mRNA_P-wetherbeei_contig10068.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10068.1.1
Unique NamemRNA_P-wetherbeei_contig10068.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: UPI00083C4A4D (general transcription factor 3C polypeptide 5 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C4A4D)

HSP 1 Score: 72.8 bits (177), Expect = 3.850e-10
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHI---VAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTSA 543
            ++ +F+ RP+WS+  L+ +T      T+   +HI   VAY   NGPWR  WIR+GY P  DP A+  Q LD+R+ S+
Sbjct:  255 LKELFEERPIWSRQALLYDT----GFTVEQLKHILPKVAYYYLNGPWRVMWIRFGYNPKKDPNAKIYQTLDIRIRSS 327
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A8J2RZJ6_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RZJ6_9CRUS)

HSP 1 Score: 72.4 bits (176), Expect = 5.190e-10
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTSAILNE 555
            ++ MF+ RPVW+K+ LI       ++++      VAY  TNGPWR  W+R GY P  DP+AR  Q LD R++    N+
Sbjct:  275 IKKMFEERPVWTKAALIYNVAGVDKNSLRFILASVAYYFTNGPWRNAWVRIGYDPRKDPEARIYQILDYRISQNYRNK 352
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A5J4N6Y1_9TREM (General transcription factor 3C polypeptide 5 (Transcription factor C subunit 1) (Fragment) n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N6Y1_9TREM)

HSP 1 Score: 68.6 bits (166), Expect = 6.460e-9
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIV-AYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTSAIL 549
            ++ +F  RPVW ++ L+       + T+  C  +  AY    GPW + W+RYGY P  DP+AR+ Q +D R+ S +L
Sbjct:  242 LEELFNSRPVWVRNALVHHLGTESRQTIFKCGILAFAYYFVRGPWGRTWVRYGYDPRTDPEARYFQVIDFRIKSHVL 318
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: E9FVE5_DAPPU (Uncharacterized protein n=3 Tax=Daphnia TaxID=6668 RepID=E9FVE5_DAPPU)

HSP 1 Score: 68.6 bits (166), Expect = 8.570e-9
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  331 MFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTSAILNE 555
            MF+ RPVW+K+ L  +     ++++      VAY  T GPWR  W+R GY P  DP+AR  Q LD R++    N+
Sbjct:  254 MFEERPVWTKAALTYQVAGVDKNSLRFILASVAYYFTTGPWRNAWVRIGYDPRKDPEARIYQILDFRISQNYRNK 328
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A0L0HHZ6_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HHZ6_SPIPD)

HSP 1 Score: 67.4 bits (163), Expect = 2.130e-8
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVR 531
            M+ +FQ RP+W++  L        ++ M     I AY AT+GPWR  WIRYGY P  D +AR  Q +DVR
Sbjct:  259 MRALFQERPIWTRLALHNSMPPAYRNLMKRLMPIHAYVATSGPWRDCWIRYGYDPRRDREARLYQIIDVR 328
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A397SYC3_9GLOM (RNA polymerase III transcription factor IIIC subunit-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SYC3_9GLOM)

HSP 1 Score: 66.6 bits (161), Expect = 3.590e-8
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVT 537
            M  +F+ RP+W++  L        +  +     +VAY  +NGPWR  WIRYGY P  + +ARF Q LD+R T
Sbjct:  240 MNKLFEDRPIWTRLALENNLPSNDKRNIKRLLPLVAYLMSNGPWRDCWIRYGYDPRLNQEARFYQLLDIRNT 311
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A162T0L4_9CRUS (Lethal (2) 37Cd n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A162T0L4_9CRUS)

HSP 1 Score: 66.2 bits (160), Expect = 5.170e-8
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTSAILNE 555
            ++ MF+ RPVW+K+ L        ++++       AY  T GPWR  W+R GY P  DP+AR  Q LD R++    N+
Sbjct:  307 IRKMFEERPVWTKAALTYHVAGVDKNSLRFILASAAYYFTTGPWRNAWVRIGYDPRQDPEARIHQILDFRISQNFRNK 384
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A482V8K9_9CUCU (General transcription factor 3C polypeptide 5 n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482V8K9_9CUCU)

