCTCGCTCTTGTCGCCGCCTGCAAT
CCCTAAACCCCGCCCCTTTCTTCCCTTCCCCTTCTTCCCCAATCTCTTGA
TCTTTCCTGATCCCTCGTTTTTATCGCGGCGTCGAAAACAACCTCACGGG
GCTGTCTGCATGTCTGTTGTTTCTGTTCCACTGCCACCCTGCCGGCCTTT
GCAGGTACGCTCTGGCAGCATTCGACGCCTGTGAGGCGCTCGACCTGCCG
TACGTCATCAACAACGCCGGCCCGCTCCTAGACATCGACGGCACCGCCGC
TTCCGCTGCCACCGCCGCGGCTGCTGCCGCCGCCGGGCCCCTGGCGGCCG
CCGCACCGCCGACACTGGTGCCGGCGCCGTTATCGGGCCCGGCATCGCAT
GCCGGCCGCTCTCTCTGGGACCGCCTCCGCGGTCGCCACCTGCGGCTGCT
GCGGGCGCTGGCTGCGCGCGAAGCGGCGTGCGCCGTGGACGCGTTTCGAA
TGAGCCAGGGACTCCCGCCAGTACTGGCAAAACCAGTGGCGGCGGCGGCG
ACAGCGGCAGCTGCTGGAACGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1139:1339..3512-

>mRNA_P-wetherbeei_contig1139.3.2 ID=mRNA_P-wetherbeei_contig1139.3.2|Name=mRNA_P-wetherbeei_contig1139.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1173bp|location=Sequence derived from alignment at P-wetherbeei_contig1139:1339..3512- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTTCCTCGACAACCACAATCTCCACGTTCAGAAGAATTGCTCTCGC
GCCTTTCTTTGTGACGCGCTGCCTCTCCGCAACCCTTCTCGTCGTCCTGG
CCGCCCCTTCGTCTCTCCTCCAAACACGTCGTTCTCCATCCACTACCCCC
TCCACGCCACCAAAACCCATCGTAAAAACCGTCACGGTTACTCTACGGCG
GCCTTTCGAAACCCACTCCCAAACGCGCGCATCCCGGACCCCTTCTCGTC
TGGAAAGCAGCTCCCTGGCGCCGTCCATCTGCTTTGTAGGACTCCCGTTC
GAGAGCCACGTCGAGCCGCTGCTGTACCTCGCAGCGGAGCTGGCAGCCCG
TGGCTACCGCGCGTCGCTCGCCGTGCCCGAGGGCCCCTTCTCCCGCTGGG
CGACGGCGTGGGCGGCGGCGCGGAACCTCCCGGGCCTCTCCATCCTGCCG
CTCGTGCCGCCGCCACCGGCTGCCCCGCCAAAGCCGGATCCGGCCGCCGC
CGCCGCCGCCGCCGCAGCGGCGTCGCCGGGGCAAAACTCTGAAGCGACGA
CGTCTGCGGCGTCAGCGTCGAACGCGGCAGGAGTCGAGGGGAACGGTGGT
GTCTATGGCGGCAACGGCGGCGGCTGGCGGGACTGGTGGGGGCTGGGGTG
GCTAGCAGGCATGGTGCCGGAGCTGCTGGGATGGGGGCCGTACGCGGCGG
CGCGGCGTGAGATGGCGGCGTTCTTGGCGGCCGAGCGCGAGATGTTTGTG
CCGCTGGTCGCGGCATGGCGGAAGGACCGGCCGATTCTTGTTGTCGCTGA
CAGGTACGCTCTGGCAGCATTCGACGCCTGTGAGGCGCTCGACCTGCCGT
ACGTCATCAACAACGCCGGCCCGCTCCTAGACATCGACGGCACCGCCGCT
TCCGCTGCCACCGCCGCGGCTGCTGCCGCCGCCGGGCCCCTGGCGGCCGC
CGCACCGCCGACACTGGTGCCGGCGCCGTTATCGGGCCCGGCATCGCATG
CCGGCCGCTCTCTCTGGGACCGCCTCCGCGGTCGCCACCTGCGGCTGCTG
CGGGCGCTGGCTGCGCGCGAAGCGGCGTGCGCCGTGGACGCGTTTCGAAT
GAGCCAGGGACTCCCGCCAGTACTGGCAAAACCAGTGGCGGCGGCGGCGA
CAGCGGCAGCTGCTGGAACGGCG
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