mRNA_P-wetherbeei_contig21334.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21334.1.1
Unique NamemRNA_P-wetherbeei_contig21334.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Match: V5SEJ6_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SEJ6_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 4.870e-11
Identity = 24/43 (55.81%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 MSDPKNLIIILLLVGIGVLGYLYYDSQQTQVRIDVPGFKLEAK 129
            M++ KN++I++L+  + +LGYLYY+SQQ+ V ID PGFKLEA+
Sbjct:    1 MNNSKNVLILVLVAAVAILGYLYYESQQSAVVIDAPGFKLEAR 43
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BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Match: D8JRA2_HYPDA (Uncharacterized protein n=3 Tax=Hyphomicrobium TaxID=81 RepID=D8JRA2_HYPDA)

HSP 1 Score: 54.7 bits (130), Expect = 4.610e-9
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 DPKNLIIILLLVGIGVLGYLYYDSQQTQVRIDVPGFKLEAK 129
            D K+LII +LLV +GVL YL YD+ QT+V+ID+PG K+E +
Sbjct:    2 DTKSLIIGVLLVAVGVLSYLLYDANQTKVKIDLPGVKIEGR 42
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BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Match: F8JBC4_HYPSM (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) TaxID=717785 RepID=F8JBC4_HYPSM)

HSP 1 Score: 47.8 bits (112), Expect = 2.580e-6
Identity = 19/41 (46.34%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 DPKNLIIILLLVGIGVLGYLYYDSQQTQVRIDVPGFKLEAK 129
            D K+++I +L V + VLGYL +D+ QT+V++D+PG K+E +
Sbjct:    2 DTKSVMIGILAVAVVVLGYLLWDANQTKVKVDLPGIKIEGR 42
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BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Match: A0A1E3WB34_9HYPH (Uncharacterized protein n=1 Tax=Methyloceanibacter marginalis TaxID=1774971 RepID=A0A1E3WB34_9HYPH)

HSP 1 Score: 47.8 bits (112), Expect = 4.240e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 SDPKNLIIILL---LVGIGVLGYLYYDSQQTQVRIDVPGFK 117
            S    ++++LL   L+G+GVLGYLYY  QQ  V+IDVPGF+
Sbjct:    8 SGTNPILVVLLVAALIGVGVLGYLYYRQQQEVVKIDVPGFE 48
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BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Match: A0A6N0E763_9HYPH (Uncharacterized protein n=2 Tax=Methyloligella sp. GL2 TaxID=2742204 RepID=A0A6N0E763_9HYPH)

HSP 1 Score: 45.8 bits (107), Expect = 1.920e-5
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   37 LVGIGVLGYLYYDSQQTQV-RIDVPGFKLEAK 129
            LVG+ VLGYLYYD+ Q  V +IDVPGFK E K
Sbjct:   20 LVGLAVLGYLYYDATQRDVVKIDVPGFKGELK 51
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BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Match: A0A679JZI8_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobium TaxID=81 RepID=A0A679JZI8_9HYPH)

HSP 1 Score: 45.4 bits (106), Expect = 2.130e-5
Identity = 19/41 (46.34%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 DPKNLIIILLLVGIGVLGYLYYDSQQTQVRIDVPGFKLEAK 129
            D ++++I +L   + VLGYL +DSQQT+V++D+PG K+E +
Sbjct:    2 DIRSVVIGVLAGTVIVLGYLLWDSQQTKVKVDLPGIKIEGR 42
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21334.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
V5SEJ6_9HYPH4.870e-1155.81Uncharacterized protein n=1 Tax=Hyphomicrobium nit... [more]
D8JRA2_HYPDA4.610e-958.54Uncharacterized protein n=3 Tax=Hyphomicrobium Tax... [more]
F8JBC4_HYPSM2.580e-646.34Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
A0A1E3WB34_9HYPH4.240e-653.66Uncharacterized protein n=1 Tax=Methyloceanibacter... [more]
A0A6N0E763_9HYPH1.920e-568.75Uncharacterized protein n=2 Tax=Methyloligella sp.... [more]
A0A679JZI8_9HYPH2.130e-546.34Uncharacterized protein n=2 Tax=Hyphomicrobium Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21334contigP-wetherbeei_contig21334:323..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size132
Hectar predicted targeting categorysignal anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.434595-CDS-P-wetherbeei_contig21334:322..4541683186222.434595-CDS-P-wetherbeei_contig21334:322..454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21334 323..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21334.1.1prot_P-wetherbeei_contig21334.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21334 323..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21334.1.1

>prot_P-wetherbeei_contig21334.1.1 ID=prot_P-wetherbeei_contig21334.1.1|Name=mRNA_P-wetherbeei_contig21334.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
MSDPKNLIIILLLVGIGVLGYLYYDSQQTQVRIDVPGFKLEAK*
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mRNA from alignment at P-wetherbeei_contig21334:323..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21334.1.1 ID=mRNA_P-wetherbeei_contig21334.1.1|Name=mRNA_P-wetherbeei_contig21334.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig21334:323..454- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACCCCAAGAACTTGATCATCATCCTGCTGCTGGTCGGCATCGG
CGTGCTCGGCTACCTCTACTACGACAGCCAGCAGACGCAGGTGCGCATCG
ACGTGCCGGGCTTCAAGCTCGAAGCGAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21334:323..454-

>mRNA_P-wetherbeei_contig21334.1.1 ID=mRNA_P-wetherbeei_contig21334.1.1|Name=mRNA_P-wetherbeei_contig21334.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig21334:323..454- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACCCCAAGAACTTGATCATCATCCTGCTGCTGGTCGGCATCGG
CGTGCTCGGCTACCTCTACTACGACAGCCAGCAGACGCAGGTGCGCATCG
ACGTGCCGGGCTTCAAGCTCGAAGCGAAATAG
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