mRNA_P-wetherbeei_contig11271.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11271.1.1
Unique NamemRNA_P-wetherbeei_contig11271.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A2R5F3V4_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Novimethylophilus kurashikiensis TaxID=1825523 RepID=A0A2R5F3V4_9PROT)

HSP 1 Score: 347 bits (891), Expect = 2.130e-117
Identity = 168/281 (59.79%), Postives = 218/281 (77.58%), Query Frame = 1
Query:   22 QPGTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPAAAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            Q G +VA+ G+++ VEL D  +++CVTRGK++++ACGD+V I  T P +GV+E+  PR SL YRS+  R+KL+AANVTQIVIVLA+ P F+ EL+DRCL AAE  GI  L+ LNK DLP +A+A+  L  Y+ LGY+VLPL+AK DIAPL   L G TSVLVGQSGMGKSTI+N LLPDA AR GE+S AL  G+HTTT ARLYHLDAAS +IDSPGLQEFGL H+ P+ + +AF+EFRP+LG+C+F+DC+H +EPGCA+  A+E G +   R+  Y +L+
Sbjct:    3 QHGLIVAAHGKRYDVELHDGVIVSCVTRGKKSELACGDKVEIKPTGPGEGVVENFLPRSSLLYRSNEFRKKLLAANVTQIVIVLAAKPSFYPELVDRCLVAAESEGIRPLIVLNKADLPESAEAMARLSLYQRLGYEVLPLSAKQDIAPLLPHLHGQTSVLVGQSGMGKSTIVNALLPDAQARTGEISSALDSGKHTTTAARLYHLDAASQLIDSPGLQEFGLAHITPDQIEYAFLEFRPYLGKCRFSDCRHRSEPGCAVHEAIEAGAVTTGRLSCYHQLI 283          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A1F4DW51_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DW51_9PROT)

HSP 1 Score: 346 bits (888), Expect = 1.020e-116
Identity = 171/278 (61.51%), Postives = 216/278 (77.70%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPAAAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKL 861
            G+++AS+GR++ VE  D+T++ CVTRGKR  +ACGDRV++A + P QGVIE+ APR +L YRSD  R+KLIAANVTQ +IV+A++P FH +L++RCL AAE  G+ AL+ LNK DLP +A AL+SLE YR LGY VL L+A+ D+ PL   L G  +VLVG SGMGKSTIINRLLP AAAR  ++S AL  GRHTTTHARLYHLDAASHIIDSPG+QEFGL  +  ++ AHAF+EFRP LG+C+F DC+HL+EP CAI +A     I  +R+ SYR L
Sbjct:   15 GSIIASYGRRYLVEFPDATVLDCVTRGKRGALACGDRVSVAPSGPGQGVIEAAAPRTTLLYRSDAFRQKLIAANVTQSIIVVAAAPSFHEDLVNRCLVAAEHGGMAALIVLNKTDLPESAAALESLELYRRLGYRVLALSARRDVRPLVPLLRGQVTVLVGPSGMGKSTIINRLLPHAAARTDDVSRALNSGRHTTTHARLYHLDAASHIIDSPGMQEFGLHQLTIDEAAHAFVEFRPWLGRCRFRDCRHLSEPDCAIASACAENRISERRLASYRSL 292          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A658BTC0_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A658BTC0_9PROT)

HSP 1 Score: 345 bits (885), Expect = 2.140e-116
Identity = 179/280 (63.93%), Postives = 213/280 (76.07%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPA-AAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            G + AS+GRQFTVELAD  LIACVTRGK+   ACGD+V I  T PDQGVIE+  PR SL YRSD  REK+IAANVTQI+IVLA+ P F+ +L++RCLAAAE   I AL+ LNK DL +  AQAL+ L  YR LGY +L L+A  D +PL   L G TSVLVGQSGMGKS+IIN LLP A A   E+S  L  G+HTTTHARLYHLD  SHIIDSPGLQEFGL H+ PE++ HAFIEFRP LG+CKFN+C+HL+EPGCA+ AA   G I  +R+ +Y+KL+
Sbjct:   11 GQITASYGRQFTVELADGRLIACVTRGKKGGAACGDKVRIKPTGPDQGVIEAILPRQSLLYRSDAFREKIIAANVTQIIIVLAAVPSFYEDLVNRCLAAAESTKIKALIVLNKADLQSETAQALEKLALYRDLGYPILTLSAHQDTSPLIPFLQGETSVLVGQSGMGKSSIINSLLPGAEADTREISTTLDSGKHTTTHARLYHLDPDSHIIDSPGLQEFGLHHLKPEEIDHAFIEFRPFLGKCKFNNCRHLSEPGCAVLAAAMAGHIQPRRLAAYQKLM 290          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A6F8VD01_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Sulfurimicrobium lacus TaxID=2715678 RepID=A0A6F8VD01_9PROT)

