mRNA_P-wetherbeei_contig21410.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21410.1.1
Unique NamemRNA_P-wetherbeei_contig21410.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A1F4CJ76_9PROT (Thioredoxin reductase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CJ76_9PROT)

HSP 1 Score: 399 bits (1025), Expect = 6.140e-138
Identity = 196/248 (79.03%), Postives = 220/248 (88.71%), Query Frame = 1
Query:    1 ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            +RFQKHAERFDTEIVFD IHT  L Q+P+ L GD+ TYTCDALIIATGASARYLG+ SE KFMG+GVSACATCDGFFYKNQ VAV+GGGNTAVEEALYL+NIA+HVTVVHRRDK RAEKIMIDKL+ KA GGNV+I W   LDEVLGD +GVT +RIKNV SGA  ++ + GLF+AIGH+PNT IF+GQ+ MKGGYI+T+GG EGNATATSVPGVFAAGDVQDHVYRQAVTSA +GCMAALDAE+YLD
Sbjct:   65 QRFQKHAERFDTEIVFDQIHTADLRQKPIALSGDNATYTCDALIIATGASARYLGMESEAKFMGKGVSACATCDGFFYKNQDVAVIGGGNTAVEEALYLANIARHVTVVHRRDKLRAEKIMIDKLLAKARGGNVSIKWSSVLDEVLGDQTGVTGIRIKNVASGALEDIKLHGLFIAIGHSPNTQIFDGQLEMKGGYILTRGGNEGNATATSVPGVFAAGDVQDHVYRQAVTSAGSGCMAALDAEKYLD 312          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A521XT79_9PROT (Thioredoxin reductase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521XT79_9PROT)

HSP 1 Score: 394 bits (1013), Expect = 4.110e-136
Identity = 194/247 (78.54%), Postives = 218/247 (88.26%), Query Frame = 1
Query:    4 RFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            RFQKHAERF+TEIVFD IHT  L Q+P+ L GD+G+YTCDALIIATGASARYLG+ SE +FMG+GVSACATCDGFFYK Q VAVVGGGNTAVEEALYL+NIA+HVT++HRRDKFRAEKIMIDKLM K  GGNV+I W+  LD+VLGD +GVT +RIK+VKSG   EL V GLF+AIGHTPNT IFEGQ+ MK GYI+T GG EGNATATSVPGVFA+GDVQDHVYRQAVTSA +GCMAALDAE+YLD
Sbjct:   66 RFQKHAERFETEIVFDQIHTAMLRQKPITLLGDNGSYTCDALIIATGASARYLGMESETRFMGKGVSACATCDGFFYKGQDVAVVGGGNTAVEEALYLANIARHVTLIHRRDKFRAEKIMIDKLMAKTRGGNVSIKWNSVLDQVLGDKTGVTGIRIKDVKSGGDEELQVHGLFIAIGHTPNTQIFEGQLEMKNGYILTHGGQEGNATATSVPGVFASGDVQDHVYRQAVTSAGSGCMAALDAEKYLD 312          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A838JLJ4_9BURK (FAD-dependent oxidoreductase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A838JLJ4_9BURK)

HSP 1 Score: 392 bits (1007), Expect = 7.960e-136
Identity = 190/249 (76.31%), Postives = 218/249 (87.55%), Query Frame = 1
Query:    1 ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKA-DGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            ERF KHAERF+TEI+FD IHT KL ++P  L GD+G YTCD LIIATGASA+YLGLPSE+ FMG+GVS CATCDGFFYK Q V VVGGGNTAVEEALYLSNIAKHVTV+HRRDKFRAE I+ID+LM K  DGGN+++AW++ LDEVLGD +GVT +R+KN   G   E+ V+G+F+AIGHTPNTGIFEGQ+ M+GGYI+TQGG EGNATATS+PGVFAAGDVQDHVYRQAVTSAATGCMAALDAE YL+
Sbjct:   17 ERFLKHAERFETEIIFDHIHTAKLTEKPFTLIGDNGAYTCDTLIIATGASAKYLGLPSEQAFMGKGVSGCATCDGFFYKGQDVVVVGGGNTAVEEALYLSNIAKHVTVIHRRDKFRAEAILIDRLMAKTGDGGNLSVAWNNTLDEVLGDKTGVTGVRVKNTADGTAREMKVQGVFIAIGHTPNTGIFEGQLKMEGGYIITQGGHEGNATATSIPGVFAAGDVQDHVYRQAVTSAATGCMAALDAEAYLE 265          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A1I4PHR3_9PROT (Thioredoxin reductase n=9 Tax=Nitrosomonas TaxID=914 RepID=A0A1I4PHR3_9PROT)

