mRNA_P-wetherbeei_contig11008.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11008.2.1
Unique NamemRNA_P-wetherbeei_contig11008.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11008.2.1 vs. uniprot
Match: A0A6H5LGK6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LGK6_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.020e-53
Identity = 148/361 (41.00%), Postives = 187/361 (51.80%), Query Frame = 1 
Query:   43 VDLVLQTVGPAPAQLVFPTLAALDRTRLNRLSRVRFLRLRVQRLVMFASVTSSPEGCGWQLRLRLPPAAVVPVEPPAPVAGGDGDTSGSDGRRGAAMPRRGRAARAEAAGGGPRDVVTVPIPARTSGIS-GRARAGVGAAGMRSXXXXXXXXXXXXXXXXXXXSTARVRRGFGAADLVVGDAALAHEVVCGVDVTDATVQRWTDGGASIDIVLVDGR-DRRPRGAPEAAAASGSAAPTGMVVGGGMVGPDDRVVAVGRLPLRELLASADLSVAATVDLQEVVDFWAAETVRS---GVRGRGGAPLANPYHRRXXXXXXXXXXXXXXXXXXXXXXXXXXTLALGRRSVATVLLSLELLGGQP 1110
            VDL+L   GP PA L FP LAA++R R + L+RVRFLR+R+ RLVMF S+TS+ EG GWQLR RLP  A     PP  V+     T+ +  R G A   +G +AR          VV+VP+P R    + G+ +A   A  +R                    S  RVRRGFGA DLVVG+ +L  E+VC VDV D  V +W D   +++ +LVDGR D  PR  P   A + +            VGP DRV AV   PLR+L+ SADL VAAT+DL EV DFWA E  R+   G  GRGG PL NPY                              L LG R+V  + + LEL+ G+P
Sbjct:  579 VDLLLSAAGPPPASLAFPALAAMERRRADSLARVRFLRIRLSRLVMFGSMTSAAEGHGWQLRFRLPAFAA----PPGRVS-----TAAAGHRAGVAQASKGASARNAR-------VVSVPVPPRVPASTLGKGKA---APAVRRGRSTAPGMTTTATSSRSATSVLRVRRGFGACDLVVGETSLLEELVCAVDVDDTCVAQWMD--TAVEFLLVDGRTDGAPR--PRLPAKNHNHPHLRKKQRSSTVGPGDRVAAVATFPLRDLVLSADLGVAATLDLIEVSDFWATEDARAAAAGRTGRGGRPLRNPYRS-------------------DDGGGGARPLVLGDRAVGALAIVLELVPGEP 897
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BLAST of mRNA_P-wetherbeei_contig11008.2.1 vs. uniprot
Match: A0A835YTA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.100e-30
Identity = 118/360 (32.78%), Postives = 158/360 (43.89%), Query Frame = 1 
Query:   40 AVDLVLQTVGPAPAQLVFPTLAALDRTRLNRLSRVRFLRLRVQRLVMFASVTSSPEGCGWQLRLRLPPAAVVPVEPPAPVAGGDGDTSGSDGRRGAAMPRRGRAARAEAAGGGPRDVVTVPIPARTSGISGRARAGVGAAGMRSXXXXXXXXXXXXXXXXXXXSTARVRRGFGAADLVVGDAALAHEVVCGVDVTDATVQRWTDGGASIDIVLVDGRDRRPRGAPEAAAASGSAAPTGMVVGGG--MVGPDDRVVAVGRLPLRELLASADLSVAATVDLQEVVDFWA--AETVRSGVRGRGGAPLANPYHRRXXXXXXXXXXXXXXXXXXXXXXXXXXTLALGRRSVATVLLSLELLGGQ 1107
            AVDL+L   GP P+ L FP+L+ L+R RL+ L RVRF+R+R+ RLVMF S+T++PEG GWQLR RLPP A +PV     V+  DGD +                                            +R G G  G                         RVRR +GAADL +G+  L  E VC +++ DAT  RW D  A++D++LVDG  +   G P                     +    DRVV + R+PLR LL S +L VAA+ D+ EV+DFW           R     PL NPY  +                           L LG+R+V  +  +LELL G+