HSP 1 Score: 341 bits (875), Expect = 5.960e-115
Identity = 174/280 (62.14%), Postives = 214/280 (76.43%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPA-AAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            G ++A++GRQFTVEL D   + CVTRGK++  ACGDRV IA+T+PDQGVIE+  PR SL YRSD  REK+IAANVTQI+IVLA+ P F+ +L++RCL AAE A I AL+ LNK DL A  A+A+++L+ YR LGY +L L A  DIAPLR  L G TSVLVGQSGMGKS+IIN L P       E+S  L  G+HTTT A++YHLD  SHIIDSPGLQEFGL H+ PE++ HAFIEFRP+LGQCKFN+C H +EPGCA+ AAVE G I  +R+ ++ KLV
Sbjct:    7 GQIIAAYGRQFTVELPDGKHVTCVTRGKKSGAACGDRVRIALTSPDQGVIEAIQPRQSLLYRSDAFREKIIAANVTQIIIVLAAVPSFYEDLVNRCLVAAEAAKIKALIVLNKADLVAETARAMETLQPYRNLGYPLLTLCAHSDIAPLRPFLEGETSVLVGQSGMGKSSIINALFPGINLETREISKTLDSGKHTTTFAKIYHLDPDSHIIDSPGLQEFGLHHLKPEEIDHAFIEFRPYLGQCKFNNCHHRSEPGCAVLAAVEAGSIHRRRLAAFHKLV 286          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A0S8C6P1_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C6P1_9PROT)

HSP 1 Score: 341 bits (874), Expect = 1.190e-114
Identity = 172/288 (59.72%), Postives = 216/288 (75.00%), Query Frame = 1
Query:    1 KKTAAPTQPGTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPAAAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            KK +     G +VASFGR++ VEL D T + CVTRG+R  +ACGDRV +A + P QGVIE    R +L YRSD  R+KLIAANVTQIV+V+A  P FH +L++RCLAAAE  G+ +L+ LNKMDLP A +AL+SL  Y  LGY ++ L+AK D++ L A L G TS LVGQSGMGKSTI+N L P+AA R+ E+S AL  GRHTTTHARLYHL   +HIIDSPGLQEFGL H+   +LA AF+EFRP LG+C+F DC H++EPGCA+TAA   G+I  +R+ESYR+L+
Sbjct:    6 KKASLALLDGQIVASFGRRYLVELQDGTTLDCVTRGRRGALACGDRVGVARSGPGQGVIEKLGARDTLLYRSDRVRQKLIAANVTQIVVVVAPVPTFHEDLINRCLAAAEHGGMSSLIVLNKMDLPQAKRALKSLALYEQLGYRIVALSAKRDVSQLLAFLRGETSALVGQSGMGKSTIVNALAPEAAVRIAEISAALDSGRHTTTHARLYHLGHDTHIIDSPGLQEFGLHHLDMGELADAFVEFRPWLGRCRFRDCHHMSEPGCALTAACVAGKISERRLESYRQLL 293          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: UPI001BBECE3D (Ribosome small subunit-dependent GTPase A n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BBECE3D)

HSP 1 Score: 337 bits (864), Expect = 2.430e-113
Identity = 170/279 (60.93%), Postives = 212/279 (75.99%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLP-AAAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKL 861
            G VVA+FGRQF VELAD T + C+TRGK+  +ACGDRV +   +  QG+I++ APR SL YRSD  REK+IAANVTQI++VLA+ P F+ +LL+RCL AAE A I AL+ LNK DL   + QALQ L  Y  LGY +LPL+A  DIAPLR  L G TSVLVGQSGMGKS+I+N LLPD  AR  E+S AL  G+HTTTHA+LYHLDA SHIIDSPGLQEFGL H++ + + HAF+EFRP++G C+F +CKHL EP CA+  AV  G+I  +R+ +Y++L
Sbjct:    4 GQVVAAFGRQFLVELADGTTLPCITRGKKGGVACGDRVIVQSISASQGIIDTIAPRTSLLYRSDAFREKIIAANVTQIIVVLAAEPAFYEDLLNRCLIAAETADIKALIVLNKCDLENPSQQALQQLALYAELGYPLLPLSALQDIAPLRPWLHGQTSVLVGQSGMGKSSIVNALLPDIQARTREISQALNSGKHTTTHAQLYHLDADSHIIDSPGLQEFGLHHMSRDAITHAFVEFRPYIGDCRFANCKHLVEPDCAVRNAVATGKISERRLAAYQRL 282          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A1A9NPW7_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Methylobacillus sp. MM3 TaxID=1848039 RepID=A0A1A9NPW7_9PROT)