HSP 1 Score: 389 bits (1000), Expect = 4.040e-134
Identity = 188/248 (75.81%), Postives = 218/248 (87.90%), Query Frame = 1
Query:    1 ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            +RFQKHAERF TEI+FD IHT KL ++P VL GD GTYTCDALIIATGASA+YLGLPSEE +MG+GVSACATCDGFFYK Q VAV+GGGNTAVEEALYLSNIA+ VTVVHRRDKFR+EKI+IDKLM + + GNVT+A +H LDEVLG+ SGVT +RIK V  GA   LD++G+F+AIGH PNT +F+GQ+ M+ GYIVTQGG EGNATATS+PGVFAAGDVQDH+YRQAVTSA +GCMAALDAE+YL+
Sbjct:   66 DRFQKHAERFQTEIIFDHIHTAKLTEKPFVLIGDQGTYTCDALIIATGASAKYLGLPSEEAYMGKGVSACATCDGFFYKGQDVAVIGGGNTAVEEALYLSNIARRVTVVHRRDKFRSEKILIDKLMHRVENGNVTLALNHVLDEVLGNESGVTSIRIKQVPDGATQTLDLQGVFIAIGHQPNTDLFQGQIEMRNGYIVTQGGNEGNATATSLPGVFAAGDVQDHIYRQAVTSAGSGCMAALDAEKYLE 313          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A4R3YCD4_9PROT (Thioredoxin reductase n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3YCD4_9PROT)

HSP 1 Score: 388 bits (997), Expect = 1.240e-133
Identity = 184/248 (74.19%), Postives = 219/248 (88.31%), Query Frame = 1
Query:    1 ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            ERFQKHAERF+TEI+FD IHT KL ++P  L GD+GTYTCDALIIATGASA+YLGLPSE+ FMGRGVS CATCDGFFYKNQ VAV+GGGN+A+EEALYLSNIAKHVT+VHRRD F+AEKIM+DKL++K+  GN+T+ + + LDEVLGD +GVT +RIKN K G+  ++ ++G+F+AIGH+PNTGIFEGQ+ MK GY+ TQGG  GNAT TS+PG+FAAGDVQDH+YRQAVTSA TGCMAALDAERYLD
Sbjct:   66 ERFQKHAERFNTEIIFDQIHTAKLTEKPYTLIGDAGTYTCDALIIATGASAKYLGLPSEQAFMGRGVSGCATCDGFFYKNQDVAVIGGGNSAIEEALYLSNIAKHVTLVHRRDTFKAEKIMVDKLVEKSKTGNITLEYFNELDEVLGDKTGVTGIRIKNTKDGSTKDIALQGVFIAIGHSPNTGIFEGQLEMKNGYLTTQGGSAGNATLTSIPGIFAAGDVQDHIYRQAVTSAGTGCMAALDAERYLD 313          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A3N5WDF0_9PROT (Thioredoxin reductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WDF0_9PROT)

HSP 1 Score: 388 bits (996), Expect = 1.880e-133
Identity = 186/247 (75.30%), Postives = 215/247 (87.04%), Query Frame = 1
Query:    4 RFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            RFQKHAERF+TEI+FD IHTVKL   P++L GD G YTCDAL+IATGASA YLGLPSEEKFMG+GVS CATCDGFFYKNQ V+V+GGGNTAVEEALYL+NIA HVT+VHRRDKFRAE I++DKL ++   G  TI WDH LDEVLGDN+GVT +R+K+VK+GA T+  ++G+F+AIGH PNT IF GQ+ MK GYI+T+GG  GNATATSVPGVFAAGDVQDHVYRQAVTSA TGCMAALDA+RYL+
Sbjct:   69 RFQKHAERFNTEIIFDHIHTVKLNDTPVMLIGDQGAYTCDALVIATGASAMYLGLPSEEKFMGKGVSGCATCDGFFYKNQDVSVIGGGNTAVEEALYLTNIAHHVTIVHRRDKFRAEAILVDKLNERVAAGKATILWDHVLDEVLGDNTGVTGMRVKHVKTGATTDKQLQGVFIAIGHKPNTDIFAGQLEMKNGYIITKGGLNGNATATSVPGVFAAGDVQDHVYRQAVTSAGTGCMAALDAQRYLE 315          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A7C5CL96_9GAMM (Thioredoxin reductase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C5CL96_9GAMM)