Sbjct:  149 AVDLLLAMAGPPPSTLAFPSLSMLERARLDALQRVRFVRVRLHRLVMFGSMTAAPEGHGWQLRYRLPPGA-MPV-----VSVTDGDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRPG-GRVGRGKERRQAPQPML------------RVRRSYGAADLTIGETTLYEETVCAIELDDATCCRWMD--ATLDVLLVDGAHK---GLPXXXXXXXXXXXXXXXXXXXXPLAASQDRVVGLARVPLRNLLLSPELRVAASADIIEVIDFWGEGGGXXXXXXRRAQQPPLHNPYRGKGLEDTD---------------------LMLGKRAVGALAATLELLPGE 463
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGK6_9PHAE3.020e-5341.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTA2_9STRA2.100e-3032.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11008contigP-wetherbeei_contig11008:805..2061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1111
Hectar predicted targeting categoryother localisation
Exons2
Cds size1110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185894.045059-CDS-P-wetherbeei_contig11008:804..11861683185894.045059-CDS-P-wetherbeei_contig11008:804..1186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11008 805..1186 -
1683185894.0558035-CDS-P-wetherbeei_contig11008:1333..20611683185894.0558035-CDS-P-wetherbeei_contig11008:1333..2061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11008 1334..2061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11008.2.1prot_P-wetherbeei_contig11008.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11008 805..2061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11008.2.1

>prot_P-wetherbeei_contig11008.2.1 ID=prot_P-wetherbeei_contig11008.2.1|Name=mRNA_P-wetherbeei_contig11008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=370bp
ASITGEGGPLADGAVDLVLQTVGPAPAQLVFPTLAALDRTRLNRLSRVRF
LRLRVQRLVMFASVTSSPEGCGWQLRLRLPPAAVVPVEPPAPVAGGDGDT
SGSDGRRGAAMPRRGRAARAEAAGGGPRDVVTVPIPARTSGISGRARAGV
GAAGMRSHGGGGRGAAAGASAAAVAASTARVRRGFGAADLVVGDAALAHE
VVCGVDVTDATVQRWTDGGASIDIVLVDGRDRRPRGAPEAAAASGSAAPT
GMVVGGGMVGPDDRVVAVGRLPLRELLASADLSVAATVDLQEVVDFWAAE
TVRSGVRGRGGAPLANPYHRRGGGGGGYENNGSGWAGGSGGGGGGGGTLA
LGRRSVATVLLSLELLGGQP
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mRNA from alignment at P-wetherbeei_contig11008:805..2061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11008.2.1 ID=mRNA_P-wetherbeei_contig11008.2.1|Name=mRNA_P-wetherbeei_contig11008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1257bp|location=Sequence derived from alignment at P-wetherbeei_contig11008:805..2061- (Phaeothamnion wetherbeei SAG_119_79)
GCGTCTATCACCGGCGAGGGCGGGCCGCTGGCGGATGGCGCGGTCGACCT
GGTGCTGCAGACAGTCGGGCCGGCGCCCGCCCAGCTGGTATTCCCGACGC
TGGCGGCGCTGGACCGAACGCGGCTGAATCGCCTATCGCGCGTCCGCTTC
CTGCGGCTGCGGGTCCAGCGGCTGGTCATGTTTGCGTCTGTCACGTCCTC
CCCGGAAGGCTGCGGATGGCAGCTTCGCTTGCGGCTGCCGCCAGCGGCTG
