mRNA_P-wetherbeei_contig1009.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1009.1.1
Unique NamemRNA_P-wetherbeei_contig1009.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: A0A1D1UUN6_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UUN6_RAMVA)

HSP 1 Score: 68.6 bits (166), Expect = 2.100e-9
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:  343 SSEASAALPALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLLFFGAS 516
            S E +   P + A  GAW GA+VIPLDW+RPWQ WP+P   G  AG  VG LLF  AS
Sbjct:  155 SMEKAPLFPGMLAVVGAWCGAVVIPLDWDRPWQAWPIPCCYGAFAGYAVGHLLFISAS 212
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: A0A1Y1Z4R4_9FUNG (PIG-F-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z4R4_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 8.370e-9
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  349 EASAALPALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLLFFGASCLAALRHSKEPR 552
            E  A  P +   FGAW+GA+VIPLDW+RPWQ WP+P V G + G  VG        CLA ++    P+
Sbjct:  159 ERFAYYPMISGVFGAWLGAIVIPLDWDRPWQAWPIPCVLGALLGYTVGI-------CLALIKQDSSPK 219
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: UPI000C6CB4AD (phosphatidylinositol-glycan biosynthesis class F protein-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CB4AD)

HSP 1 Score: 63.9 bits (154), Expect = 1.420e-8
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:  367 PALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLLFFG 510
            P +G   GAW GA VIPLDW+RPWQ WP+P   G + G  VG L+  G
Sbjct:   89 PVIGTIIGAWCGAFVIPLDWDRPWQEWPIPCSVGAVLGCSVGHLILAG 136
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: A0A2P6NTT6_9EUKA (Phosphatidylinositol glycan, class F n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NTT6_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.950e-8
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  349 EASAALPALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLL 501
            E S + P +GA  G+W+GAL IPLDW+RPWQ WP+  V G + G   G L+
Sbjct:  108 ERSVSFPIIGATIGSWIGALPIPLDWDRPWQQWPISCVIGCVVGHSCGVLI 158
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: A0A8H7PRV5_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PRV5_MORIS)

HSP 1 Score: 63.2 bits (152), Expect = 2.190e-8
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  343 SSEASAALPALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTL 498
            +SE +A + A+    GAW+GA+VIPLDW RPWQ WP+  V G I G  +G++
Sbjct:   64 NSEMAAYIQAVSVLVGAWLGAVVIPLDWERPWQQWPISCVLGAIVGQAIGSV 115
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: T0RPX6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RPX6_SAPDV)

HSP 1 Score: 64.7 bits (156), Expect = 3.030e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  337 WAS-SEASAALPALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLL 501
            W S  E  A    LG  FGA++GAL++PLDW+RPWQ WPLP V GG+ G  +G L+
Sbjct:  140 WRSHDEQQATCTFLGTLFGAYIGALLLPLDWDRPWQQWPLPCVYGGVYGHTLGLLV 195
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: A0A1L9RFM0_ASPWE (Uncharacterized protein n=1 Tax=Aspergillus wentii DTO 134E9 TaxID=1073089 RepID=A0A1L9RFM0_ASPWE)

HSP 1 Score: 65.9 bits (159), Expect = 3.420e-8
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  370 ALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLL 501
            ALGAGFGAW GA+ IPLDW+RPWQ +P+ ++ G   G  +GTLL
Sbjct:  224 ALGAGFGAWFGAVPIPLDWDRPWQAFPITIITGAYIGHAIGTLL 267
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: UPI0018850F7D (glycosylphosphatidylinositol anchor biosynthesis protein 11-like isoform X2 n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018850F7D)

HSP 1 Score: 62.4 bits (150), Expect = 4.570e-8
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  370 ALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTL 498
            A GA  GAW+GA VIPLDW+RPWQ+WP+P  AG   G  VG L
Sbjct:   83 AAGALVGAWLGAFVIPLDWDRPWQVWPVPCCAGAQLGSAVGRL 125
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: A0A164MNY2_9CRUS (Putative Phosphatidylinositol-glycan biosynthesis class F protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164MNY2_9CRUS)