HSP 1 Score: 387 bits (994), Expect = 4.210e-133
Identity = 189/248 (76.21%), Postives = 217/248 (87.50%), Query Frame = 1
Query:    1 ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            ER +KHAERF+TEIVFD IHTV LGQRP  LEGDSG YTCDALIIATGASARYLGLPSEE F GRGVSACATCDGFFY+ Q VAV+GGGNTAVEEALYLSNIA+HVTVVHRRD+FR+EKI+ ++L++K+  GNVTI WDH L+EVLGD+SGVT +RI+NVKSG   E+ + G+F+AIGH PNTGIF+GQ+ M+ GYI  + G +GNATATSV GVFAAGDV DHVYRQA+TSA TGCMAALDAE+YLD
Sbjct:   67 ERMRKHAERFETEIVFDHIHTVDLGQRPFRLEGDSGIYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRGQDVAVIGGGNTAVEEALYLSNIARHVTVVHRRDQFRSEKILANQLIEKSKSGNVTIEWDHVLEEVLGDDSGVTGIRIRNVKSGETKEIPLMGVFIAIGHAPNTGIFDGQLEMENGYIKVKSGTDGNATATSVEGVFAAGDVMDHVYRQAITSAGTGCMAALDAEKYLD 314          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A4Y1YIB5_9PROT (Thioredoxin reductase n=1 Tax=Nitrosomonas stercoris TaxID=1444684 RepID=A0A4Y1YIB5_9PROT)

HSP 1 Score: 387 bits (993), Expect = 4.850e-133
Identity = 188/249 (75.50%), Postives = 215/249 (86.35%), Query Frame = 1
Query:    1 ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLDQ 747
            ERFQKHAERF TEI+FD IHT KL  +P  L GD  TYTCDALIIATGASA+YLGLPSEE FMG+GVSACATCDGFFYKNQ VAV+GGGNTAVEEALYL+NIA+ VT+VHRRD+FR+EKIMIDKLM+K   G + +A DH L+EVLGD+SGVT +RI++ K G   +LD++G+F+AIGH PNT +F+GQ+ MK GYI T GG EGNATATS+PGVFAAGDVQDHVYRQAVTSA TGCMAALDAERYLDQ
Sbjct:   67 ERFQKHAERFQTEIIFDHIHTAKLSAQPFELIGDQATYTCDALIIATGASAKYLGLPSEEAFMGKGVSACATCDGFFYKNQEVAVIGGGNTAVEEALYLANIARKVTLVHRRDQFRSEKIMIDKLMEKVGSGQIELALDHVLEEVLGDDSGVTGMRIRHTKDGTTQDLDLQGVFIAIGHHPNTDLFQGQLDMKNGYITTYGGSEGNATATSIPGVFAAGDVQDHVYRQAVTSAGTGCMAALDAERYLDQ 315          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: UPI001C0E742C (thioredoxin-disulfide reductase n=1 Tax=Azospira inquinata TaxID=2785627 RepID=UPI001C0E742C)

HSP 1 Score: 387 bits (993), Expect = 5.390e-133
Identity = 189/247 (76.52%), Postives = 216/247 (87.45%), Query Frame = 1
Query:    4 RFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            RFQKHAERF+TEI+FD IHT KL ++PL L GD+G YTCDALIIATGASA+YLGLPSEEKF G+GVSACATCDGFFY+NQAVAVVGGGNTAVEEALYL+NIA HVTV+HRR+KF+AEKIM DKL KKA+ G VT+ W+  LDEVLGD+SGVT LR+KNV  G+  ++ V G+F+AIGH PNT IFEGQ+ M+GGYI T+ G  GNATATS+PGVFAAGDVQDH+YRQA TSA TGCMAALDAERYLD
Sbjct:   69 RFQKHAERFETEILFDHIHTAKLQEKPLRLIGDAGEYTCDALIIATGASAQYLGLPSEEKFQGKGVSACATCDGFFYRNQAVAVVGGGNTAVEEALYLANIASHVTVIHRREKFKAEKIMQDKLFKKAEEGKVTVLWNSTLDEVLGDDSGVTGLRVKNVADGSTQDVPVMGVFIAIGHKPNTDIFEGQLEMEGGYIATRMGRNGNATATSIPGVFAAGDVQDHIYRQACTSAGTGCMAALDAERYLD 315          
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Match: A0A497XLY4_9PROT (Thioredoxin reductase n=1 Tax=Sulfurisoma sediminicola TaxID=1381557 RepID=A0A497XLY4_9PROT)