TCGTGCCAGTCGAGCCACCGGCGCCAGTGGCGGGCGGCGACGGCGATACA
AGCGGCAGCGACGGCCGTCGAGGAGCGGCGATGCCAAGAAGGGGAAGAGC
AGCAAGGGCAGAGGCGGCAGGCGGCGGCCCGAGGGACGTTGTAACCGTCC
CGATCCCAGCTCGAACAAGCGGCATCAGCGGCCGGGCCCGCGCCGGCGTC
GGCGCTGCCGGGATGCGCTCGCACGGCGGCGGAGGACGAGGGGCAGCTGC
GGGGGCGTCGGCAGCGGCAGTGGCGGCGTCAACAGCGCGGGTGCGTCGCG
GCTTCGGCGCCGCCGACCTCGTGGTCGGGGACGCGGCCCTGGCGCACGAG
GTGGTGTGCGGCGTTGACGTGACGGACGCCACCGTCCAGCGCTGGACAGA
TGGCGGCGCTTCGATCGACATCGTTCTCGTCGACGGTCGTGACCGCCGTC
CGCGAGGCGCCCCTGAGGCAGCCGCCGCGTCCTCACCTTTCTCTTCCACA
GCACCGGTAGCGGCGACGGCGGCGGCGGCGGCGGCCTTCGGCGTCGGCGC
CGGCAGCTTTGGCGTCAGCACCAGCAGCTTTGGCGCCGGCGGCGACGGCG
GTCCCGGCGGCGGTGGCGGCGGCAGTAGCGGTAGTGCCGCCCCGACCGGC
ATGGTCGTCGGCGGCGGCATGGTAGGGCCCGACGACCGCGTCGTCGCCGT
CGGCCGGCTGCCGCTGCGCGAGTTGCTGGCGTCGGCGGACCTCTCCGTCG
CCGCCACGGTCGACCTGCAGGAAGTGGTCGATTTCTGGGCGGCCGAGACC
GTCCGCAGCGGCGTCCGCGGCCGTGGTGGCGCGCCGCTGGCGAACCCATA
CCACCGCCGTGGCGGTGGCGGCGGCGGCTACGAGAACAACGGCAGCGGCT
GGGCGGGCGGTAGCGGCGGCGGCGGTGGTGGCGGCGGGACGCTGGCCCTC
GGCAGGCGCTCGGTTGCGACGGTCTTGCTCAGCCTTGAACTGCTGGGCGG
GCAGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11008:805..2061-

>mRNA_P-wetherbeei_contig11008.2.1 ID=mRNA_P-wetherbeei_contig11008.2.1|Name=mRNA_P-wetherbeei_contig11008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1110bp|location=Sequence derived from alignment at P-wetherbeei_contig11008:805..2061- (Phaeothamnion wetherbeei SAG_119_79)
GCGTCTATCACCGGCGAGGGCGGGCCGCTGGCGGATGGCGCGGTCGACCT
GGTGCTGCAGACAGTCGGGCCGGCGCCCGCCCAGCTGGTATTCCCGACGC
TGGCGGCGCTGGACCGAACGCGGCTGAATCGCCTATCGCGCGTCCGCTTC
CTGCGGCTGCGGGTCCAGCGGCTGGTCATGTTTGCGTCTGTCACGTCCTC
CCCGGAAGGCTGCGGATGGCAGCTTCGCTTGCGGCTGCCGCCAGCGGCTG
TCGTGCCAGTCGAGCCACCGGCGCCAGTGGCGGGCGGCGACGGCGATACA
AGCGGCAGCGACGGCCGTCGAGGAGCGGCGATGCCAAGAAGGGGAAGAGC
AGCAAGGGCAGAGGCGGCAGGCGGCGGCCCGAGGGACGTTGTAACCGTCC
CGATCCCAGCTCGAACAAGCGGCATCAGCGGCCGGGCCCGCGCCGGCGTC
GGCGCTGCCGGGATGCGCTCGCACGGCGGCGGAGGACGAGGGGCAGCTGC
GGGGGCGTCGGCAGCGGCAGTGGCGGCGTCAACAGCGCGGGTGCGTCGCG
GCTTCGGCGCCGCCGACCTCGTGGTCGGGGACGCGGCCCTGGCGCACGAG
GTGGTGTGCGGCGTTGACGTGACGGACGCCACCGTCCAGCGCTGGACAGA
TGGCGGCGCTTCGATCGACATCGTTCTCGTCGACGGTCGTGACCGCCGTC
CGCGAGGCGCCCCTGAGGCAGCCGCCGCTAGCGGTAGTGCCGCCCCGACC
GGCATGGTCGTCGGCGGCGGCATGGTAGGGCCCGACGACCGCGTCGTCGC
CGTCGGCCGGCTGCCGCTGCGCGAGTTGCTGGCGTCGGCGGACCTCTCCG
TCGCCGCCACGGTCGACCTGCAGGAAGTGGTCGATTTCTGGGCGGCCGAG
ACCGTCCGCAGCGGCGTCCGCGGCCGTGGTGGCGCGCCGCTGGCGAACCC
ATACCACCGCCGTGGCGGTGGCGGCGGCGGCTACGAGAACAACGGCAGCG
GCTGGGCGGGCGGTAGCGGCGGCGGCGGTGGTGGCGGCGGGACGCTGGCC
CTCGGCAGGCGCTCGGTTGCGACGGTCTTGCTCAGCCTTGAACTGCTGGG
CGGGCAGCCG
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