mRNA_P-wetherbeei_contig10061.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10061.1.1
Unique NamemRNA_P-wetherbeei_contig10061.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10061contigP-wetherbeei_contig10061:1069..1945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size740
Hectar predicted targeting categoryother localisation
Exons2
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.670035-UTR-P-wetherbeei_contig10061:1068..12401683185852.670035-UTR-P-wetherbeei_contig10061:1068..1240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10061 1069..1240 -
1683185852.7188592-UTR-P-wetherbeei_contig10061:1869..19451683185852.7188592-UTR-P-wetherbeei_contig10061:1869..1945Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10061 1870..1945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185852.688157-CDS-P-wetherbeei_contig10061:1240..15211683185852.688157-CDS-P-wetherbeei_contig10061:1240..1521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10061 1241..1521 -
1683185852.70533-CDS-P-wetherbeei_contig10061:1658..18691683185852.70533-CDS-P-wetherbeei_contig10061:1658..1869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10061 1659..1869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10061.1.1prot_P-wetherbeei_contig10061.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10061 1241..1869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10061.1.1

>prot_P-wetherbeei_contig10061.1.1 ID=prot_P-wetherbeei_contig10061.1.1|Name=mRNA_P-wetherbeei_contig10061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MKRWERGKTGPGGRLSVADRAWRKSVCVGPGAGAGSSCSDGDHGTVSRLR
RIQVRSWRTKMMSCRRRRRRRNWRRRGCTRTHLAAECEGWRGRQQHLGCR
SRGAFARLPGCGPRPQRVGGAIHPRPQPSRKILFAFAPSNCPHYAALAIL
RSLVVTWPRSEGR*
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mRNA from alignment at P-wetherbeei_contig10061:1069..1945-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10061.1.1 ID=mRNA_P-wetherbeei_contig10061.1.1|Name=mRNA_P-wetherbeei_contig10061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=877bp|location=Sequence derived from alignment at P-wetherbeei_contig10061:1069..1945- (Phaeothamnion wetherbeei SAG_119_79)
CTGATGCAGTACCGATGATGGCAGCCGAGAAGGCGGTAGAGACAATGCCG
CCGGCGGTGGCGGCTGCGCCGGCAGCATGAAACGCTGGGAGCGCGGGAAG
ACTGGCCCCGGCGGCCGCCTTTCGGTGGCCGACAGGGCGTGGCGCAAGTC
AGTGTGCGTGGGACCCGGTGCTGGCGCCGGCAGCAGCTGCAGCGACGGCG
ACCATGGGACGGTGTCGAGGCTGCGACGGATCCAAGTCAGGTCCTGGCGG
ACGAAGATGATGTCCTGCCGCCGCCGCCGCCGTCGCCGCCGTTGTTGCGG
TCGCTGCTGCGCCTGGCCAAATCCTGTCGGCGGTGCTCCCTCCTTGCATC
GCAAAGAGCAAGCAGGACCGGGCATCTTTCCTTTCACAGGAATGACTGCT
GTATTTTCCTTTCCTGCGGTCAAGGCAACTGGCGGAGGCGCGGCTGCACA
CGGACGCACCTCGCGGCCGAATGTGAAGGATGGCGTGGACGGCAGCAACA
TCTTGGATGCCGCAGCCGTGGCGCATTCGCACGCCTGCCCGGCTGCGGTC
CGCGGCCGCAACGGGTTGGGGGCGCTATCCATCCCCGGCCCCAGCCAAGT
CGTAAAATACTCTTCGCTTTTGCTCCGAGCAATTGTCCCCATTACGCGGC
TCTGGCGATTCTCCGGAGTCTCGTAGTCACCTGGCCCAGGAGTGAGGGCC
GGTGAAGAAGCTGTGGCAACGGGAAAGCGCGCCGATGGGGCTCGGTGCAG
CCGACTGTCGGTGTCTGAGCTCCTCTCCAAGCGAATCACGGGTTCCGAGC
GAATCAAGGGTCGCGAAGACGCGCGCACCGCCGCCATCGATTTTACTCGC
CTCATTCCAGTATGAAACAGGGCCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10061:1069..1945-

>mRNA_P-wetherbeei_contig10061.1.1 ID=mRNA_P-wetherbeei_contig10061.1.1|Name=mRNA_P-wetherbeei_contig10061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig10061:1069..1945- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGCTGGGAGCGCGGGAAGACTGGCCCCGGCGGCCGCCTTTCGGT
GGCCGACAGGGCGTGGCGCAAGTCAGTGTGCGTGGGACCCGGTGCTGGCG
CCGGCAGCAGCTGCAGCGACGGCGACCATGGGACGGTGTCGAGGCTGCGA
CGGATCCAAGTCAGGTCCTGGCGGACGAAGATGATGTCCTGCCGCCGCCG
CCGCCGTCGCCGCAACTGGCGGAGGCGCGGCTGCACACGGACGCACCTCG
CGGCCGAATGTGAAGGATGGCGTGGACGGCAGCAACATCTTGGATGCCGC
AGCCGTGGCGCATTCGCACGCCTGCCCGGCTGCGGTCCGCGGCCGCAACG
GGTTGGGGGCGCTATCCATCCCCGGCCCCAGCCAAGTCGTAAAATACTCT
TCGCTTTTGCTCCGAGCAATTGTCCCCATTACGCGGCTCTGGCGATTCTC
CGGAGTCTCGTAGTCACCTGGCCCAGGAGTGAGGGCCGGTGA
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