HSP 1 Score: 333 bits (853), Expect = 1.720e-111
Identity = 166/277 (59.93%), Postives = 217/277 (78.34%), Query Frame = 1
Query:   34 VVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPAAAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            VVASFG+++ VEL + T I+CVTRGK++D+ACGDRV I MT+ ++GV+E   PR SL YRS+  R+KL+AANVTQI+IV+A+ P F+ +L++RCL AAE AGI AL+ LNK DLP  + AL+ LE Y++LGY V  L+AK D + LR+ L G TSVLVGQSGMGKST++N LLP+A +R  E+S  L  G+HTTT ARLYHLD+AS +IDSPGLQEFGL H+  +++ HAFIEFRP+LG+C+FN+C+H  EP CAI  AV  G+I   R+ESY+KL+
Sbjct:   16 VVASFGKRYDVELENGTQISCVTRGKKSDLACGDRVEIHMTSVNEGVVEDILPRSSLLYRSNEYRKKLLAANVTQIIIVIAAEPSFYEDLVNRCLIAAEAAGIRALILLNKSDLPETSAALKRLELYQSLGYPVQALSAKQDASQLRSWLQGQTSVLVGQSGMGKSTLVNALLPEAKSRTQEISAVLDSGKHTTTSARLYHLDSASSLIDSPGLQEFGLNHLTSDEMEHAFIEFRPYLGKCRFNNCRHHKEPDCAILNAVRDGKISQIRLESYQKLL 292          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A4R3YAH1_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=2 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3YAH1_9PROT)

HSP 1 Score: 332 bits (852), Expect = 1.980e-111
Identity = 170/280 (60.71%), Postives = 210/280 (75.00%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPAAA-QALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            G VVA++GR++ VEL    LI+CV RGK+  +ACGDRV I  +  +QG IE  APR SL YRSD    K+IAANVTQI+IV A+ P F+ ELL+RCLAAAE   I AL+ LNK DL   + QAL +L+ YR LGY+VL L+AK DI+PL+  L GHTSVLVGQSGMGKS+IIN LLP+A     E+S AL  GRHTTTH RLYHLD  S IIDSPGLQEFGL H++P ++ HAFIEFRP+LG CKFN+C H++EPGCA+  A+E+ EI  +R+ +Y KL+
Sbjct:    4 GQVVANYGRRYEVELDSGKLISCVMRGKKGGVACGDRVFITPSGTEQGAIERIAPRASLLYRSDTFHTKIIAANVTQIIIVAAAVPSFYEELLNRCLAAAEANNIKALIVLNKCDLSEESKQALNNLQLYRDLGYEVLQLSAKQDISPLKPYLKGHTSVLVGQSGMGKSSIINALLPEARVVTAEISEALDSGRHTTTHTRLYHLDEQSQIIDSPGLQEFGLHHLSPTEIDHAFIEFRPYLGHCKFNNCLHISEPGCALLEALEKCEISKRRISAYHKLI 283          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: UPI0019AA1BA0 (Ribosome small subunit-dependent GTPase A n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019AA1BA0)

HSP 1 Score: 332 bits (851), Expect = 3.700e-111
Identity = 169/280 (60.36%), Postives = 209/280 (74.64%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPA-AAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV 864
            G VV +FGRQ+ VELA   ++ C  RGKR+ +ACGDRV +A TAP QGV+E+  PR +L YRSD  R+KLIAANVTQIVIVLA  P F+ ELL+RC+AAAE   +  ++ LNK DL   +A A+  L  Y  LGY V+PL+AK DI+PLR  L+G  SVL+GQSGMGKSTIIN L+P A A   E+S AL  GRHTTTHARLYHLDA + +IDSPG+QEFGL H+  +D+A AFIEFRP LG C+F++C+HL EPGCAI  +   G I A+R+E+YRKLV
Sbjct:   10 GLVVGTFGRQYLVELAGPEILTCFPRGKRSTLACGDRVEVARTAPGQGVVEAIDPRSALLYRSDQFRQKLIAANVTQIVIVLAVVPSFYEELLNRCMAAAENQRLSLVIVLNKFDLAGESAAAMDRLALYSDLGYRVIPLSAKRDISPLRPALSGQVSVLIGQSGMGKSTIINALIPGAGATTAEISAALDSGRHTTTHARLYHLDAGADLIDSPGMQEFGLHHLTQQDIAEAFIEFRPLLGHCRFHNCRHLVEPGCAIAQSEAEGSIDARRLEAYRKLV 289          
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Match: A0A1F4AJB8_9PROT (Small ribosomal subunit biogenesis GTPase RsgA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4AJB8_9PROT)