HSP 1 Score: 65.9 bits (159), Expect = 7.410e-8
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRV 534
            ++ +F+ RP+W+K+ +   T    +H+      +VAY   NGPWR  W+++GY P  DPQAR  Q LD R+
Sbjct:  319 VKQLFEERPIWTKAAIRYNTGLTDEHSKVILP-VVAYYFINGPWRISWVKFGYDPRRDPQARIYQTLDYRI 388
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A482WL55_LAOST (Uncharacterized protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WL55_LAOST)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-7
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  289 PLLRRYMCVRFM--------QHMFQRRPVWSKSELIRETREWGQHTMNDCEHI---VAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTS 540
            P   +Y+ ++F+        +  F+RRP+WSK+ LI ET+    ++++  +++   VAY    GP+R  W+R GY P  DP +R  Q LD R+ S
Sbjct:  220 PSALKYLELKFLAMDHYEKIKQCFERRPIWSKTALIYETK----YSIDKIKYLLPSVAYHFVTGPFRVMWVRIGYDPRKDPSSRIYQTLDYRIPS 310
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BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Match: A0A5E4QXI0_9NEOP (Uncharacterized protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4QXI0_9NEOP)

HSP 1 Score: 64.3 bits (155), Expect = 1.800e-7
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:  322 MQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGPWRQFWIRYGYTPHADPQARFLQALDVRVTSAILN 552
            ++ MF+ RP+WS S L++      + ++      +AY    GPWR  W+RYGY P  +P AR  Q LD R+   +L+
Sbjct:  248 VKKMFEDRPIWSSS-LVKHLTNIKEPSLRMIFPCLAYYLKTGPWRLLWVRYGYDPRKEPNARIYQTLDFRLRHTVLS 323
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10068.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00083C4A4D3.850e-1041.56general transcription factor 3C polypeptide 5 n=1 ... [more]
A0A8J2RZJ6_9CRUS5.190e-1041.03Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A5J4N6Y1_9TREM6.460e-936.36General transcription factor 3C polypeptide 5 (Tra... [more]
E9FVE5_DAPPU8.570e-940.00Uncharacterized protein n=3 Tax=Daphnia TaxID=6668... [more]
A0A0L0HHZ6_SPIPD2.130e-844.29Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A397SYC3_9GLOM3.590e-840.28RNA polymerase III transcription factor IIIC subun... [more]
A0A162T0L4_9CRUS5.170e-837.18Lethal (2) 37Cd n=2 Tax=Daphnia magna TaxID=35525 ... [more]
A0A482V8K9_9CUCU7.410e-839.44General transcription factor 3C polypeptide 5 n=1 ... [more]
A0A482WL55_LAOST1.080e-734.74Uncharacterized protein n=1 Tax=Laodelphax striate... [more]
A0A5E4QXI0_9NEOP1.800e-736.36Uncharacterized protein n=1 Tax=Leptidea sinapis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10068contigP-wetherbeei_contig10068:431..2188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6669.EFX88540
Preferred nameGTF3C5
PFAMsTau95
Model size1285
Max annot lvl33208|Metazoa
KEGG koko:K15202
Hectar predicted targeting categoryother localisation
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009888,GO:0009987,GO:0010467,GO:0014706,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0030154,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035914,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060537,GO:0060538,GO:0061061,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Exons2
Evalue1.41e-09
EggNOG OGsKOG2473@1|root,KOG2473@2759|Eukaryota,38FWJ@33154|Opisthokonta,3BCJU@33208|Metazoa,3CRZV@33213|Bilateria,41W70@6656|Arthropoda
DescriptionGeneral transcription factor 3C polypeptide
Cds size1284
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.873118-CDS-P-wetherbeei_contig10068:430..8701683185852.873118-CDS-P-wetherbeei_contig10068:430..870Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10068 431..870 +
1683185852.8847828-CDS-P-wetherbeei_contig10068:1344..21881683185852.8847828-CDS-P-wetherbeei_contig10068:1344..2188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10068 1345..2188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10068.1.1prot_P-wetherbeei_contig10068.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10068 431..2188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10068.1.1