HSP 1 Score: 385 bits (990), Expect = 1.540e-132
Identity = 189/247 (76.52%), Postives = 213/247 (86.23%), Query Frame = 1
Query:    4 RFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGASARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLSNIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNSGVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQGGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLD 744
            RF+KHA RF+TEI+FD IHT KL ++P+ L GDSG YTCDALIIATGASA+YLGL SE+ F GRGVSACATCDGFFYKNQ VAV+GGGNTAVEEALYL+NIA HVTVVHRRDKFRAEKIM DKL +K   G VTI WD  LDEVLGD SGVT +RIKNVKSGA  ++D+ G+F+AIGH PNT +F GQ+ M+ GYIVTQGG EGNAT TS+PGVFAAGDVQDHVY+QA+TSAATGC AALDAE+YLD
Sbjct:   71 RFEKHATRFNTEIIFDHIHTAKLTEKPMKLIGDSGEYTCDALIIATGASAQYLGLASEQAFSGRGVSACATCDGFFYKNQKVAVIGGGNTAVEEALYLANIASHVTVVHRRDKFRAEKIMQDKLFEKERAGKVTIKWDSVLDEVLGDKSGVTGMRIKNVKSGATEDIDLMGVFIAIGHKPNTDLFAGQLEMENGYIVTQGGREGNATGTSIPGVFAAGDVQDHVYKQAITSAATGCQAALDAEKYLD 317          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21410.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4CJ76_9PROT6.140e-13879.03Thioredoxin reductase n=1 Tax=Betaproteobacteria b... [more]
A0A521XT79_9PROT4.110e-13678.54Thioredoxin reductase n=2 Tax=unclassified Betapro... [more]
A0A838JLJ4_9BURK7.960e-13676.31FAD-dependent oxidoreductase n=1 Tax=Burkholderial... [more]
A0A1I4PHR3_9PROT4.040e-13475.81Thioredoxin reductase n=9 Tax=Nitrosomonas TaxID=9... [more]
A0A4R3YCD4_9PROT1.240e-13374.19Thioredoxin reductase n=1 Tax=Sulfurirhabdus autot... [more]
A0A3N5WDF0_9PROT1.880e-13375.30Thioredoxin reductase n=1 Tax=Betaproteobacteria b... [more]
A0A7C5CL96_9GAMM4.210e-13376.21Thioredoxin reductase n=1 Tax=Thiotrichales bacter... [more]
A0A4Y1YIB5_9PROT4.850e-13375.50Thioredoxin reductase n=1 Tax=Nitrosomonas stercor... [more]
UPI001C0E742C5.390e-13376.52thioredoxin-disulfide reductase n=1 Tax=Azospira i... [more]
A0A497XLY4_9PROT1.540e-13276.52Thioredoxin reductase n=1 Tax=Sulfurisoma sedimini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21410contigP-wetherbeei_contig21410:1..759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1266925.JHVX01000008_gene346
Preferred nametrxB
PFAMsPyr_redox_2
Model size759
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00384
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.12e-133
EggNOG OGsCOG0492@1|root,COG0492@2|Bacteria,1MV15@1224|Proteobacteria,2VIVV@28216|Betaproteobacteria,372UH@32003|Nitrosomonadales
EC1.8.1.9
DescriptionBelongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
Cds size759
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186224.7494419-CDS-P-wetherbeei_contig21410:0..7591683186224.7494419-CDS-P-wetherbeei_contig21410:0..759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21410 1..759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21410.1.1prot_P-wetherbeei_contig21410.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21410 1..759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21410.1.1