HSP 1 Score: 330 bits (845), Expect = 2.720e-110
Identity = 168/278 (60.43%), Postives = 202/278 (72.66%), Query Frame = 1
Query:   28 GTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIAMTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAELLDRCLAAAEEAGIPALLALNKMDLPAAAQALQSLERYRALGYDVLPLAAKIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGGGRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLGQCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKL 861
            G VVASFGR++ VELAD+T++ CVTRG+R D+ACGDRV  + +   QGVIE  APR +L YRSD  REK++ AN TQI IV A+ P F  +L++RCL AAE  G+ ALL LNK DLP  A A  SL+ Y  LGY ++ L AK D+ PL   L    SVLVGQSGMGKSTI+NRL+PDAAARV E+S AL  GRHTTTHARLY L A S IIDSPG+Q FGL H+  +D A AF+EFRP LG C+F DC+HL EPGCA+  A   G+I A R+ SYR+L
Sbjct:    5 GQVVASFGRRYLVELADATILECVTRGRRHDVACGDRVRASRSDARQGVIEEIAPRSTLLYRSDAHREKIVCANATQIAIVAAAVPAFSHDLINRCLIAAEHGGMSALLVLNKSDLPQTAAARASLQEYTDLGYRLVTLCAKRDLRPLLPHLEARASVLVGQSGMGKSTIVNRLVPDAAARVAEISTALNSGRHTTTHARLYRLGATSSIIDSPGMQAFGLHHLGWQDAAQAFLEFRPWLGHCRFRDCRHLVEPGCAVEEAQRAGKITAGRLASYRRL 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11271.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5F3V4_9PROT2.130e-11759.79Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A1F4DW51_9PROT1.020e-11661.51Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A658BTC0_9PROT2.140e-11663.93Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A6F8VD01_9PROT5.960e-11562.14Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A0S8C6P1_9PROT1.190e-11459.72Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
UPI001BBECE3D2.430e-11360.93Ribosome small subunit-dependent GTPase A n=1 Tax=... [more]
A0A1A9NPW7_9PROT1.720e-11159.93Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]
A0A4R3YAH1_9PROT1.980e-11160.71Small ribosomal subunit biogenesis GTPase RsgA n=2... [more]
UPI0019AA1BA03.700e-11160.36Ribosome small subunit-dependent GTPase A n=1 Tax=... [more]
A0A1F4AJB8_9PROT2.720e-11060.43Small ribosomal subunit biogenesis GTPase RsgA n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11271contigP-wetherbeei_contig11271:2..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog582744.Msip34_1441
Preferred namersgA
PFAMsRsgA_GTPase
Model size864
Max annot lvl206350|Nitrosomonadales
KEGG rclassRC00002,RC00017
KEGG koko:K06949
KEGG ReactionR00615,R02135
KEGG Pathwayko00730,ko01100,map00730,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.37e-109
EggNOG OGsCOG1162@1|root,COG1162@2|Bacteria,1MUEF@1224|Proteobacteria,2VINY@28216|Betaproteobacteria,2KM0D@206350|Nitrosomonadales
EC3.1.3.100
DescriptionOne of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit
Cds size864
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185905.0428286-CDS-P-wetherbeei_contig11271:1..8651683185905.0428286-CDS-P-wetherbeei_contig11271:1..865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11271 2..865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11271.1.1prot_P-wetherbeei_contig11271.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11271 2..865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11271.1.1

