mRNA_P-wetherbeei_contig10094.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10094.1.1
Unique NamemRNA_P-wetherbeei_contig10094.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10094.1.1 vs. uniprot
Match: D7FS05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS05_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.720e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 SSFESWLEEDLGRLNLDAEVFSGYVAGIMDDPEVPVEERVAAVNELLSGATEE 168
            SSF++WL + L  L LDAEV+ GYV GIM D + P EER+ +V E+LSGA EE
Sbjct:    8 SSFDTWLVDKLDALGLDAEVYGGYVTGIMGDEDNPQEERIESVIEILSGAAEE 60
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BLAST of mRNA_P-wetherbeei_contig10094.1.1 vs. uniprot
Match: A0A6B2E6V8_9DIPT (Coiled-coil domain-containing protein 43 n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2E6V8_9DIPT)

HSP 1 Score: 53.1 bits (126), Expect = 8.260e-7
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 AVSSFESWLEEDLGRLNLDAEVFSGYVAGIMD-DPEVPVEERVAAVNELLSGATE 165
            A   FESWL+  L ++N D  ++  Y+ GI+D D E  VEE+++A+ ELLSG  E
Sbjct:    3 AEEEFESWLKRKLRQINTDESIYGPYIVGILDGDGEEQVEEKISAIEELLSGIIE 57
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BLAST of mRNA_P-wetherbeei_contig10094.1.1 vs. uniprot
Match: A0A1B0D3C6_PHLPP (Coiled-coil domain-containing protein 43 n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0D3C6_PHLPP)

HSP 1 Score: 47.8 bits (112), Expect = 8.350e-5
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   13 SFESWLEEDLGRLNLDAEVFSGYVAGIMD-DPEVPVEERVAAVNELLSG 156
            +F+ WL+  L ++N D  ++  Y+ GI+D D E  VEE++ A+ ELLSG
Sbjct:    7 TFDFWLKRKLRQINTDESIYGPYIVGILDGDGEEQVEEKIGAIEELLSG 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10094.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS05_ECTSI3.720e-1158.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6B2E6V8_9DIPT8.260e-745.45Coiled-coil domain-containing protein 43 n=1 Tax=P... [more]
A0A1B0D3C6_PHLPP8.350e-542.86Coiled-coil domain-containing protein 43 n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10094contigP-wetherbeei_contig10094:34..222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS05
Model size189
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.1e-12
EggNOG OGs29Y8F@1|root,2RXTG@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006970.1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.2453508-CDS-P-wetherbeei_contig10094:33..2221683185854.2453508-CDS-P-wetherbeei_contig10094:33..222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10094 34..222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10094.1.1prot_P-wetherbeei_contig10094.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10094 34..222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10094.1.1

>prot_P-wetherbeei_contig10094.1.1 ID=prot_P-wetherbeei_contig10094.1.1|Name=mRNA_P-wetherbeei_contig10094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MAVSSFESWLEEDLGRLNLDAEVFSGYVAGIMDDPEVPVEERVAAVNELL
SGATEEVGMMVN*
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mRNA from alignment at P-wetherbeei_contig10094:34..222-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10094.1.1 ID=mRNA_P-wetherbeei_contig10094.1.1|Name=mRNA_P-wetherbeei_contig10094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig10094:34..222- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGTCATCGTTCGAGTCGTGGTTGGAAGAGGACCTCGGGCGCCT
GAACTTAGACGCCGAGGTATTTTCTGGATACGTCGCCGGTATAATGGATG
ATCCCGAGGTGCCCGTGGAAGAGCGAGTCGCGGCAGTGAACGAATTACTG
AGTGGAGCGACAGAGGAGGTAGGGATGATGGTGAATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10094:34..222-

>mRNA_P-wetherbeei_contig10094.1.1 ID=mRNA_P-wetherbeei_contig10094.1.1|Name=mRNA_P-wetherbeei_contig10094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig10094:34..222- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGTCATCGTTCGAGTCGTGGTTGGAAGAGGACCTCGGGCGCCT
GAACTTAGACGCCGAGGTATTTTCTGGATACGTCGCCGGTATAATGGATG
ATCCCGAGGTGCCCGTGGAAGAGCGAGTCGCGGCAGTGAACGAATTACTG
AGTGGAGCGACAGAGGAGGTAGGGATGATGGTGAATTAG
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