>prot_P-wetherbeei_contig21410.1.1 ID=prot_P-wetherbeei_contig21410.1.1|Name=mRNA_P-wetherbeei_contig21410.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
ERFQKHAERFDTEIVFDTIHTVKLGQRPLVLEGDSGTYTCDALIIATGAS
ARYLGLPSEEKFMGRGVSACATCDGFFYKNQAVAVVGGGNTAVEEALYLS
NIAKHVTVVHRRDKFRAEKIMIDKLMKKADGGNVTIAWDHALDEVLGDNS
GVTRLRIKNVKSGAPTELDVKGLFVAIGHTPNTGIFEGQVAMKGGYIVTQ
GGGEGNATATSVPGVFAAGDVQDHVYRQAVTSAATGCMAALDAERYLDQP
AP*
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mRNA from alignment at P-wetherbeei_contig21410:1..759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21410.1.1 ID=mRNA_P-wetherbeei_contig21410.1.1|Name=mRNA_P-wetherbeei_contig21410.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig21410:1..759+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCTTCCAGAAGCACGCCGAGCGCTTCGACACCGAGATCGTCTTCGA CACGATCCACACCGTGAAACTGGGGCAGCGCCCGCTCGTGCTCGAGGGCG ACTCGGGCACCTACACGTGCGACGCGCTGATCATCGCCACCGGCGCCTCG GCCCGGTACCTCGGCCTGCCCTCGGAGGAGAAGTTCATGGGCCGCGGCGT GTCTGCCTGCGCGACCTGCGACGGCTTCTTCTACAAGAACCAGGCCGTAG CGGTGGTCGGCGGCGGCAACACCGCCGTGGAGGAGGCGCTGTACCTCTCC AACATCGCGAAGCACGTCACGGTGGTGCACCGGCGCGACAAGTTCCGCGC CGAGAAGATCATGATCGACAAGCTCATGAAGAAGGCCGACGGCGGCAACG TGACCATCGCCTGGGACCATGCGCTCGACGAAGTGCTCGGCGACAACTCC GGCGTCACGCGGCTGCGAATCAAGAACGTGAAGTCGGGCGCGCCGACGGA ACTCGACGTGAAGGGCTTGTTCGTCGCGATCGGGCACACGCCCAACACCG GGATCTTCGAGGGCCAGGTCGCGATGAAGGGCGGCTACATCGTCACGCAG GGCGGCGGCGAAGGCAACGCCACCGCGACGAGCGTGCCCGGCGTGTTCGC CGCGGGCGACGTGCAGGACCACGTCTACCGGCAGGCGGTGACGAGCGCGG CCACGGGCTGCATGGCGGCGCTGGACGCCGAGCGCTACCTGGACCAGCCG GCCCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21410:1..759+

>mRNA_P-wetherbeei_contig21410.1.1 ID=mRNA_P-wetherbeei_contig21410.1.1|Name=mRNA_P-wetherbeei_contig21410.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig21410:1..759+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGCTTCCAGAAGCACGCCGAGCGCTTCGACACCGAGATCGTCTTCGA
CACGATCCACACCGTGAAACTGGGGCAGCGCCCGCTCGTGCTCGAGGGCG
ACTCGGGCACCTACACGTGCGACGCGCTGATCATCGCCACCGGCGCCTCG
GCCCGGTACCTCGGCCTGCCCTCGGAGGAGAAGTTCATGGGCCGCGGCGT
GTCTGCCTGCGCGACCTGCGACGGCTTCTTCTACAAGAACCAGGCCGTAG
CGGTGGTCGGCGGCGGCAACACCGCCGTGGAGGAGGCGCTGTACCTCTCC
AACATCGCGAAGCACGTCACGGTGGTGCACCGGCGCGACAAGTTCCGCGC
CGAGAAGATCATGATCGACAAGCTCATGAAGAAGGCCGACGGCGGCAACG
TGACCATCGCCTGGGACCATGCGCTCGACGAAGTGCTCGGCGACAACTCC
GGCGTCACGCGGCTGCGAATCAAGAACGTGAAGTCGGGCGCGCCGACGGA
ACTCGACGTGAAGGGCTTGTTCGTCGCGATCGGGCACACGCCCAACACCG
GGATCTTCGAGGGCCAGGTCGCGATGAAGGGCGGCTACATCGTCACGCAG
GGCGGCGGCGAAGGCAACGCCACCGCGACGAGCGTGCCCGGCGTGTTCGC
CGCGGGCGACGTGCAGGACCACGTCTACCGGCAGGCGGTGACGAGCGCGG
CCACGGGCTGCATGGCGGCGCTGGACGCCGAGCGCTACCTGGACCAGCCG
GCCCCGTGA
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