>prot_P-wetherbeei_contig11271.1.1 ID=prot_P-wetherbeei_contig11271.1.1|Name=mRNA_P-wetherbeei_contig11271.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
KKTAAPTQPGTVVASFGRQFTVELADSTLIACVTRGKRTDIACGDRVAIA
MTAPDQGVIESTAPRVSLFYRSDIQREKLIAANVTQIVIVLASSPPFHAE
LLDRCLAAAEEAGIPALLALNKMDLPAAAQALQSLERYRALGYDVLPLAA
KIDIAPLRARLAGHTSVLVGQSGMGKSTIINRLLPDAAARVGELSVALGG
GRHTTTHARLYHLDAASHIIDSPGLQEFGLVHVAPEDLAHAFIEFRPHLG
QCKFNDCKHLTEPGCAITAAVERGEIGAQRVESYRKLV
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mRNA from alignment at P-wetherbeei_contig11271:2..865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11271.1.1 ID=mRNA_P-wetherbeei_contig11271.1.1|Name=mRNA_P-wetherbeei_contig11271.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig11271:2..865- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAGACTGCTGCCCCCACCCAGCCAGGAACGGTCGTCGCCAGCTTCGG CCGCCAGTTCACCGTCGAGCTCGCGGATAGCACGCTGATCGCCTGCGTGA CGCGCGGCAAGCGCACCGACATCGCCTGCGGTGACCGGGTTGCTATTGCC ATGACAGCGCCTGATCAAGGTGTCATCGAATCCACCGCGCCGCGCGTTTC GCTTTTTTACCGTTCCGACATTCAGCGCGAAAAGCTGATCGCCGCCAACG TCACGCAAATCGTGATCGTGCTCGCCTCTTCCCCGCCTTTTCATGCTGAA TTGCTGGACCGCTGCCTGGCCGCCGCCGAGGAAGCCGGCATCCCGGCATT GCTCGCGCTCAACAAAATGGACCTGCCGGCTGCCGCGCAGGCGCTGCAAT CGCTGGAGCGTTATCGCGCGCTGGGTTACGACGTGCTGCCGCTCGCCGCC AAAATCGACATCGCACCTTTGCGCGCGCGCCTCGCCGGTCACACCAGCGT GCTGGTCGGGCAATCGGGCATGGGCAAGTCAACCATCATCAACCGCCTGC TGCCCGATGCTGCCGCGCGCGTCGGCGAATTATCGGTCGCGCTCGGCGGC GGACGGCACACGACCACCCACGCGCGGCTCTATCACCTGGATGCAGCAAG CCACATCATCGACTCGCCGGGCCTGCAGGAATTCGGCCTCGTGCATGTGG CGCCCGAGGACCTGGCGCATGCCTTCATCGAGTTCCGCCCGCATCTGGGG CAGTGCAAGTTCAACGACTGCAAGCACCTGACCGAGCCGGGATGCGCGAT CACGGCTGCGGTCGAACGCGGCGAAATCGGCGCCCAGCGGGTGGAGTCGT ACCGCAAGCTCGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11271:2..865-

>mRNA_P-wetherbeei_contig11271.1.1 ID=mRNA_P-wetherbeei_contig11271.1.1|Name=mRNA_P-wetherbeei_contig11271.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig11271:2..865- (Phaeothamnion wetherbeei SAG_119_79)
AAAAAGACTGCTGCCCCCACCCAGCCAGGAACGGTCGTCGCCAGCTTCGG
CCGCCAGTTCACCGTCGAGCTCGCGGATAGCACGCTGATCGCCTGCGTGA
CGCGCGGCAAGCGCACCGACATCGCCTGCGGTGACCGGGTTGCTATTGCC
ATGACAGCGCCTGATCAAGGTGTCATCGAATCCACCGCGCCGCGCGTTTC
GCTTTTTTACCGTTCCGACATTCAGCGCGAAAAGCTGATCGCCGCCAACG
TCACGCAAATCGTGATCGTGCTCGCCTCTTCCCCGCCTTTTCATGCTGAA
TTGCTGGACCGCTGCCTGGCCGCCGCCGAGGAAGCCGGCATCCCGGCATT
GCTCGCGCTCAACAAAATGGACCTGCCGGCTGCCGCGCAGGCGCTGCAAT
CGCTGGAGCGTTATCGCGCGCTGGGTTACGACGTGCTGCCGCTCGCCGCC
AAAATCGACATCGCACCTTTGCGCGCGCGCCTCGCCGGTCACACCAGCGT
GCTGGTCGGGCAATCGGGCATGGGCAAGTCAACCATCATCAACCGCCTGC
TGCCCGATGCTGCCGCGCGCGTCGGCGAATTATCGGTCGCGCTCGGCGGC
GGACGGCACACGACCACCCACGCGCGGCTCTATCACCTGGATGCAGCAAG
CCACATCATCGACTCGCCGGGCCTGCAGGAATTCGGCCTCGTGCATGTGG
CGCCCGAGGACCTGGCGCATGCCTTCATCGAGTTCCGCCCGCATCTGGGG
CAGTGCAAGTTCAACGACTGCAAGCACCTGACCGAGCCGGGATGCGCGAT
CACGGCTGCGGTCGAACGCGGCGAAATCGGCGCCCAGCGGGTGGAGTCGT
ACCGCAAGCTCGTA
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