>prot_P-wetherbeei_contig10068.1.1 ID=prot_P-wetherbeei_contig10068.1.1|Name=mRNA_P-wetherbeei_contig10068.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=428bp
MTTGSFGAPAPTAPKAVQKILADMAKANIPRIGGVGVGGGSSDDGGEEGD
GSNEEGSVDGDADSGDAACGKAGGDDGDDLAAAEAALLAGIHASTDPLLR
RYMCVRFMQHMFQRRPVWSKSELIRETREWGQHTMNDCEHIVAYKATNGP
WRQFWIRYGYTPHADPQARFLQALDVRVTSAILNEWYRLFGLPPPPLPKK
KSPGAADDCDDDGANEDGDDGGADDGAGDDGGAGGGCGVGGGREVEDEAV
GVGMRRRGSILWAFQRPIARQMRIPMRCLAPRALQMTVLRAPRVDKPSQT
HGWFSAETVKQLRGAVIRHVQDQAEAYARTHHADAAGAGAGVVSTLLAPA
RSIAGGGVGGPAAAAGDAPLSEEEFMRLAAEMGPKATIILAAALPIPRHG
KGQAGGPNPSAASAASAANPAAGAGTGA
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mRNA from alignment at P-wetherbeei_contig10068:431..2188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10068.1.1 ID=mRNA_P-wetherbeei_contig10068.1.1|Name=mRNA_P-wetherbeei_contig10068.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1758bp|location=Sequence derived from alignment at P-wetherbeei_contig10068:431..2188+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACAGGCTCGTTTGGCGCCCCGGCGCCTACGGCGCCGAAGGCGGT
GCAAAAGATCCTCGCGGACATGGCCAAAGCAAACATTCCGAGGATCGGCG
GCGTCGGCGTCGGCGGCGGCAGCAGCGACGACGGCGGCGAGGAAGGCGAT
GGCAGCAACGAGGAAGGCAGCGTGGACGGTGATGCCGACAGCGGTGATGC
GGCATGCGGCAAGGCCGGCGGCGACGACGGGGACGACCTGGCAGCGGCGG
AGGCGGCGTTGCTGGCGGGGATCCACGCGAGCACGGACCCGCTGCTGCGG
CGCTACATGTGCGTGCGGTTCATGCAGCACATGTTCCAGCGGCGACCCGT
GTGGTCCAAGTCGGAGCTGATCCGGGAGACGCGCGAGTGGGGCCAGCACA
CCATGAATGACTGCGAGCACATTGTCGCCTACAAGGCCACGTACGTTTGC
TAGAATGGTCTTAATGGTCTTACCGGTCGTGACAGTGGTAATGCTTGTAC
GGGACGATGTTCACCTGTTTTCCCTGGGTGCGAGCACATACGGACGGTTC
TCCTTGTGGCGGCATCGTGGCATTTGGCTTGCTTGGAAATGTTCGGTTTC
TATGCGTTCCTGCGTTCAAGTGTTCGCGCGCCCCCCGGTGTGGGGCATGA
ATTGACCTAGGGGTTCTGAATTGGGTTGGCGTGCAGATGCAGCGCATGGC
ACGTTGTGCGACACAACCTTTTTTCTCTTTCCGATCGTTCCCCTCTGTCC
TTTTCTTCGCACTTCTTTCTCTTCTCTCAGGATCTCTCTTTCGTCTGTTG
ATGCCCTCATTCTCGTTATATTTTTATTCTTTAACCCGGCCGTTTCCTCC
CTCTGTTCTTCCCTTTCTTCTTCCTTTTCTTTTGCCCCCCCGTCTGTTTC
ATGCCCATGATCAGGAACGGCCCCTGGCGGCAGTTCTGGATTCGCTACGG
ATACACGCCGCATGCGGACCCACAGGCGCGCTTCCTGCAGGCGCTCGACG
TCCGCGTCACATCCGCCATTCTCAACGAGTGGTATCGCCTCTTCGGGTTG
CCGCCGCCGCCGCTGCCGAAAAAGAAGAGCCCCGGTGCGGCCGACGACTG
CGACGACGACGGCGCCAACGAAGACGGCGACGACGGCGGCGCCGACGACG
GCGCCGGCGATGACGGCGGGGCCGGCGGCGGCTGTGGGGTGGGCGGCGGC
AGGGAGGTGGAAGATGAGGCGGTCGGCGTCGGCATGAGGCGGCGCGGCAG
CATCCTCTGGGCATTCCAGCGCCCCATCGCCCGGCAGATGCGCATCCCGA
TGCGGTGCCTGGCGCCGCGCGCGCTGCAGATGACCGTGCTCCGGGCGCCG
CGCGTGGACAAGCCTTCTCAGACCCACGGCTGGTTCTCCGCCGAGACCGT
AAAGCAGCTCCGGGGCGCCGTCATACGCCACGTCCAAGATCAGGCGGAGG
CCTACGCGCGGACGCACCATGCGGACGCGGCGGGTGCCGGCGCCGGCGTC
GTAAGTACGCTGCTGGCGCCGGCGCGGTCGATTGCGGGAGGAGGAGTTGG
GGGGCCAGCAGCGGCGGCGGGTGATGCCCCGCTTTCCGAAGAGGAGTTCA
TGCGGCTGGCGGCGGAGATGGGGCCAAAAGCCACGATCATCTTGGCGGCG
GCGCTGCCCATTCCGAGGCACGGGAAGGGGCAGGCGGGCGGGCCCAACCC
TTCGGCTGCCAGCGCCGCCAGCGCGGCAAACCCAGCGGCGGGCGCCGGCA
CCGGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10068:431..2188+

