mRNA_P-wetherbeei_contig2132.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2132.2.1
Unique NamemRNA_P-wetherbeei_contig2132.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2132.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2132contigP-wetherbeei_contig2132:331..1571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1242
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.887196-CDS-P-wetherbeei_contig2132:330..13591683186221.887196-CDS-P-wetherbeei_contig2132:330..1359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2132 331..1359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186221.8984606-UTR-P-wetherbeei_contig2132:1359..15711683186221.8984606-UTR-P-wetherbeei_contig2132:1359..1571Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2132 1360..1571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2132.2.1prot_P-wetherbeei_contig2132.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2132 331..1359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2132.2.1

>prot_P-wetherbeei_contig2132.2.1 ID=prot_P-wetherbeei_contig2132.2.1|Name=mRNA_P-wetherbeei_contig2132.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=343bp
MRAFRTATVLLGALLYAGSASGQTESPTPDSGPAPTPSPVIVPVPVTDPP
VVTPTPEPVTTPKPVAAPTLAPTPRPTVEPGTPTPAPTPAPPTPVTPQPT
VGVPTPAYNFEMTVKLAGAATPFRNEMRSMTGLSNVVRKWLHNDISQVDI
VSVDGESFKLTNTTRRNLADDENITTLATELVVGFKAITTVDAATLATAV
AKTEQVAALQKKLTAAVVQDLETATVSSITAAAIDEEDTGADDDSSADDD
GTGDGSGSGKKNKKTSSDGGSSASGIPATTWVYVAIGLGALLLMCVIGRC
FVARRRAKGGAVGGSTIMAGGLGAKKAMPVGSSSYHQQQVQQQ
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mRNA from alignment at P-wetherbeei_contig2132:331..1571-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2132.2.1 ID=mRNA_P-wetherbeei_contig2132.2.1|Name=mRNA_P-wetherbeei_contig2132.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1241bp|location=Sequence derived from alignment at P-wetherbeei_contig2132:331..1571- (Phaeothamnion wetherbeei SAG_119_79)
CGGTTCTGGACTACCCGGGCCTTCCGCGTCAGTCCTGCCGCAGCTTTCGA
GCGATGGGGTCCTTGCCGAGCGGTCTCTGGTAGGATTTCTCGTCCTCTAG
CTAGCAACGGGGCAGAAAGGGCTTCGCCGACCCGCGTCCCGACGGCCTGT
GCGCCGTCGACGGTGTCGAAAAAGGCCTTGAGCGATTACGAGAGAGAGGC
ACACACGGAAGGATGCGCGCTTTCAGGACTGCCACCGTGCTCTTGGGGGC
GCTGCTGTATGCCGGGTCCGCGTCAGGTCAGACGGAGAGTCCGACGCCGG
ATTCTGGCCCTGCGCCTACGCCATCGCCTGTGATTGTCCCCGTGCCGGTA
ACGGACCCGCCTGTGGTGACTCCGACGCCCGAACCTGTCACAACGCCCAA
ACCTGTCGCGGCGCCGACACTGGCACCAACTCCACGCCCCACGGTGGAGC
CAGGAACCCCGACGCCCGCTCCGACGCCGGCGCCGCCGACGCCCGTGACG
CCTCAGCCTACAGTGGGAGTGCCGACACCAGCCTACAACTTTGAGATGAC
TGTGAAGCTGGCTGGGGCTGCGACGCCATTCCGCAACGAAATGAGGTCCA
TGACGGGGCTCAGCAACGTGGTGCGGAAGTGGCTCCACAACGACATCTCG
CAGGTGGACATTGTGTCGGTCGACGGCGAGAGCTTCAAGCTGACCAATAC
CACCCGACGCAACCTGGCCGACGACGAAAATATTACAACGTTGGCCACCG
AACTCGTCGTGGGCTTCAAAGCCATCACGACCGTCGACGCCGCGACGCTC
GCCACGGCGGTCGCCAAGACCGAGCAGGTTGCCGCGCTGCAAAAAAAGCT
GACGGCCGCCGTTGTGCAGGACCTCGAAACGGCCACCGTCTCGTCGATCA
CAGCGGCCGCCATTGACGAAGAGGATACCGGCGCTGACGACGACAGCAGC
GCCGACGACGACGGCACCGGAGACGGGAGTGGGAGCGGCAAGAAGAACAA
GAAAACCAGCAGCGACGGCGGCAGCTCCGCCTCCGGCATCCCCGCGACGA
CGTGGGTGTATGTCGCGATTGGCCTCGGCGCCCTCTTGCTGATGTGCGTG
ATCGGTCGCTGCTTCGTCGCGCGGCGGCGCGCAAAAGGCGGCGCTGTCGG
CGGCAGCACGATTATGGCCGGCGGCCTTGGCGCGAAAAAGGCGATGCCGG
TCGGCTCGAGCAGCTACCACCAACAGCAGGTGCAGCAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2132:331..1571-

>mRNA_P-wetherbeei_contig2132.2.1 ID=mRNA_P-wetherbeei_contig2132.2.1|Name=mRNA_P-wetherbeei_contig2132.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1029bp|location=Sequence derived from alignment at P-wetherbeei_contig2132:331..1571- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCTTTCAGGACTGCCACCGTGCTCTTGGGGGCGCTGCTGTATGC
CGGGTCCGCGTCAGGTCAGACGGAGAGTCCGACGCCGGATTCTGGCCCTG
CGCCTACGCCATCGCCTGTGATTGTCCCCGTGCCGGTAACGGACCCGCCT
GTGGTGACTCCGACGCCCGAACCTGTCACAACGCCCAAACCTGTCGCGGC
GCCGACACTGGCACCAACTCCACGCCCCACGGTGGAGCCAGGAACCCCGA
CGCCCGCTCCGACGCCGGCGCCGCCGACGCCCGTGACGCCTCAGCCTACA
GTGGGAGTGCCGACACCAGCCTACAACTTTGAGATGACTGTGAAGCTGGC
TGGGGCTGCGACGCCATTCCGCAACGAAATGAGGTCCATGACGGGGCTCA
GCAACGTGGTGCGGAAGTGGCTCCACAACGACATCTCGCAGGTGGACATT
GTGTCGGTCGACGGCGAGAGCTTCAAGCTGACCAATACCACCCGACGCAA
CCTGGCCGACGACGAAAATATTACAACGTTGGCCACCGAACTCGTCGTGG
GCTTCAAAGCCATCACGACCGTCGACGCCGCGACGCTCGCCACGGCGGTC
GCCAAGACCGAGCAGGTTGCCGCGCTGCAAAAAAAGCTGACGGCCGCCGT
TGTGCAGGACCTCGAAACGGCCACCGTCTCGTCGATCACAGCGGCCGCCA
TTGACGAAGAGGATACCGGCGCTGACGACGACAGCAGCGCCGACGACGAC
GGCACCGGAGACGGGAGTGGGAGCGGCAAGAAGAACAAGAAAACCAGCAG
CGACGGCGGCAGCTCCGCCTCCGGCATCCCCGCGACGACGTGGGTGTATG
TCGCGATTGGCCTCGGCGCCCTCTTGCTGATGTGCGTGATCGGTCGCTGC
TTCGTCGCGCGGCGGCGCGCAAAAGGCGGCGCTGTCGGCGGCAGCACGAT
TATGGCCGGCGGCCTTGGCGCGAAAAAGGCGATGCCGGTCGGCTCGAGCA
GCTACCACCAACAGCAGGTGCAGCAGCAG
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