HSP 1 Score: 63.5 bits (153), Expect = 8.380e-8
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  388 GAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLL 501
            GAW+GA VIPLDW+RPWQ+WP P+  G + G G+G+LL
Sbjct:  156 GAWLGAFVIPLDWDRPWQVWPEPVGVGAVVGCGLGSLL 193
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BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Match: D7FUR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.830e-8
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  340 ASSEASAALPALGAGFGAWVGALVIPLDWNRPWQMWPLPLVAGGIAGMGVGTLLFFG 510
            A  E  A +PA     GAW+GA+ + LDW +PWQ WPLP+ AGG+ G  +G LL  G
Sbjct:  165 ALHELGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLLLLG 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D1UUN6_RAMVA2.100e-955.17Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A1Y1Z4R4_9FUNG8.370e-945.59PIG-F-domain-containing protein n=1 Tax=Basidiobol... [more]
UPI000C6CB4AD1.420e-854.17phosphatidylinositol-glycan biosynthesis class F p... [more]
A0A2P6NTT6_9EUKA1.950e-850.98Phosphatidylinositol glycan, class F n=1 Tax=Plano... [more]
A0A8H7PRV5_MORIS2.190e-850.00Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
T0RPX6_SAPDV3.030e-853.57Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1L9RFM0_ASPWE3.420e-861.36Uncharacterized protein n=1 Tax=Aspergillus wentii... [more]
UPI0018850F7D4.570e-862.79glycosylphosphatidylinositol anchor biosynthesis p... [more]
A0A164MNY2_9CRUS8.380e-863.16Putative Phosphatidylinositol-glycan biosynthesis ... [more]
D7FUR0_ECTSI8.830e-849.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1009contigP-wetherbeei_contig1009:67..1906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008611949.1
Preferred namePIGF
PFAMsPIG-F
Model size1545
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00089
KEGG koko:K04708,ko:K05287,ko:K12831,ko:K19845,ko:K20405,ko:K22132
KEGG ReactionR02978,R05923,R05924,R08107
KEGG Pathwayko00563,ko00600,ko01100,ko03040,ko04011,ko04150,map00563,map00600,map01100,map03040,map04011,map04150
KEGG ModuleM00065,M00094,M00099,M00352
Hectar predicted targeting categorysignal peptide
GOsGO:0000234,GO:0003674,GO:0003824,GO:0004307,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006665,GO:0006666,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008610,GO:0008654,GO:0008757,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016254,GO:0016491,GO:0016651,GO:0016740,GO:0016741,GO:0016772,GO:0016780,GO:0017169,GO:0019538,GO:0019637,GO:0030447,GO:0031224,GO:0031984,GO:0032259,GO:0034645,GO:0036211,GO:0040007,GO:0042157,GO:0042158,GO:0042175,GO:0042180,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046519,GO:0051377,GO:0055114,GO:0071704,GO:0090407,GO:0097164,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Exons2
Evalue5e-10
EggNOG OGsKOG3144@1|root,KOG3144@2759|Eukaryota
Ec32 ortholog descriptionGPI biosynthesis protein Pig-F
Ec32 orthologEc-19_004260.1
EC1.1.1.102
DescriptionGPI anchor biosynthetic process
Cds size630
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185853.995254-CDS-P-wetherbeei_contig1009:66..5071683185853.995254-CDS-P-wetherbeei_contig1009:66..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1009 67..507 +
1683185854.0043545-CDS-P-wetherbeei_contig1009:802..9911683185854.0043545-CDS-P-wetherbeei_contig1009:802..991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1009 803..991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185854.011554-UTR-P-wetherbeei_contig1009:991..19061683185854.011554-UTR-P-wetherbeei_contig1009:991..1906Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1009 992..1906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1009.1.1prot_P-wetherbeei_contig1009.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1009 67..991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1009.1.1

