mRNA_P-wetherbeei_contig21323.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21323.1.1
Unique NamemRNA_P-wetherbeei_contig21323.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: S8CBZ7_9LAMI (PHD-type domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CBZ7_9LAMI)

HSP 1 Score: 76.3 bits (186), Expect = 1.920e-16
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   49 CEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICIAT 192
            C+ CG+D D D+VLLCD C  E+H +CL+PPL+ +P+G+W CP C+A+
Sbjct:   46 CKVCGMDKDDDNVLLCDKCDSEYHRYCLNPPLQKIPDGNWYCPSCVAS 93
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A2J7ZHW2_9CHLO (Lysine-specific demethylase lid (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZHW2_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 5.460e-16
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   49 CEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICIATARKKGAAAAAAGAK 234
            CE+C      D +LLCD C R FH++CLDPPL AVPEGDWLCP C A   ++G   A  GA+
Sbjct:  108 CERCAGGQQEDQILLCDRCDRGFHLFCLDPPLAAVPEGDWLCPPCRAEEEREGGGGAGRGAR 169
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A9TBW6_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TBW6_PHYPA)

HSP 1 Score: 79.3 bits (194), Expect = 1.660e-15
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICIA 189
            E+ T+C  CG+D D D +LLCD C  E+H++CL PPLE VP+G+W CP C+A
Sbjct: 1935 EDDTTCRVCGVDEDYDSILLCDGCDAEYHIYCLVPPLEKVPKGNWFCPSCVA 1986
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A7I4C0B1_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4C0B1_PHYPA)

HSP 1 Score: 79.3 bits (194), Expect = 1.660e-15
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICIA 189
            E+ T+C  CG+D D D +LLCD C  E+H++CL PPLE VP+G+W CP C+A
Sbjct: 1861 EDDTTCRVCGVDEDYDSILLCDGCDAEYHIYCLVPPLEKVPKGNWFCPSCVA 1912
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A2K1L4D6_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L4D6_PHYPA)

HSP 1 Score: 78.2 bits (191), Expect = 4.240e-15
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICIA 189
            E+ ++C  CG+D D D +LLCD C  E+H++CL PPLE VP+G+W CP C+A
Sbjct: 1865 EDDSTCRACGVDEDYDSILLCDGCDAEYHIYCLVPPLERVPKGNWFCPSCVA 1916
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A6J0P9G9_ELAGV (methyl-CpG-binding domain-containing protein 9 n=6 Tax=Arecaceae TaxID=4710 RepID=A0A6J0P9G9_ELAGV)