>mRNA_P-wetherbeei_contig10068.1.1 ID=mRNA_P-wetherbeei_contig10068.1.1|Name=mRNA_P-wetherbeei_contig10068.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig10068:431..2188+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGACAGGCTCGTTTGGCGCCCCGGCGCCTACGGCGCCGAAGGCGGT
GCAAAAGATCCTCGCGGACATGGCCAAAGCAAACATTCCGAGGATCGGCG
GCGTCGGCGTCGGCGGCGGCAGCAGCGACGACGGCGGCGAGGAAGGCGAT
GGCAGCAACGAGGAAGGCAGCGTGGACGGTGATGCCGACAGCGGTGATGC
GGCATGCGGCAAGGCCGGCGGCGACGACGGGGACGACCTGGCAGCGGCGG
AGGCGGCGTTGCTGGCGGGGATCCACGCGAGCACGGACCCGCTGCTGCGG
CGCTACATGTGCGTGCGGTTCATGCAGCACATGTTCCAGCGGCGACCCGT
GTGGTCCAAGTCGGAGCTGATCCGGGAGACGCGCGAGTGGGGCCAGCACA
CCATGAATGACTGCGAGCACATTGTCGCCTACAAGGCCACGAACGGCCCC
TGGCGGCAGTTCTGGATTCGCTACGGATACACGCCGCATGCGGACCCACA
GGCGCGCTTCCTGCAGGCGCTCGACGTCCGCGTCACATCCGCCATTCTCA
ACGAGTGGTATCGCCTCTTCGGGTTGCCGCCGCCGCCGCTGCCGAAAAAG
AAGAGCCCCGGTGCGGCCGACGACTGCGACGACGACGGCGCCAACGAAGA
CGGCGACGACGGCGGCGCCGACGACGGCGCCGGCGATGACGGCGGGGCCG
GCGGCGGCTGTGGGGTGGGCGGCGGCAGGGAGGTGGAAGATGAGGCGGTC
GGCGTCGGCATGAGGCGGCGCGGCAGCATCCTCTGGGCATTCCAGCGCCC
CATCGCCCGGCAGATGCGCATCCCGATGCGGTGCCTGGCGCCGCGCGCGC
TGCAGATGACCGTGCTCCGGGCGCCGCGCGTGGACAAGCCTTCTCAGACC
CACGGCTGGTTCTCCGCCGAGACCGTAAAGCAGCTCCGGGGCGCCGTCAT
ACGCCACGTCCAAGATCAGGCGGAGGCCTACGCGCGGACGCACCATGCGG
ACGCGGCGGGTGCCGGCGCCGGCGTCGTAAGTACGCTGCTGGCGCCGGCG
CGGTCGATTGCGGGAGGAGGAGTTGGGGGGCCAGCAGCGGCGGCGGGTGA
TGCCCCGCTTTCCGAAGAGGAGTTCATGCGGCTGGCGGCGGAGATGGGGC
CAAAAGCCACGATCATCTTGGCGGCGGCGCTGCCCATTCCGAGGCACGGG
AAGGGGCAGGCGGGCGGGCCCAACCCTTCGGCTGCCAGCGCCGCCAGCGC
GGCAAACCCAGCGGCGGGCGCCGGCACCGGCGCC
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