>prot_P-wetherbeei_contig1009.1.1 ID=prot_P-wetherbeei_contig1009.1.1|Name=mRNA_P-wetherbeei_contig1009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
VPATFRAAARAALVLVLAAYAVAVALGAPLRSGAAQTAASALLLAAAAGP
HLGAAAAGRAPLRVCLQILGYCDGGSGDGSHFEGGKSAAAAGAGYGGSGR
GSDGGGNPLGSFWASSEASAALPALGAGFGAWVGALVIPLDWNRPWQMWP
LPLVAGGIAGMGVGTLLFFGASCLAALRHSKEPRSASAKRRGDRRAEAAA
AGVIGGKCA*
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mRNA from alignment at P-wetherbeei_contig1009:67..1906+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1009.1.1 ID=mRNA_P-wetherbeei_contig1009.1.1|Name=mRNA_P-wetherbeei_contig1009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1840bp|location=Sequence derived from alignment at P-wetherbeei_contig1009:67..1906+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCCGGCGACGTTCCGCGCCGCCGCGCGCGCAGCGCTGGTGCTGGTGCT
GGCGGCGTACGCGGTCGCCGTCGCGCTGGGCGCGCCGCTGCGGTCGGGCG
CCGCCCAGACGGCTGCTTCGGCCCTGCTGCTGGCGGCGGCGGCGGGGCCA
CACCTCGGAGCCGCCGCCGCTGGCAGGGCGCCACTGCGGGTCTGCCTGCA
GATCCTGGGCTACTGCGATGGCGGTAGTGGCGATGGCAGCCATTTTGAAG
GCGGAAAAAGTGCTGCTGCTGCAGGTGCTGGGTACGGCGGCAGTGGCAGG
GGGAGCGATGGAGGTGGCAACCCCCTCGGAAGTTTCTGGGCGAGCTCGGA
GGCTTCGGCGGCGCTGCCGGCGCTGGGGGCCGGGTTCGGGGCCTGGGTGG
GCGCGCTGGTGATACCGTTGGACTGGAACCGTCCGTGGCAGGTATGGTTT
CAAACGTATTGACCGTTCCCAGATCATTTTTTCATGTTTTTTGACCATCC
TGCCTCTAGCGTTACCGGCGGCCTTGCCGGAAGTGCACTGCTCTCCGTTT
TGGACGAAAACGCACCTGCACGTCCAAGTTGAGCCCTCAAAAAGGCGTGA
AACGGGGGTTGAGCTGGTCTTTGCTGCTTTTCGTGGCACTTTATCCCATC
GCCTGTAAGCCACAAAGAATCGTCTCCTGTCAAAATTGTTCTTTTCAATG
CTCTCCCGAAACGCCCTTCTCTTCCCGGCCCGGCAGATGTGGCCGCTCCC
CCTTGTGGCCGGGGGCATTGCTGGCATGGGCGTTGGTACTCTCCTCTTCT
TCGGCGCCTCATGTCTCGCAGCGCTGCGCCACAGCAAGGAGCCGCGATCC
GCATCGGCCAAACGACGCGGCGACAGGAGAGCGGAAGCTGCAGCGGCTGG
GGTGATCGGCGGCAAGTGTGCATAACAGTGGCACGGCACGGGCGGCGGCG
GCGGCAGCGGCGGCGGCAGCCGCAGAGGTGGCTTAGAGAGCAGACGACGG
CGGCGATAACAGCGGCGGCGACAGCAGCGGCCGCAGCGGCTGCAGCGCCA
GCTCTCCTGAAGGCTTCTGCTGTCAAGTCAAGACTAAGGCGGTCTTCTCT
GCTTTCGAGCCCCTTCGCAACGGGGCCAGCATCCTCAGCGGCAGCTGGCG
GCAGCAGCCGCTCCCGTCAGCAGCGGTCCACAGCAGCTGCGGCCCGCGGC
AGCGGCGGCGGCTGCAGCCTGCAGCAGCAGCGGTGACGGTAGCCGCGGCC
GTTGGCAGCAGCCGATGGCGTGCGGCAGCAGTGACGGTGGCGGTCTGGAG
CAGCAAAGGTGGCGGCGGCCGGCGGCAGCAGCAGCGGTGGTGCCCGCTGG
CGTCAGCAGCGGCGGCGGCGGCAGTGGCGGCGGTTGGCTGCATCAGCGCC
GGAGATCGTCCAACTGTGGACAACGATGCAGGTTAGTGGAAGGTGACTCG
CGGGTCACTTCTTTGGGTAGTAAGGGGGTAAAGGAGAGAAGGGGGTTAGA
GAAAGGGGAGGTTGCAGGCGGCGATGGCAGCAACGGCGGCGGGGGCCGCG
GCAGCAGCAGTGGGTGGCGGGCGGCCGCACCAGCACCATGGGCCGTCCCA
TGAGCGACACGATTGCCAGGCACTTGGCGAGAGACGCAGAACGACCGCAT
TGGTTTCATTTGCCGGATGCTGTCACCGTAACGGAGGGAGAGGGGAACGA
AGGAGGAGGGGCAGAATGACCCCCGGAGAGCTGGGGCATTTCCCAGCCAT
GCATCGGCAAGGTTCTCACAGCTCCGGCCACAAAAGAGTTGCCAAACACT
AACGGCTTTGCCAAACTGAATCAATCGACGATGTTCATTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1009:67..1906+

>mRNA_P-wetherbeei_contig1009.1.1 ID=mRNA_P-wetherbeei_contig1009.1.1|Name=mRNA_P-wetherbeei_contig1009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig1009:67..1906+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCCGGCGACGTTCCGCGCCGCCGCGCGCGCAGCGCTGGTGCTGGTGCT
GGCGGCGTACGCGGTCGCCGTCGCGCTGGGCGCGCCGCTGCGGTCGGGCG
CCGCCCAGACGGCTGCTTCGGCCCTGCTGCTGGCGGCGGCGGCGGGGCCA
CACCTCGGAGCCGCCGCCGCTGGCAGGGCGCCACTGCGGGTCTGCCTGCA
GATCCTGGGCTACTGCGATGGCGGTAGTGGCGATGGCAGCCATTTTGAAG
GCGGAAAAAGTGCTGCTGCTGCAGGTGCTGGGTACGGCGGCAGTGGCAGG
GGGAGCGATGGAGGTGGCAACCCCCTCGGAAGTTTCTGGGCGAGCTCGGA
GGCTTCGGCGGCGCTGCCGGCGCTGGGGGCCGGGTTCGGGGCCTGGGTGG
GCGCGCTGGTGATACCGTTGGACTGGAACCGTCCGTGGCAGATGTGGCCG
CTCCCCCTTGTGGCCGGGGGCATTGCTGGCATGGGCGTTGGTACTCTCCT
CTTCTTCGGCGCCTCATGTCTCGCAGCGCTGCGCCACAGCAAGGAGCCGC
GATCCGCATCGGCCAAACGACGCGGCGACAGGAGAGCGGAAGCTGCAGCG
GCTGGGGTGATCGGCGGCAAGTGTGCATAA
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