HSP 1 Score: 77.8 bits (190), Expect = 5.760e-15
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICI 186
            EEG  C+ CG+D D D VLLCD C  E+HM+CL+PPL  +PEG+W CP C+
Sbjct: 1291 EEGV-CKVCGIDKDDDSVLLCDKCDSEYHMYCLNPPLARIPEGNWYCPSCV 1340
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A199UZ30_ANACO (Methyl-CpG-binding domain-containing protein 9 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UZ30_ANACO)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-14
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICI 186
            +EG  C+ CG+D D D VLLCD C  E+HM+CL+PPL  +PEG+W CP CI
Sbjct:  219 DEGV-CKVCGIDKDDDSVLLCDTCDSEYHMYCLNPPLARIPEGNWYCPSCI 268
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BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A5N6LNH1_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LNH1_9ASTR)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICIAT 192
            E+G  C+ CG+D D D VLLCD C  E+HM+CLDPPL  +P+G+W CP C+++
Sbjct: 1150 EDGV-CKVCGMDKDDDSVLLCDKCDSEYHMYCLDPPLARIPDGNWYCPSCMSS 1201
[Close]
BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A6P5GVX0_ANACO (methyl-CpG-binding domain-containing protein 9 isoform X1 n=5 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GVX0_ANACO)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-14
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   34 EEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEAVPEGDWLCPICI 186
            +EG  C+ CG+D D D VLLCD C  E+HM+CL+PPL  +PEG+W CP CI
Sbjct: 1224 DEGV-CKVCGIDKDDDSVLLCDTCDSEYHMYCLNPPLARIPEGNWYCPSCI 1273
[Close]
BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Match: A0A6G0XK87_9STRA (PHD-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK87_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.920e-14
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   49 CEKCGLDNDADHVLLCDN-CPREFHMWCLDPPLEAVPEGDWLCPICI 186
            CEKC ++N+ D +LLCDN C RE+HM+CL PPLE VPE DW CP C+
Sbjct:  421 CEKCHMNNNHDKILLCDNNCGREYHMYCLKPPLEVVPEEDWFCPECV 467
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21323.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S8CBZ7_9LAMI1.920e-1654.17PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A2J7ZHW2_9CHLO5.460e-1654.84Lysine-specific demethylase lid (Fragment) n=1 Tax... [more]
A9TBW6_PHYPA1.660e-1555.77Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A7I4C0B1_PHYPA1.660e-1555.77Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
A0A2K1L4D6_PHYPA4.240e-1553.85Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A6J0P9G9_ELAGV5.760e-1558.82methyl-CpG-binding domain-containing protein 9 n=6... [more]
A0A199UZ30_ANACO1.060e-1458.82Methyl-CpG-binding domain-containing protein 9 n=1... [more]
A0A5N6LNH1_9ASTR1.070e-1454.72Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6P5GVX0_ANACO1.070e-1458.82methyl-CpG-binding domain-containing protein 9 iso... [more]
A0A6G0XK87_9STRA1.920e-1463.83PHD-type domain-containing protein n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21323contigP-wetherbeei_contig21323:927..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3218.PP1S200_118V6.1
PFAMsBromodomain,DDT,FYRC,FYRN,MBD,PHD,WHIM1,WSD
Model size234
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001763,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004402,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005911,GO:0006139,GO:0006259,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008080,GO:0008150,GO:0008152,GO:0008327,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009648,GO:0009653,GO:0009791,GO:0009889,GO:0009987,GO:0010016,GO:0010216,GO:0010223,GO:0010228,GO:0010346,GO:0010468,GO:0010556,GO:0016043,GO:0016407,GO:0016410,GO:0016567,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022414,GO:0030054,GO:0031323,GO:0031326,GO:0031935,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033043,GO:0033044,GO:0034212,GO:0034641,GO:0036094,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048367,GO:0048573,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051171,GO:0051252,GO:0051276,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0061630,GO:0061659,GO:0061733,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090308,GO:0097159,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902275,GO:1903506,GO:1905393,GO:2000112,GO:2001141
Exons1
Evalue2.71e-16
EggNOG OGs2CMNF@1|root,2QQZG@2759|Eukaryota,37REE@33090|Viridiplantae,3GDDM@35493|Streptophyta
Descriptionmethyl-CpG-binding domain-containing protein
Cds size234
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186222.1446154-CDS-P-wetherbeei_contig21323:926..11601683186222.1446154-CDS-P-wetherbeei_contig21323:926..1160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21323 927..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21323.1.1prot_P-wetherbeei_contig21323.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21323 927..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21323.1.1

>prot_P-wetherbeei_contig21323.1.1 ID=prot_P-wetherbeei_contig21323.1.1|Name=mRNA_P-wetherbeei_contig21323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
SDDDDSSSASEEEGTSCEKCGLDNDADHVLLCDNCPREFHMWCLDPPLEA
VPEGDWLCPICIATARKKGAAAAAAGAK
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mRNA from alignment at P-wetherbeei_contig21323:927..1160-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21323.1.1 ID=mRNA_P-wetherbeei_contig21323.1.1|Name=mRNA_P-wetherbeei_contig21323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig21323:927..1160- (Phaeothamnion wetherbeei SAG_119_79)
AGCGACGACGACGACAGTAGCAGCGCCAGCGAGGAGGAGGGCACGAGCTG
CGAGAAGTGCGGACTGGACAATGACGCCGACCACGTGCTCCTCTGCGACA
ACTGTCCCCGGGAATTCCATATGTGGTGCCTCGACCCGCCGCTGGAGGCG
GTGCCCGAGGGGGATTGGCTCTGCCCCATTTGCATCGCCACCGCCCGCAA
AAAAGGGGCGGCGGCTGCAGCGGCAGGCGCCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21323:927..1160-

>mRNA_P-wetherbeei_contig21323.1.1 ID=mRNA_P-wetherbeei_contig21323.1.1|Name=mRNA_P-wetherbeei_contig21323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig21323:927..1160- (Phaeothamnion wetherbeei SAG_119_79)
AGCGACGACGACGACAGTAGCAGCGCCAGCGAGGAGGAGGGCACGAGCTG
CGAGAAGTGCGGACTGGACAATGACGCCGACCACGTGCTCCTCTGCGACA
ACTGTCCCCGGGAATTCCATATGTGGTGCCTCGACCCGCCGCTGGAGGCG
GTGCCCGAGGGGGATTGGCTCTGCCCCATTTGCATCGCCACCGCCCGCAA
AAAAGGGGCGGCGGCTGCAGCGGCAGGCGCCAAG
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