mRNA_P-wetherbeei_contig1.17.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1.17.1
Unique NamemRNA_P-wetherbeei_contig1.17.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1contigP-wetherbeei_contig1:39442..40979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1538
Hectar predicted targeting categorysignal anchor
Exons1
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185846.7322621-UTR-P-wetherbeei_contig1:39441..396641683185846.7322621-UTR-P-wetherbeei_contig1:39441..39664Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1 39442..39664 +
1683185846.9509516-UTR-P-wetherbeei_contig1:40465..409791683185846.9509516-UTR-P-wetherbeei_contig1:40465..40979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1 40466..40979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185846.8655334-CDS-P-wetherbeei_contig1:39664..404651683185846.8655334-CDS-P-wetherbeei_contig1:39664..40465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1 39665..40465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1.17.1prot_P-wetherbeei_contig1.17.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1 39665..40465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1.17.1

>prot_P-wetherbeei_contig1.17.1 ID=prot_P-wetherbeei_contig1.17.1|Name=mRNA_P-wetherbeei_contig1.17.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MLDSLVLFLEKRITDKFFVFILFFSILIVPILLVESGVEKKVFMFIVSLI
MLVRSISLTGLYNDFPDPIRVLSEDWKNYFYFFSAVWMWICGASWNRFCS
PLVCWLVLSLSFVVEHPFLKFFQYFIWAYSLFIVFGTIIFTSLIENEFFS
NKLKSIFGGNFIHRAGFNVNAPEKNLRRMLRAGLQTIVGVFGLGVAQIVI
DESKVFVSTISENAIRANMEFPLETLEEYKTRRRIILAGSPWNWHLKELR
EPPIAIVEVMPNSKSI*
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mRNA from alignment at P-wetherbeei_contig1:39442..40979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1.17.1 ID=mRNA_P-wetherbeei_contig1.17.1|Name=mRNA_P-wetherbeei_contig1.17.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1538bp|location=Sequence derived from alignment at P-wetherbeei_contig1:39442..40979+ (Phaeothamnion wetherbeei SAG_119_79)
ATTCGTAAGAATTTAAGCTAACTTGTACTAATGTCCAAAAGAATATTTAT
ATTCACTTTAGAACTTTTGTTCTATTTCCGTAGCCTTGTAAAAAAAATGG
TTTTTTATTTAAGTCGATTCAAATTCGACTACAAGGCATTTATGAAAAAA
AATTTTTTTAAAAAGATTTATAATATGTTGGGAGGAGGGGTCGACTCGTT
AATTTTTAAAAAAAAATTTTAGTATGCTTGACTCATTAGTATTATTTTTG
GAAAAAAGAATCACTGATAAATTTTTTGTTTTTATACTTTTTTTTTCTAT
CTTAATAGTCCCAATTCTATTGGTAGAAAGTGGCGTTGAAAAAAAAGTTT
TTATGTTTATTGTCTCTTTAATTATGCTAGTACGATCAATTTCTTTGACT
GGATTATATAATGACTTCCCTGATCCTATTAGAGTTCTCTCTGAGGATTG
GAAAAATTATTTTTATTTTTTTTCTGCAGTTTGGATGTGGATTTGTGGTG
CTTCGTGGAATCGTTTCTGCAGTCCACTCGTTTGCTGGTTAGTTTTGTCA
CTATCTTTTGTAGTAGAACATCCTTTTTTAAAATTCTTTCAGTATTTTAT
TTGGGCCTATAGTTTATTTATAGTGTTCGGAACCATAATATTTACCTCTT
TAATTGAAAATGAATTTTTTTCTAATAAACTGAAATCTATATTTGGGGGA
AATTTTATTCATAGAGCTGGATTTAATGTTAATGCTCCTGAAAAAAATTT
ACGTAGGATGCTACGTGCTGGACTTCAAACTATTGTAGGTGTGTTCGGTT
TAGGAGTTGCTCAAATAGTAATCGATGAATCTAAAGTTTTCGTAAGTACG
ATCTCAGAAAATGCAATACGGGCTAATATGGAATTTCCTCTAGAAACATT
AGAGGAGTATAAAACGCGACGTCGGATAATTTTGGCTGGGTCTCCTTGGA
ATTGGCATTTAAAGGAATTACGAGAACCGCCGATTGCGATTGTAGAGGTT
ATGCCTAATTCGAAAAGTATTTAAATTTAAGGAAGAGAAGAGAAAAACAG
CAAAAGGAAGTATTGGATTTGTAAAAAAAGGACTAAAAACCGTTATTACA
GAAAAAACAAATAAAGTTTTGAATTGTGAAGTATTATCTTGAATTTTTAT
TTCGCTTATTTTCACTTTTGTTTATCTATTTTTAGATAATAATTTTGTTT
ACAATTCCCACTAAAAGTAGGCAAATTGTTTTTATTGGTTTTTTATTTTA
ATTTATTGTACGAGGTACGAGATTAGATACTATGTATCGATATCGGATCA
ATCTAAGCTTATTATTGTATTATTAGACATAGACAGAGACAGATGTCGTT
ATGCTCATCAATTCTATGGTTTTACGTCACGAAATACGGGAAGAGAGCAG
CTAAATTCTTTTTTAAAAAAAGGTCTAATGAGTATATAGAGTTTTTAATT
GTAACAGGTTACAATTTGACTTAATGTCGTTTTCGTTTTTTTAAAAACGG
TGTCTTTTCTTTATCTTTATAAAAATATAACATAAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1:39442..40979+

>mRNA_P-wetherbeei_contig1.17.1 ID=mRNA_P-wetherbeei_contig1.17.1|Name=mRNA_P-wetherbeei_contig1.17.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig1:39442..40979+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGACTCATTAGTATTATTTTTGGAAAAAAGAATCACTGATAAATT
TTTTGTTTTTATACTTTTTTTTTCTATCTTAATAGTCCCAATTCTATTGG
TAGAAAGTGGCGTTGAAAAAAAAGTTTTTATGTTTATTGTCTCTTTAATT
ATGCTAGTACGATCAATTTCTTTGACTGGATTATATAATGACTTCCCTGA
TCCTATTAGAGTTCTCTCTGAGGATTGGAAAAATTATTTTTATTTTTTTT
CTGCAGTTTGGATGTGGATTTGTGGTGCTTCGTGGAATCGTTTCTGCAGT
CCACTCGTTTGCTGGTTAGTTTTGTCACTATCTTTTGTAGTAGAACATCC
TTTTTTAAAATTCTTTCAGTATTTTATTTGGGCCTATAGTTTATTTATAG
TGTTCGGAACCATAATATTTACCTCTTTAATTGAAAATGAATTTTTTTCT
AATAAACTGAAATCTATATTTGGGGGAAATTTTATTCATAGAGCTGGATT
TAATGTTAATGCTCCTGAAAAAAATTTACGTAGGATGCTACGTGCTGGAC
TTCAAACTATTGTAGGTGTGTTCGGTTTAGGAGTTGCTCAAATAGTAATC
GATGAATCTAAAGTTTTCGTAAGTACGATCTCAGAAAATGCAATACGGGC
TAATATGGAATTTCCTCTAGAAACATTAGAGGAGTATAAAACGCGACGTC
GGATAATTTTGGCTGGGTCTCCTTGGAATTGGCATTTAAAGGAATTACGA
GAACCGCCGATTGCGATTGTAGAGGTTATGCCTAATTCGAAAAGTATTTA
A
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